NO16G00520.1, NO16G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00520.1
Unique NameNO16G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr16:181655..183710 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:181655..183710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00520.1 vs.
Match: XP_005856053.1 (20S proteasome subunit beta 2 [Nannochloropsis gaditana CCMP526]; EKU20300.1 20S proteasome subunit beta 2 [Nannochloropsis gaditana CCMP526]; EWM24068.1 26s proteasome beta type 7 subunit [Nannochloropsis gaditana])

HSP 1 Score: 521.5 bits (1342), Expect = 1.600e-144
Identity = 258/290 (88.97%), Postives = 277/290 (95.52%), Query Frame = 0 
Query:    1 MRGGSATQSQRGALKEDAPGFNFDNYSRNASLPTEKTLHLPSAMKTGTTIAGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAMELVKEAILAGIFNDLGSGSNVDLTIIRKSGEVSVLRGYVSPNDLDPLRTSYARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAMTF 291
            M G S  QS RGALKED PGFNFDNY+RNASLPTE T+HLPSAMKTGTTIAGV FKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTE+ISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDM+EAEA+ELVKEAILAGI+NDLGSGSNVDLTIIR++GEV+VLRGY++PND++PLRTSY RP+AL++PAGATAV ++H +PAR  LEGLVIEDATAMTF
Sbjct:    1 MHGESGKQSLRGALKEDVPGFNFDNYARNASLPTETTMHLPSAMKTGTTIAGVTFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTEKTTEMISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGVDSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMTEAEAIELVKEAILAGIYNDLGSGSNVDLTIIRRNGEVTVLRGYLTPNDVEPLRTSYKRPAALSVPAGATAVLSTHMDPARPGLEGLVIEDATAMTF 290
The following BLAST results are available for this feature:
BLAST of NO16G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856053.11.600e-14488.9720S proteasome subunit beta 2 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00520NO16G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00520.1NO16G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00520.1.cds1NO16G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00520.1.cds2NO16G00520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00520.1.cds3NO16G00520.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00520.1.cds4NO16G00520.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00520.1 ID=NO16G00520.1|Name=NO16G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp
TGGAAGTCTTCTACGTTCTTGGATGGGGTATGCCTTTCCGAGACTAGAGC
TTGTGTTGAAGAGGAAAAGCAAGAAGATGAGGAAGGGGAGGAAGTGAGAG
TGAAGGAAGAGGAGATAGTGGTTGTGGACTTAGCGGTGGTAGCAGACCCA
GGCGGTGGCATTGTTTTCTTTGCCTGCCTCGTCGCTATCCCAGCTTCATT
ATGACGAAGGGGGCCAGGGAATGAAGGAATGTCTCTGACTTGCTGTCTGT
ACTACACGGCCCACTCACTTAATACGTGCATTTACAGGGTCTAGGCACCT
TTGATTCCGATGGCACTTTGCGTAGCACCCCCGCAAACCAATCCTTTACG
ATAGCGAGTAACCCACCATCACCTCCTTCCTTGCTTCCCCTACACAGACA
