NO16G00520, NO16G00520 (gene) Nannochloropsis oceanica

Overview
NameNO16G00520
Unique NameNO16G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2056
Alignment locationchr16:181655..183710 -

Link to JBrowse

Properties
Property NameValue
DescriptionProteasome subunit beta type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:181655..183710 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0019538protein metabolic process
GO:0009987cellular process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR023333Proteasome_suB-type
IPR035216Proteasome_beta7
IPR001353Proteasome_sua/b
IPR000243Pept_T1A_subB
Homology
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: XP_005856053.1 (20S proteasome subunit beta 2 [Nannochloropsis gaditana CCMP526] >EKU20300.1 20S proteasome subunit beta 2 [Nannochloropsis gaditana CCMP526] >EWM24068.1 26s proteasome beta type 7 subunit [Nannochloropsis gaditana])

HSP 1 Score: 521.5 bits (1342), Expect = 1.600e-144
Identity = 258/290 (88.97%), Postives = 277/290 (95.52%), Query Frame = 0 
Query:    1 MRGGSATQSQRGALKEDAPGFNFDNYSRNASLPTEKTLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKSGEVSVLRGYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAMTF 291
            M G S  QS RGALKED PGFNFDNY+RNASLPTE T+HLPSAMKTGTTIAGV FKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTE+ISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDM+EAEA+ELVKEAILAGI+NDLGSGSNVDLTIIR++GEV+VLRGY++PND++PLRTSY RP+AL++PAGATAV ++H +PAR  LEGLVIEDATAMTF
Sbjct:    1 MHGESGKQSLRGALKEDVPGFNFDNYARNASLPTETTMHLPSAMKTGTTIAGVTFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMTEAEAIELVKEAILAGIYNDLGSGSNVDLTIIRRNGEVTVLRGYLTPNDVEPLRTSYKRPAALSVPAGATAVLSTHMDPARPGLEGLVIEDATAMTF 290
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: CBJ31081.1 (26S proteasome beta type 7 subunit [Ectocarpus siliculosus])

HSP 1 Score: 379.0 bits (972), Expect = 1.300e-101
Identity = 193/272 (70.96%), Postives = 222/272 (81.62%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTE-----KTLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKSGEVSVLRGYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLV-IEDA 286
            GF+F+N+ RNA +  E     K   LP A  TGTTI G ++K GVVLGADTRATGGTEV DKNCEKIHYLAPNIYCCGAGTAADTEKTTE+IS QLDLLRLSTG+ SRVVTACTMLKRMLFRYQG+VSAALVLGGVD +G HLY IYPHGS+DK PY+TMGSGSLAAMSVFETGFKEDM EAEA+ELVK+AI+AG+FNDLGSGSNVD+T+IR  GE ++ RG   PN++  LR +  RP+A+ +P GAT + AS F+P    L  LV +EDA
Sbjct:   34 GFDFENHHRNARIAAELAKSGKEGTLPRAKLTGTTICGCIYKGGVVLGADTRATGGTEVVDKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISGQLDLLRLSTGTQSRVVTACTMLKRMLFRYQGYVSAALVLGGVDVTGPHLYNIYPHGSSDKLPYLTMGSGSLAAMSVFETGFKEDMEEAEAVELVKQAIMAGVFNDLGSGSNVDVTVIRPGGETAIFRGLEKPNEVSELRKTVERPAAIKVPKGATEILASKFQP----LSSLVTVEDA 301
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: XP_009040179.1 (hypothetical protein AURANDRAFT_69937 [Aureococcus anophagefferens] >EGB05050.1 hypothetical protein AURANDRAFT_69937 [Aureococcus anophagefferens])

HSP 1 Score: 342.8 bits (878), Expect = 1.000e-90
Identity = 175/250 (70.00%), Postives = 200/250 (80.00%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTEK-TLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKSGEVSVLRGYVSPNDLDPLRTSYARPSALTIPAGATAVTAS 269
            GF+F   +RN  +        +P  M TGTTI G+V+  G+VLGADTRAT G+EVADKNCEKIHYLAPNIYCCGAGTAADTEKTTE+I+SQL+LLRLSTG+ SRVV A T+LKRMLF+YQGH+ AALVLGGVD +G  LYQIYPHGST K PYVTMGSGSLAAMSVFET +K+ M EA A+ LVK AI AGIFNDLGSGSNVD+TIIR  G   V+RGY +PND  PLR +YARP AL  PA ATAV ++
Sbjct:   18 GFDFGMTARNEQIAAAAGGRPMPQPMSTGTTICGMVYDGGIVLGADTRATAGSEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTELIASQLELLRLSTGTQSRVVAAVTLLKRMLFKYQGHIGAALVLGGVDCTGPGLYQIYPHGSTSKLPYVTMGSGSLAAMSVFETEYKDGMDEAGAVALVKNAIRAGIFNDLGSGSNVDVTIIRAGGASEVIRGYETPNDTAPLRAAYARPKALIPPAAATAVLST 267
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: CCA16536.1 (proteasome subunit beta type7 putative [Albugo laibachii Nc14])

