NO16G00590.2, NO16G00590.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00590.2
Unique NameNO16G00590.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1537
Alignment locationchr16:205161..206804 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:205161..206804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00590.2 vs.
Match: EWM24065.1 (hypothetical protein Naga_100063g14 [Nannochloropsis gaditana])

HSP 1 Score: 293.5 bits (750), Expect = 6.500e-76
Identity = 145/239 (60.67%), Postives = 182/239 (76.15%), Query Frame = 0 
Query:   22 ASIFLTLLPTTASKDIEVGVEADDPIVAHKAGSGSKKSGLFERLSRVLDTGAAEDDDGVPFTDEQWHATKDLGEPVDPSLMTFKMPSEMVDAWDKDKGLRILQQTMDGDLTGPMRGLVADIKDLHEAWSKPHLFRALMSQIPLFHAIKPIQTIVMGKN-EEDYTAEDGMAAAGAFKGFMVRALDSMDVLRSPERLAEKMLTYASSKDKTLLDLFAKAARGEDENHREINNFFLKKELGD 260
            A+  L  +   ++KDIE+   A     A KAG G+KK+GLF+R+SR LDTG+A DDDG PFTDE W AT+D GEPVDP+LM FK P E  DAW  D GL++LQ +MDGDLT P+R LV   KDLH AW+ PH+FRAL++Q+PLF A KPIQ I+  K+ +EDY+ EDG+ AAG FK FM+R++D +D LR PE+ A K+  YA SKDKTLLDLFAKA+RGEDENH+EINNFF+++ELGD
Sbjct:   14 ATTLLLFITLASTKDIEID-NAGGGSTARKAG-GAKKTGLFQRISRALDTGSAMDDDGTPFTDEMWEATRDEGEPVDPALMDFKNPVERTDAWKFDDGLKMLQTSMDGDLTNPVRDLVNGAKDLHAAWAVPHVFRALVTQVPLFQAFKPIQEIIKDKSRDEDYSPEDGVKAAGIFKSFMLRSMDVLDTLRDPEKFAAKLQGYAESKDKTLLDLFAKASRGEDENHKEINNFFMRQELGD 250
The following BLAST results are available for this feature:
BLAST of NO16G00590.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24065.16.500e-7660.67hypothetical protein Naga_100063g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00590NO16G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00590.2NO16G00590.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00590.2.cds1NO16G00590.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00590.2 ID=NO16G00590.2|Name=NO16G00590.2|organism=Nannochloropsis oceanica|type=mRNA|length=1537bp
ACAGCTACGGTCGCGCTCTTGGATCATCCTACCATGGGTCTCCTCCGCTG
CAGCGTCGCCCCTTTGCCATTCCTCATCCTGGGCCTTGTCCTTTCCGCCT
CCATCTTCCTGACCCTCCTCCCAACCACGGCCTCCAAAGATATCGAAGTC
GGCGTCGAGGCCGACGATCCCATCGTGGCCCACAAGGCGGGAAGCGGCAG
CAAGAAATCGGGCTTGTTCGAGCGCTTGTCCCGGGTGCTCGATACCGGCG
CGGCCGAAGACGACGACGGCGTTCCCTTTACAGATGAGCAGTGGCATGCG
ACCAAGGATTTAGGCGAGCCTGTAGATCCGTCTTTGATGACATTCAAGAT
GCCCTCTGAGATGGTCGATGCATGGGACAAGGACAAGGGACTGAGAATAT
TGCAACAGACGATGGACGGTGATTTGACAGGGCCTATGCGGGGCCTGGTG