CTTCCACCCACCCACATCACGATGCGCGGCGGTTCAGCGACCCAATCCCA
ACGCGGGGCCTTGAAGGAGGATGCACCTGGCTTTAATTTTGACAATTATT
CCAGAAATGCCTCCTTGCCAACGGAGAAGACTCTGCACTTGCCCTCGGCA
ATGAAGACCGGCACCACTATTGCAGGCGTCGTTTTTAAGGATGGCGTCGT
CCTGGGTGCCGACACGCGTGCCACAGGCGGCACTGAAGTTGCTGACAAAA
ACTGTGAGAAGATTCACTATTTGGCTCCCAATATTTACTGTTGTGGTGCG
GGCACTGCGGCGGACACCGAGAAGACGACGGAGATCATCAGCTCGCAACT
CGACCTTCTCCGCCTTTCCACCGGCTCGCCCTCCCGCGTAGTAACGGCCT
GCACGATGCTGAAACGCATGCTCTTCCGTTACCAGGGCCACGTGTCCGCT
GCCCTTGTCTTGGGAGGCGTAGACAGCTCAGGAGCGCATCTATACCAGAT
TTATCCACACGGATCGACGGACAAGAACCCGTATGTGACCATGGGCAGTG
GGAGTCTGGCGGCCATGAGCGTGTTTGAGACCGGCTTCAAAGAAGACATG
AGCGAGGCGGAAGCCATGGAGCTGGTTAAGGAAGCCATCTTAGCAGGCAT
CTTCAACGACCTCGGATCGGGCTCCAATGTCGACCTGACCATCATCCGCA
AATCCGGGGAGGTTAGCGTCTTGCGTGGCTATGTCAGCCCCAACGATCTC
GACCCTCTTCGTACCTCCTACGCTCGTCCTTCTGCTCTGACCATCCCTGC
GGGCGCCACTGCGGTAACGGCCTCTCACTTCGAGCCGGCAAGGAAGGCGC
TAGAGGGCTTGGTGATTGAGGATGCCACGGCCATGACATTTTGAGGAAGG
GGAGAGAAAATAAAGGAGGGGGAGGGGGCGTGGCAGGTTGTGCGACTGTC
CTGATGCGAGGGGAGAAAGAGAAGGAGGAGGCGGAGGCGGAGGCTGGGAA
AGTCTGAACGGAGGAGTAGGAAAAAAGGGAGGAAGCGGGTTGGCCGATGG
GCCAAGAGGAGAAGGAGGAGGTGGGCACGTGTGTGTGTGAGTAGGGGGAG
CAGACGGGCAGAAGGCGGACAGGCATGAACGCCAACGGCAAAAAACAAGA
GAAACATGGATTT
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protein sequence of NO16G00520.1

>NO16G00520.1-protein ID=NO16G00520.1-protein|Name=NO16G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MRGGSATQSQRGALKEDAPGFNFDNYSRNASLPTEKTLHLPSAMKTGTTI
AGVVFKDGVVLGADTRATGGTEVADKNCEKIHYLAPNIYCCGAGTAADTE
KTTEIISSQLDLLRLSTGSPSRVVTACTMLKRMLFRYQGHVSAALVLGGV
DSSGAHLYQIYPHGSTDKNPYVTMGSGSLAAMSVFETGFKEDMSEAEAME
LVKEAILAGIFNDLGSGSNVDLTIIRKSGEVSVLRGYVSPNDLDPLRTSY
ARPSALTIPAGATAVTASHFEPARKALEGLVIEDATAMTF*
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mRNA from alignment at chr16:181655..183710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00520.1 ID=NO16G00520.1|Name=NO16G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2056bp|location=Sequence derived from alignment at chr16:181655..183710- (Nannochloropsis oceanica)
TGGAAGTCTTCTACGTTCTTGGATGGGGTATGCCTTTCCGAGACTAGAGC
TTGTGTTGAAGAGGAAAAGCAAGAAGATGAGGAAGGGGAGGAAGTGAGAG
TGAAGGAAGAGGAGATAGTGGTTGTGGACTTAGCGGTGGTAGCAGACCCA
GGCGGTGGCATTGTTTTCTTTGCCTGCCTCGTCGCTATCCCAGCTTCATT
ATGACGAAGGGGGCCAGGGAATGAAGGAATGTCTCTGACTTGCTGTCTGT
ACTACACGGCCCACTCACTTAATACGTGCATTTACAGGGTCTAGGCACCT
TTGATTCCGATGGCACTTTGCGTAGCACCCCCGCAAACCAATCCTTTACG
ATAGCGAGTAACCCACCATCACCTCCTTCCTTGCTTCCCCTACACAGACA
CTTCCACCCACCCACATCACGATGCGCGGCGGTTCAGCGACCCAATCCCA
ACGCGGGGCCTTGAAGGAGGATGCACCTGGCTTTAATTTTGACAATTATT
CCAGAAATGCCTCCTTGCCAACGGAGAAGACTCTGCACTTGCCCTCGGTA
CGTGGAAGGAAGGAGAAAAAAATATTGGGAGGGAAGTTACAGTCAATAAT
GCGAGTTCTGTGCGGGGAAGCTTTAGCAGGGGACATTTGGTCTATGCTCC