HSP 1 Score: 339.3 bits (869), Expect = 1.100e-89
Identity = 179/272 (65.81%), Postives = 212/272 (77.94%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTEKTLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKS-GEVSVLR--GYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAM 289
            GF+F N  RN  L  +  L +  AMKTGTTI GVV+KDGVVLGADTR+TGGT V DKNCEKIHY+APNIYCCGAGTAADTE TT +ISSQL+L RL+T + SRVVTA T+LK+MLFRYQGH+SAALVLGGVD++G HLY +YPHGSTDK PYVTMGSGSLAAMS+FE G+K+DM+E EA +LV++AILAG+FNDLGSGSNVD+TII+K    V V++    + PN++  LR    R     IP GATAV  S FE  R     LV+E+AT M
Sbjct:   42 GFDFQNCERNKRLMQDGNLTI-KAMKTGTTICGVVYKDGVVLGADTRSTGGTIVMDKNCEKIHYIAPNIYCCGAGTAADTENTTALISSQLELHRLNTNTESRVVTAMTLLKQMLFRYQGHISAALVLGGVDATGPHLYTVYPHGSTDKLPYVTMGSGSLAAMSMFEQGYKDDMTEEEAKKLVQDAILAGVFNDLGSGSNVDITIIKKGPNGVEVVQDINSIKPNEVSQLRDQVKRNIVTDIPRGATAVLKSTFEKFRPE---LVVEEATPM 309
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: CCA16537.1 (proteasome subunit beta type7 putative [Albugo laibachii Nc14])

HSP 1 Score: 339.3 bits (869), Expect = 1.100e-89
Identity = 179/272 (65.81%), Postives = 212/272 (77.94%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTEKTLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKS-GEVSVLR--GYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAM 289
            GF+F N  RN  L  +  L +  AMKTGTTI GVV+KDGVVLGADTR+TGGT V DKNCEKIHY+APNIYCCGAGTAADTE TT +ISSQL+L RL+T + SRVVTA T+LK+MLFRYQGH+SAALVLGGVD++G HLY +YPHGSTDK PYVTMGSGSLAAMS+FE G+K+DM+E EA +LV++AILAG+FNDLGSGSNVD+TII+K    V V++    + PN++  LR    R     IP GATAV  S FE  R     LV+E+AT M
Sbjct:   51 GFDFQNCERNKRLMQDGNLTI-KAMKTGTTICGVVYKDGVVLGADTRSTGGTIVMDKNCEKIHYIAPNIYCCGAGTAADTENTTALISSQLELHRLNTNTESRVVTAMTLLKQMLFRYQGHISAALVLGGVDATGPHLYTVYPHGSTDKLPYVTMGSGSLAAMSMFEQGYKDDMTEEEAKKLVQDAILAGVFNDLGSGSNVDITIIKKGPNGVEVVQDINSIKPNEVSQLRDQVKRNIVTDIPRGATAVLKSTFEKFRPE---LVVEEATPM 318
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: CCA16538.1 (proteasome subunit beta type7 putative [Albugo laibachii Nc14])