GCGGACATCAAAGACTTACATGAGGCCTGGTCCAAGCCACACCTGTTTCG
GGCACTTATGTCTCAAATTCCCCTGTTCCACGCAATCAAGCCAATTCAGA
CCATCGTAATGGGCAAGAATGAAGAGGATTACACGGCGGAAGATGGGATG
GCGGCCGCTGGGGCGTTCAAGGGATTTATGGTGAGGGCACTTGATTCCAT
GGACGTGCTGCGAAGTCCTGAGAGATTGGCGGAAAAAATGCTAACCTACG
CGAGTTCCAAGGACAAGACGTTGCTGGATTTGTTTGCCAAGGCAGCCCGG
GGGGAGGACGAGAACCACAGGGAGATAAACAACTTCTTTTTGAAGAAAGA
GTTGGGTGATTGTGAGTGATATTGAGCGGATTAGAGGAGTGAGCGGTTAA
AGGAAATGATAGAGGGAGAGGAGGAACGGAGACATATTTTCACAATTCTC
ATGTCATTAACGCCATGTACGCGACCGTCCGTGTAAGGCGCATTTCCTCC
CCCTTCTCTCACGCACCCACCGACCTCCCCCCTCGTTCATGCACCCCCGA
CACATGCTTGTACCCACATGCTTACCCACCCCTCAATGCTCGTCCTTTAA
TGCACCCTTTCATTCTGTTACACCCACAGTGATCGATCTGGACTTTTTAG
GGTTCAATGGCGTGGAGCCAAGCTTTCTTGGAGGCTTCCGTGACAAGGTC
AAGGAGTTCTCTCCCATTATGTACGACTCGATTGTCACCGACCCCAATAT
GAAGAAATACATCGAAAATCCCTTCCAGGCTTTGGAGGAAGCAAAAGACA
TTCTGAGGACCTTCAAGGGACAATAGAAAAAAGAAGGAGGGAGCAGGGAA
GAGGAAGGGAGGGACAGAGGAGCTGGAGGTAAATTATTGTTTAGAAGACT
TGAAAATGATAGCAGGGAATAGTGGGGAAAATGACGGCATTAAGGCGTGA
AACGACTGCAAAGAAAGCAGAGAAAAAGTCTAGAGACGGAAGTGAACACA
AAGCACACAAAGAAGTGAATAGAGGTCAGACGGTGGCGGAGAAGACATCA
AGCACGCCCCCTCAAACACACACAAACGCACACTTAC
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protein sequence of NO16G00590.2

>NO16G00590.2-protein ID=NO16G00590.2-protein|Name=NO16G00590.2|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MGLLRCSVAPLPFLILGLVLSASIFLTLLPTTASKDIEVGVEADDPIVAH
KAGSGSKKSGLFERLSRVLDTGAAEDDDGVPFTDEQWHATKDLGEPVDPS
LMTFKMPSEMVDAWDKDKGLRILQQTMDGDLTGPMRGLVADIKDLHEAWS
KPHLFRALMSQIPLFHAIKPIQTIVMGKNEEDYTAEDGMAAAGAFKGFMV
RALDSMDVLRSPERLAEKMLTYASSKDKTLLDLFAKAARGEDENHREINN
FFLKKELGDCE*
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mRNA from alignment at chr16:205161..206804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00590.2 ID=NO16G00590.2|Name=NO16G00590.2|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at chr16:205161..206804- (Nannochloropsis oceanica)
ACAGCTACGGTCGCGCTCTTGGATCATCCTACCATGGGTCTCCTCCGCTG
CAGCGTCGCCCCTTTGCCATTCCTCATCCTGGGCCTTGTCCTTTCCGCCT
CCATCTTCCTGACCCTCCTCCCAACCACGGCCTCCAAAGATATCGAAGTC
GGCGTCGAGGCCGACGATCCCATCGTGGCCCACAAGGCGGGAAGCGGCAG
CAAGAAATCGGGCTTGTTCGAGCGCTTGTCCCGGGTGCTCGATACCGGCG
CGGCCGAAGACGACGACGGCGTTCCCTTTACAGATGAGCAGTGGCATGCG
ACCAAGGATTTAGGCGAGCCTGTAGATCCGTCTTTGATGACATTCAAGAT
GCCCTCTGAGATGGTCGATGCATGGGACAAGGACAAGGGACTGAGAATAT
TGCAACAGACGATGGACGGTGATTTGACAGGGCCTATGCGGGGCCTGGTG