ACGCACTTACCCTTCCCGTCCAACTCTCCCTCTTTTCTTCCCTCCCCTGC
ACTCCCTCAGGCAATGAAGACCGGCACCACTATTGCAGGCGTCGTTTTTA
AGGATGGCGTCGTCCTGGGTGCCGACACGCGTGCCACAGGCGGCACTGAA
GTTGCTGACAAAAACTGTGAGAAGATTCACTATTTGGCTCCCAATATTTA
CTGTTGTGGTGCGGGCACTGCGGCGGACACCGAGAAGACGACGGAGATCA
TCAGGTAATGGAGGAAGTGGAGGGAGGGTGCGAGGAAAGAAGAAAGGGGA
GGAATCGCTCTCGTATGTGAATGTGTCTAAAGAAGACATACCAACCCCCC
TTCCCTAATATCTCTGCAATGACAGCTCGCAACTCGACCTTCTCCGCCTT
TCCACCGGCTCGCCCTCCCGCGTAGTAACGGCCTGCACGATGCTGAAACG
CATGCTCTTCCGTTACCAGGGCCACGTGTCCGCTGCCCTTGTCTTGGGAG
GCGTAGACAGCTCAGGAGCGCATCTATACCAGATTTATCCACACGGATCG
ACGGACAAGAACCCGTATGTGACCATGGGCAGTGGGAGTCTGGCGGCCAT
GAGCGTGTTTGAGACCGGCTTCAAAGAAGACATGAGCGAGGTAAGAATCT
TTAACCTTCCTTCCCTCCTTCCTTTCTTCCTTCCATCTCCTTCTTGTAGT
TGCAGTCGCTATTTGTCGTCCCAACGGCGAATCAGTCATTAGCTTCAGCC
TCAGCAGCACGACCGACATCCTCCTCCCTCATTATCCTCCGCCACTGTCT
CACCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTTTCTTTCCCATCGAAGG
CGGAAGCCATGGAGCTGGTTAAGGAAGCCATCTTAGCAGGCATCTTCAAC
GACCTCGGATCGGGCTCCAATGTCGACCTGACCATCATCCGCAAATCCGG
GGAGGTTAGCGTCTTGCGTGGCTATGTCAGCCCCAACGATCTCGACCCTC
TTCGTACCTCCTACGCTCGTCCTTCTGCTCTGACCATCCCTGCGGGCGCC
ACTGCGGTAACGGCCTCTCACTTCGAGCCGGCAAGGAAGGCGCTAGAGGG
CTTGGTGATTGAGGATGCCACGGCCATGACATTTTGAGGAAGGGGAGAGA
AAATAAAGGAGGGGGAGGGGGCGTGGCAGGTTGTGCGACTGTCCTGATGC
GAGGGGAGAAAGAGAAGGAGGAGGCGGAGGCGGAGGCTGGGAAAGTCTGA
ACGGAGGAGTAGGAAAAAAGGGAGGAAGCGGGTTGGCCGATGGGCCAAGA
GGAGAAGGAGGAGGTGGGCACGTGTGTGTGTGAGTAGGGGGAGCAGACGG
GCAGAAGGCGGACAGGCATGAACGCCAACGGCAAAAAACAAGAGAAACAT
GGATTT
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Coding sequence (CDS) from alignment at chr16:181655..183710-

>NO16G00520.1 ID=NO16G00520.1|Name=NO16G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr16:181655..183710- (Nannochloropsis oceanica)
ATGCGCGGCGGTTCAGCGACCCAATCCCAACGCGGGGCCTTGAAGGAGGA
TGCACCTGGCTTTAATTTTGACAATTATTCCAGAAATGCCTCCTTGCCAA
CGGAGAAGACTCTGCACTTGCCCTCGGCAATGAAGACCGGCACCACTATT
GCAGGCGTCGTTTTTAAGGATGGCGTCGTCCTGGGTGCCGACACGCGTGC
CACAGGCGGCACTGAAGTTGCTGACAAAAACTGTGAGAAGATTCACTATT
TGGCTCCCAATATTTACTGTTGTGGTGCGGGCACTGCGGCGGACACCGAG
AAGACGACGGAGATCATCAGCTCGCAACTCGACCTTCTCCGCCTTTCCAC
CGGCTCGCCCTCCCGCGTAGTAACGGCCTGCACGATGCTGAAACGCATGC
TCTTCCGTTACCAGGGCCACGTGTCCGCTGCCCTTGTCTTGGGAGGCGTA
GACAGCTCAGGAGCGCATCTATACCAGATTTATCCACACGGATCGACGGA
CAAGAACCCGTATGTGACCATGGGCAGTGGGAGTCTGGCGGCCATGAGCG
TGTTTGAGACCGGCTTCAAAGAAGACATGAGCGAGGCGGAAGCCATGGAG
CTGGTTAAGGAAGCCATCTTAGCAGGCATCTTCAACGACCTCGGATCGGG
CTCCAATGTCGACCTGACCATCATCCGCAAATCCGGGGAGGTTAGCGTCT
TGCGTGGCTATGTCAGCCCCAACGATCTCGACCCTCTTCGTACCTCCTAC
GCTCGTCCTTCTGCTCTGACCATCCCTGCGGGCGCCACTGCGGTAACGGC
CTCTCACTTCGAGCCGGCAAGGAAGGCGCTAGAGGGCTTGGTGATTGAGG
ATGCCACGGCCATGACATTTTGA
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Synonyms
Publications