HSP 1 Score: 339.3 bits (869), Expect = 1.100e-89
Identity = 179/272 (65.81%), Postives = 212/272 (77.94%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTEKTLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKS-GEVSVLR--GYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAM 289
            GF+F N  RN  L  +  L +  AMKTGTTI GVV+KDGVVLGADTR+TGGT V DKNCEKIHY+APNIYCCGAGTAADTE TT +ISSQL+L RL+T + SRVVTA T+LK+MLFRYQGH+SAALVLGGVD++G HLY +YPHGSTDK PYVTMGSGSLAAMS+FE G+K+DM+E EA +LV++AILAG+FNDLGSGSNVD+TII+K    V V++    + PN++  LR    R     IP GATAV  S FE  R     LV+E+AT M
Sbjct:   45 GFDFQNCERNKRLMQDGNLTI-KAMKTGTTICGVVYKDGVVLGADTRSTGGTIVMDKNCEKIHYIAPNIYCCGAGTAADTENTTALISSQLELHRLNTNTESRVVTAMTLLKQMLFRYQGHISAALVLGGVDATGPHLYTVYPHGSTDKLPYVTMGSGSLAAMSMFEQGYKDDMTEEEAKKLVQDAILAGVFNDLGSGSNVDITIIKKGPNGVEVVQDINSIKPNEVSQLRDQVKRNIVTDIPRGATAVLKSTFEKFRPE---LVVEEATPM 312
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: CCI41189.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 336.7 bits (862), Expect = 7.400e-89
Identity = 177/272 (65.07%), Postives = 208/272 (76.47%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTEKTLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKSG---EVSVLRGYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAM 289
            GF+F+N  RN  L     L +  AMKTGTTI G+V+KDGVVLGADTR+TGGT V DKNCEKIHY+APNIYCCGAGTAADTE TT +ISSQL+L RL+T + SRVVTA T+LK+MLFRYQGH+SAALVLGGVD++G HLY +YPHGSTDK PYVTMGSGSLAAM+ FE G+K+DM+E EA  LV++AILAG+FNDLGSGSNVD+TII+K     EV      + PN++  LR    R     IP GATAV  S FE  R     LV+E+AT M
Sbjct:   24 GFDFENCERNKRLLQNGNLTI-KAMKTGTTICGIVYKDGVVLGADTRSTGGTIVMDKNCEKIHYIAPNIYCCGAGTAADTENTTALISSQLELHRLNTNTESRVVTAMTLLKQMLFRYQGHISAALVLGGVDATGPHLYTVYPHGSTDKLPYVTMGSGSLAAMATFEQGYKDDMTEEEAKRLVQDAILAGVFNDLGSGSNVDITIIKKGPTGVEVVQDINSIKPNEVSQLRDQVKRNIVTDIPRGATAVLKSSFEKFRPE---LVVEEATPM 291
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: CCI41188.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 331.6 bits (849), Expect = 2.400e-87
Identity = 177/275 (64.36%), Postives = 208/275 (75.64%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTEKTLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVA---DKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKSG---EVSVLRGYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAM 289
            GF+F+N  RN  L     L +  AMKTGTTI G+V+KDGVVLGADTR+TGGT V    DKNCEKIHY+APNIYCCGAGTAADTE TT +ISSQL+L RL+T + SRVVTA T+LK+MLFRYQGH+SAALVLGGVD++G HLY +YPHGSTDK PYVTMGSGSLAAM+ FE G+K+DM+E EA  LV++AILAG+FNDLGSGSNVD+TII+K     EV      + PN++  LR    R     IP GATAV  S FE  R     LV+E+AT M
Sbjct:   24 GFDFENCERNKRLLQNGNLTI-KAMKTGTTICGIVYKDGVVLGADTRSTGGTIVCLVMDKNCEKIHYIAPNIYCCGAGTAADTENTTALISSQLELHRLNTNTESRVVTAMTLLKQMLFRYQGHISAALVLGGVDATGPHLYTVYPHGSTDKLPYVTMGSGSLAAMATFEQGYKDDMTEEEAKRLVQDAILAGVFNDLGSGSNVDITIIKKGPTGVEVVQDINSIKPNEVSQLRDQVKRNIVTDIPRGATAVLKSSFEKFRPE---LVVEEATPM 294
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: XP_024585811.1 (20s proteasome subunit beta 2 [Plasmopara halstedii] >CEG49442.1 20s proteasome subunit beta 2 [Plasmopara halstedii])

