NO16G00590, NO16G00590 (gene) Nannochloropsis oceanica

Overview
NameNO16G00590
Unique NameNO16G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1644
Alignment locationchr16:205161..206804 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:205161..206804 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G00590 vs. NCBI_GenBank
Match: EWM24065.1 (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana])

HSP 1 Score: 293.5 bits (750), Expect = 6.500e-76
Identity = 145/239 (60.67%), Postives = 182/239 (76.15%), Query Frame = 0 
Query:   22 ASIFLTLLPTTASKDIEVGVEADDPIVAHKAGSGSKKSGLFERLSRVLDTGAAEDDDGVPFTDEQWHATKDLGEPVDPSLMTFKMPSEMVDAWDKDKGLRILQQTMDGDLTGPMRGLVADIKDLHEAWSKPHLFRALMSQIPLFHAIKPIQTIVMGKN-EEDYTAEDGMAAAGAFKGFMVRALDSMDVLRSPERLAEKMLTYASSKDKTLLDLFAKAARGEDENHREINNFFLKKELGD 260
            A+  L  +   ++KDIE+   A     A KAG G+KK+GLF+R+SR LDTG+A DDDG PFTDE W AT+D GEPVDP+LM FK P E  DAW  D GL++LQ +MDGDLT P+R LV   KDLH AW+ PH+FRAL++Q+PLF A KPIQ I+  K+ +EDY+ EDG+ AAG FK FM+R++D +D LR PE+ A K+  YA SKDKTLLDLFAKA+RGEDENH+EINNFF+++ELGD
Sbjct:   14 ATTLLLFITLASTKDIEID-NAGGGSTARKAG-GAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGD 250
The following BLAST results are available for this feature:
BLAST of NO16G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24065.16.500e-7660.67hypothetical protein Naga_100063g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003048NSK003048Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00590.2NO16G00590.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G00590.1NO16G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593197gene_5936Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100063g14gene6404Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00590.2NO16G00590.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G00590.1NO16G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00590 ID=NO16G00590|Name=NO16G00590|organism=Nannochloropsis oceanica|type=gene|length=1644bp
ACAGCTACGGTCGCGCTCTTGGATCATCCTACCATGGGTCTCCTCCGCTG
CAGCGTCGCCCCTTTGCCATTCCTCATCCTGGGCCTTGTCCTTTCCGCCT
CCATCTTCCTGACCCTCCTCCCAACCACGGCCTCCAAAGATATCGAAGTC
GGCGTCGAGGCCGACGATCCCATCGTGGCCCACAAGGCGGGAAGCGGCAG
CAAGAAATCGGGCTTGTTCGAGCGCTTGTCCCGGGTGCTCGATACCGGCG
CGGCCGAAGACGACGACGGCGTTCCCTTTACAGATGAGCAGTGGCATGCG
ACCAAGGATTTAGGCGAGCCTGTAGATCCGTCTTTGATGACATTCAAGAT
GCCCTCTGAGATGGTCGATGCATGGGACAAGGACAAGGGACTGAGAATAT
TGCAACAGACGATGGACGGTGATTTGACAGGGCCTATGCGGGGCCTGGTG
GCGGACATCAAAGACTTACATGAGGCCTGGTCCAAGCCACACCTGTTTCG
GGCACTTATGTCTCAAATTCCCCTGTTCCACGCAATCAAGCCAATTCAGA
CCATCGTAATGGGCAAGAATGAAGAGGATTACACGGCGGAAGATGGGATG
GCGGCCGCTGGGGCGTTCAAGGGATTTATGGTGAGGGCACTTGATTCCAT
GGACGTGCTGCGAAGTCCTGAGAGATTGGCGGAAAAAATGCTAACCTACG
CGAGTTCCAAGGACAAGACGTTGCTGGATTTGTTTGCCAAGGCAGCCCGG
GGGGAGGACGAGAACCACAGGGAGATAAACAACTTCTTTTTGAAGAAAGA
GTTGGGTGATTGTGAGTGATATTGAGCGGATTAGAGGAGTGAGCGGTTAA
AGGAAATGATAGAGGGAGAGGAGGAACGGAGACATATTTTCACAATTCTC
ATGTCATTAACGCCATGTACGCGACCGTCCGTGTAAGGCGCATTTCCTCC
CCCTTCTCTCACGCACCCACCGACCTCCCCCCTCGTTCATGCACCCCCGA
CACATGCTTGTACCCACATGCTTACCCACCCCTCAATGCTCGTCCTTTAA
TGCACCCTTTCATTCTGTTACACCCACAGTGATCGATCTGGACTTTTTAG
GGTTCAATGGCGTGGAGCCAAGCTTTCTTGGAGGCTTCCGTGACAAGgta
cagtacagccgtcgtcgaggcccttcctcctaccagcattccatctctcc
cttggctgctcccacccacacctccccccctccctctccctccccttttt
ccagGTCAAGGAGTTCTCTCCCATTATGTACGACTCGATTGTCACCGACC
CCAATATGAAGAAATACATCGAAAATCCCTTCCAGGCTTTGGAGGAAGCA
AAAGACATTCTGAGGACCTTCAAGGGACAATAGAAAAAAGAAGGAGGGAG
CAGGGAAGAGGAAGGGAGGGACAGAGGAGCTGGAGGTAAATTATTGTTTA
GAAGACTTGAAAATGATAGCAGGGAATAGTGGGGAAAATGACGGCATTAA
GGCGTGAAACGACTGCAAAGAAAGCAGAGAAAAAGTCTAGAGACGGAAGT
GAACACAAAGCACACAAAGAAGTGAATAGAGGTCAGACGGTGGCGGAGAA
GACATCAAGCACGCCCCCTCAAACACACACAAACGCACACTTAC
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protein sequence of NO16G00590.2

>NO16G00590.2-protein ID=NO16G00590.2-protein|Name=NO16G00590.2|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MGLLRCSVAPLPFLILGLVLSASIFLTLLPTTASKDIEVGVEADDPIVAH
KAGSGSKKSGLFERLSRVLDTGAAEDDDGVPFTDEQWHATKDLGEPVDPS
LMTFKMPSEMVDAWDKDKGLRILQQTMDGDLTGPMRGLVADIKDLHEAWS
KPHLFRALMSQIPLFHAIKPIQTIVMGKNEEDYTAEDGMAAAGAFKGFMV
RALDSMDVLRSPERLAEKMLTYASSKDKTLLDLFAKAARGEDENHREINN
FFLKKELGDCE*
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protein sequence of NO16G00590.1

>NO16G00590.1-protein ID=NO16G00590.1-protein|Name=NO16G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MGLLRCSVAPLPFLILGLVLSASIFLTLLPTTASKDIEVGVEADDPIVAH
KAGSGSKKSGLFERLSRVLDTGAAEDDDGVPFTDEQWHATKDLGEPVDPS
LMTFKMPSEMVDAWDKDKGLRILQQTMDGDLTGPMRGLVADIKDLHEAWS
KPHLFRALMSQIPLFHAIKPIQTIVMGKNEEDYTAEDGMAAAGAFKGFMV
RALDSMDVLRSPERLAEKMLTYASSKDKTLLDLFAKAARGEDENHREINN
FFLKKELGDLIDLDFLGFNGVEPSFLGGFRDKVKEFSPIMYDSIVTDPNM
KKYIENPFQALEEAKDILRTFKGQ*
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Synonyms
Publications