GCGGACATCAAAGACTTACATGAGGCCTGGTCCAAGCCACACCTGTTTCG
GGCACTTATGTCTCAAATTCCCCTGTTCCACGCAATCAAGCCAATTCAGA
CCATCGTAATGGGCAAGAATGAAGAGGATTACACGGCGGAAGATGGGATG
GCGGCCGCTGGGGCGTTCAAGGGATTTATGGTGAGGGCACTTGATTCCAT
GGACGTGCTGCGAAGTCCTGAGAGATTGGCGGAAAAAATGCTAACCTACG
CGAGTTCCAAGGACAAGACGTTGCTGGATTTGTTTGCCAAGGCAGCCCGG
GGGGAGGACGAGAACCACAGGGAGATAAACAACTTCTTTTTGAAGAAAGA
GTTGGGTGATTGTGAGTGATATTGAGCGGATTAGAGGAGTGAGCGGTTAA
AGGAAATGATAGAGGGAGAGGAGGAACGGAGACATATTTTCACAATTCTC
ATGTCATTAACGCCATGTACGCGACCGTCCGTGTAAGGCGCATTTCCTCC
CCCTTCTCTCACGCACCCACCGACCTCCCCCCTCGTTCATGCACCCCCGA
CACATGCTTGTACCCACATGCTTACCCACCCCTCAATGCTCGTCCTTTAA
TGCACCCTTTCATTCTGTTACACCCACAGTGATCGATCTGGACTTTTTAG
GGTTCAATGGCGTGGAGCCAAGCTTTCTTGGAGGCTTCCGTGACAAGGTA
CAGTACAGCCGTCGTCGAGGCCCTTCCTCCTACCAGCATTCCATCTCTCC
CTTGGCTGCTCCCACCCACACCTCCCCCCCTCCCTCTCCCTCCCCTTTTT
CCAGGTCAAGGAGTTCTCTCCCATTATGTACGACTCGATTGTCACCGACC
CCAATATGAAGAAATACATCGAAAATCCCTTCCAGGCTTTGGAGGAAGCA
AAAGACATTCTGAGGACCTTCAAGGGACAATAGAAAAAAGAAGGAGGGAG
CAGGGAAGAGGAAGGGAGGGACAGAGGAGCTGGAGGTAAATTATTGTTTA
GAAGACTTGAAAATGATAGCAGGGAATAGTGGGGAAAATGACGGCATTAA
GGCGTGAAACGACTGCAAAGAAAGCAGAGAAAAAGTCTAGAGACGGAAGT
GAACACAAAGCACACAAAGAAGTGAATAGAGGTCAGACGGTGGCGGAGAA
GACATCAAGCACGCCCCCTCAAACACACACAAACGCACACTTAC
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Coding sequence (CDS) from alignment at chr16:205161..206804-

>NO16G00590.2 ID=NO16G00590.2|Name=NO16G00590.2|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr16:205161..206804- (Nannochloropsis oceanica)
ATGGGTCTCCTCCGCTGCAGCGTCGCCCCTTTGCCATTCCTCATCCTGGG
CCTTGTCCTTTCCGCCTCCATCTTCCTGACCCTCCTCCCAACCACGGCCT
CCAAAGATATCGAAGTCGGCGTCGAGGCCGACGATCCCATCGTGGCCCAC
AAGGCGGGAAGCGGCAGCAAGAAATCGGGCTTGTTCGAGCGCTTGTCCCG
GGTGCTCGATACCGGCGCGGCCGAAGACGACGACGGCGTTCCCTTTACAG
ATGAGCAGTGGCATGCGACCAAGGATTTAGGCGAGCCTGTAGATCCGTCT
TTGATGACATTCAAGATGCCCTCTGAGATGGTCGATGCATGGGACAAGGA
CAAGGGACTGAGAATATTGCAACAGACGATGGACGGTGATTTGACAGGGC
CTATGCGGGGCCTGGTGGCGGACATCAAAGACTTACATGAGGCCTGGTCC
AAGCCACACCTGTTTCGGGCACTTATGTCTCAAATTCCCCTGTTCCACGC
AATCAAGCCAATTCAGACCATCGTAATGGGCAAGAATGAAGAGGATTACA
CGGCGGAAGATGGGATGGCGGCCGCTGGGGCGTTCAAGGGATTTATGGTG
AGGGCACTTGATTCCATGGACGTGCTGCGAAGTCCTGAGAGATTGGCGGA
AAAAATGCTAACCTACGCGAGTTCCAAGGACAAGACGTTGCTGGATTTGT
TTGCCAAGGCAGCCCGGGGGGAGGACGAGAACCACAGGGAGATAAACAAC
TTCTTTTTGAAGAAAGAGTTGGGTGATTGTGAGTGA
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Synonyms
Publications