HSP 1 Score: 330.1 bits (845), Expect = 6.900e-87
Identity = 177/273 (64.84%), Postives = 211/273 (77.29%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTEK-TLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRK-SGEVSVLR--GYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAM 289
            GFNFDN  RN  L ++        A KTGTTI GVV+K+GVVLGADTR+TGG+ V DKNCEKIHY+APNIYCCGAGTAADTE TT +ISSQL+L RL+T + SRVVTA T+LK+MLF+YQGH+SAALVLGGVD +G HLY IYPHGSTDK P+VTMGSGSLAAMSVFE G+K+DM+E EA  LV+EAILAGIFNDLGSGSNVD+T I+K SG+V V++    + PN++  LR+   R     IP GAT V +S  EP       +V+E+AT M
Sbjct:   24 GFNFDNCRRNELLLSQSGGKQKLKATKTGTTIVGVVYKNGVVLGADTRSTGGSIVMDKNCEKIHYIAPNIYCCGAGTAADTENTTALISSQLELHRLNTDTQSRVVTAMTLLKKMLFQYQGHISAALVLGGVDVTGPHLYTIYPHGSTDKLPFVTMGSGSLAAMSVFEHGYKDDMTEDEAKSLVQEAILAGIFNDLGSGSNVDVTTIKKVSGKVEVVKEINCIKPNEVSELRSQINRDIVTHIPRGATLVLSSKTEPFP---ADIVVEEATPM 293
[Close]
BLAST of NO16G00520 vs. NCBI_GenBank
Match: XP_008911755.1 (hypothetical protein PPTG_16154 [Phytophthora parasitica INRA-310] >ETI37461.1 hypothetical protein F443_16551 [Phytophthora parasitica P1569] >ETK77684.1 hypothetical protein L915_16079 [Phytophthora parasitica] >ETL31130.1 hypothetical protein L916_15971 [Phytophthora parasitica] >ETL84383.1 hypothetical protein L917_15771 [Phytophthora parasitica] >ETM37553.1 hypothetical protein L914_15907 [Phytophthora parasitica] >ETN03211.1 hypothetical protein PPTG_16154 [Phytophthora parasitica INRA-310] >ETO66237.1 hypothetical protein F444_16526 [Phytophthora parasitica P1976] >ETP07322.1 hypothetical protein F441_16365 [Phytophthora parasitica CJ01A1] >ETP35395.1 hypothetical protein F442_16389 [Phytophthora parasitica P10297])

HSP 1 Score: 329.3 bits (843), Expect = 1.200e-86
Identity = 179/275 (65.09%), Postives = 214/275 (77.82%), Query Frame = 0 
Query:   20 GFNFDNYSRNASLPTEK-TLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRK-SGEVSVLRGY--VSPNDLDPLRTSYARPSALTIPAGATAVTASHFE--PARKALEGLVIEDATAM 289
            GFNFDN  RN  L ++        A KTGTTI GVV+KDGVVLGADTR+TGG+ V DKNCEKIHY+APNIYCCGAGTAADTE TT +ISSQL+L RL+T + SRVVTA T+LKRMLF+YQG+VSAALVLGGVD +G HLY IYPHGSTDK P+VTMGSGSLAAMSVFE G+K+DM+E EA +LV+EAILAGIFNDLGSGSNVD+T I+K +G+V V++ +  + PN++  LR+   R     IP GAT V +S  E  PA      +V+E+AT M
Sbjct:   24 GFNFDNCRRNELLLSQSGGKQKLKATKTGTTIVGVVYKDGVVLGADTRSTGGSIVMDKNCEKIHYIAPNIYCCGAGTAADTENTTALISSQLELHRLNTDTQSRVVTAMTLLKRMLFQYQGYVSAALVLGGVDVTGPHLYTIYPHGSTDKLPFVTMGSGSLAAMSVFEHGYKDDMTEDEAKKLVQEAILAGIFNDLGSGSNVDVTTIKKVNGKVEVVKEFNCIKPNEVSELRSQINRDIVTHIPRGATHVLSSKTELFPA-----NIVVEEATPM 293
The following BLAST results are available for this feature:
BLAST of NO16G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856053.11.600e-14488.9720S proteasome subunit beta 2 [Nannochloropsis gad... [more]
CBJ31081.11.300e-10170.9626S proteasome beta type 7 subunit [Ectocarpus sil... [more]
XP_009040179.11.000e-9070.00hypothetical protein AURANDRAFT_69937 [Aureococcus... [more]
CCA16536.11.100e-8965.81proteasome subunit beta type7 putative [Albugo lai... [more]
CCA16537.11.100e-8965.81proteasome subunit beta type7 putative [Albugo lai... [more]
CCA16538.11.100e-8965.81proteasome subunit beta type7 putative [Albugo lai... [more]
CCI41189.17.400e-8965.07unnamed protein product [Albugo candida][more]
CCI41188.12.400e-8764.36unnamed protein product [Albugo candida][more]
XP_024585811.16.900e-8764.8420s proteasome subunit beta 2 [Plasmopara halstedi... [more]
XP_008911755.11.200e-8665.09hypothetical protein PPTG_16154 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL150nonsL150Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003040NSK003040Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00520.1NO16G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593158gene_5926Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100063g4gene6395Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00520.1NO16G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00520 ID=NO16G00520|Name=NO16G00520|organism=Nannochloropsis oceanica|type=gene|length=2056bp
TGGAAGTCTTCTACGTTCTTGGATGGGGTATGCCTTTCCGAGACTAGAGC
TTGTGTTGAAGAGGAAAAGCAAGAAGATGAGGAAGGGGAGGAAGTGAGAG
TGAAGGAAGAGGAGATAGTGGTTGTGGACTTAGCGGTGGTAGCAGACCCA
GGCGGTGGCATTGTTTTCTTTGCCTGCCTCGTCGCTATCCCAGCTTCATT
ATGACGAAGGGGGCCAGGGAATGAAGGAATGTCTCTGACTTGCTGTCTGT
ACTACACGGCCCACTCACTTAATACGTGCATTTACAGGGTCTAGGCACCT
TTGATTCCGATGGCACTTTGCGTAGCACCCCCGCAAACCAATCCTTTACG
ATAGCGAGTAACCCACCATCACCTCCTTCCTTGCTTCCCCTACACAGACA
CTTCCACCCACCCACATCACGATGCGCGGCGGTTCAGCGACCCAATCCCA
ACGCGGGGCCTTGAAGGAGGATGCACCTGGCTTTAATTTTGACAATTATT
CCAGAAATGCCTCCTTGCCAACGGAGAAGACTCTGCACTTGCCCTCGgta
cgtggaaggaaggagaaaaaaatattgggagggaagttacagtcaataat
gcgagttctgtgcggggaagctttagcaggggacatttggtctatgctcc
acgcacttacccttcccgtccaactctccctcttttcttccctcccctgc
actccctcagGCAATGAAGACCGGCACCACTATTGCAGGCGTCGTTTTTA
AGGATGGCGTCGTCCTGGGTGCCGACACGCGTGCCACAGGCGGCACTGAA
GTTGCTGACAAAAACTGTGAGAAGATTCACTATTTGGCTCCCAATATTTA
CTGTTGTGGTGCGGGCACTGCGGCGGACACCGAGAAGACGACGGAGATCA
TCAGgtaatggaggaagtggagggagggtgcgaggaaagaagaaagggga
ggaatcgctctcgtatgtgaatgtgtctaaagaagacataccaacccccc
ttccctaatatctctgcaatgacagCTCGCAACTCGACCTTCTCCGCCTT
TCCACCGGCTCGCCCTCCCGCGTAGTAACGGCCTGCACGATGCTGAAACG
CATGCTCTTCCGTTACCAGGGCCACGTGTCCGCTGCCCTTGTCTTGGGAG
GCGTAGACAGCTCAGGAGCGCATCTATACCAGATTTATCCACACGGATCG
ACGGACAAGAACCCGTATGTGACCATGGGCAGTGGGAGTCTGGCGGCCAT
GAGCGTGTTTGAGACCGGCTTCAAAGAAGACATGAGCGAGgtaagaatct
ttaaccttccttccctccttcctttcttccttccatctccttcttgtagt
tgcagtcgctatttgtcgtcccaacggcgaatcagtcattagcttcagcc
tcagcagcacgaccgacatcctcctccctcattatcctccgccactgtct
cacctccctccctccctccttccctccctccctttctttcccatcgaagG
CGGAAGCCATGGAGCTGGTTAAGGAAGCCATCTTAGCAGGCATCTTCAAC
GACCTCGGATCGGGCTCCAATGTCGACCTGACCATCATCCGCAAATCCGG
GGAGGTTAGCGTCTTGCGTGGCTATGTCAGCCCCAACGATCTCGACCCTC
TTCGTACCTCCTACGCTCGTCCTTCTGCTCTGACCATCCCTGCGGGCGCC
ACTGCGGTAACGGCCTCTCACTTCGAGCCGGCAAGGAAGGCGCTAGAGGG
CTTGGTGATTGAGGATGCCACGGCCATGACATTTTGAGGAAGGGGAGAGA
AAATAAAGGAGGGGGAGGGGGCGTGGCAGGTTGTGCGACTGTCCTGATGC
GAGGGGAGAAAGAGAAGGAGGAGGCGGAGGCGGAGGCTGGGAAAGTCTGA
ACGGAGGAGTAGGAAAAAAGGGAGGAAGCGGGTTGGCCGATGGGCCAAGA
GGAGAAGGAGGAGGTGGGCACGTGTGTGTGTGAGTAGGGGGAGCAGACGG
GCAGAAGGCGGACAGGCATGAACGCCAACGGCAAAAAACAAGAGAAACAT
GGATTT
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protein sequence of NO16G00520.1

>NO16G00520.1-protein ID=NO16G00520.1-protein|Name=NO16G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MRGGSATQSQRGALKEDAPGFNFDNYSRNASLPTEKTLHLPSAMKTGTTI
AGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTE
KTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGV
DSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAME
LVKEAILAGIFNDLGSGSNVDLTIIRKSGEVSVLRGYVSPNDLDPLRTSY
ARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAMTF*
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Synonyms
Publications