NO16G00400, NO16G00400 (gene) Nannochloropsis oceanica

Overview
NameNO16G00400
Unique NameNO16G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1860
Alignment locationchr16:149768..151627 +

Link to JBrowse

Properties
Property NameValue
DescriptionSerine/arginine repetitive matrix protein 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:149768..151627 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036483PWI_dom_sf
IPR002483PWI_dom
Homology
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: XP_005856056.1 (serine/arginine repetitive matrix protein 1 [Nannochloropsis gaditana CCMP526] >EKU20303.1 serine/arginine repetitive matrix protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 243.0 bits (619), Expect = 1.900e-60
Identity = 121/130 (93.08%), Postives = 126/130 (96.92%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M+SGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQL++FLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKAS FV ELWALL+DAQ NPSGIP+ FIEAKKKEL
Sbjct:    1 MASGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLVEFLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKASTFVTELWALLVDAQRNPSGIPTAFIEAKKKEL 130
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: XP_019568961.1 (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Rhinolophus sinicus])

HSP 1 Score: 141.7 bits (356), Expect = 5.900e-30
Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N SGIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENISGIPSAFLELKKEEI 131
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: XP_019568933.1 (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1 [Rhinolophus sinicus] >XP_019568940.1 PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1 [Rhinolophus sinicus] >XP_019568952.1 PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1 [Rhinolophus sinicus])

HSP 1 Score: 141.7 bits (356), Expect = 5.900e-30
Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N SGIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENISGIPSAFLELKKEEI 131
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: XP_019568968.1 (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X3 [Rhinolophus sinicus])

HSP 1 Score: 141.7 bits (356), Expect = 5.900e-30
Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N SGIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENISGIPSAFLELKKEEI 131
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: XP_019568975.1 (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X4 [Rhinolophus sinicus])

HSP 1 Score: 141.7 bits (356), Expect = 5.900e-30
Identity = 67/131 (51.15%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N SGIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENISGIPSAFLELKKEEI 131
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: AAH36187.1 (Serine/arginine repetitive matrix 1 [Homo sapiens])

HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N +GIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEI 131
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: BAB25575.1 (unnamed protein product, partial [Mus musculus])

HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N +GIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEI 131
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: XP_001106172.1 (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X3 [Macaca mulatta])

HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N +GIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEI 131
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: DAA32178.1 (TPA: serine/arginine repetitive matrix 1 [Bos taurus])

HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N +GIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEI 131
[Close]
BLAST of NO16G00400 vs. NCBI_GenBank
Match: EAW95140.1 (serine/arginine repetitive matrix 1, isoform CRA_c [Homo sapiens])

HSP 1 Score: 140.6 bits (353), Expect = 1.300e-29
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLE-SDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKEL 131
            M +GFFRGT+A+QD RF N +K+L+K++KFA  L +KVD+ KVN++VIK WIT ++ + LGFE++V I  + N LE  + D+K +Q+  T F+    A  F+ ELW LLL AQ+N +GIPS F+E KK+E+
Sbjct:    1 MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEI 131
The following BLAST results are available for this feature:
BLAST of NO16G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856056.11.900e-6093.08serine/arginine repetitive matrix protein 1 [Nanno... [more]
XP_019568961.15.900e-3051.15PREDICTED: serine/arginine repetitive matrix prote... [more]
XP_019568933.15.900e-3051.15PREDICTED: serine/arginine repetitive matrix prote... [more]
XP_019568968.15.900e-3051.15PREDICTED: serine/arginine repetitive matrix prote... [more]
XP_019568975.15.900e-3051.15PREDICTED: serine/arginine repetitive matrix prote... [more]
AAH36187.11.300e-2950.38Serine/arginine repetitive matrix 1 [Homo sapiens][more]
BAB25575.11.300e-2950.38unnamed protein product, partial [Mus musculus][more]
XP_001106172.11.300e-2950.38PREDICTED: serine/arginine repetitive matrix prote... [more]
DAA32178.11.300e-2950.38TPA: serine/arginine repetitive matrix 1 [Bos taur... [more]
EAW95140.11.300e-2950.38serine/arginine repetitive matrix 1, isoform CRA_c... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00400.1NO16G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631173gene_5918Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00400.1NO16G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00400 ID=NO16G00400|Name=NO16G00400|organism=Nannochloropsis oceanica|type=gene|length=1860bp
ATGAGCTCAGGGTTTTTCCGAGGGACGACCGCGGACCAGGATGCCCGCTT
TGGGAACGCCGAGAAACGCCTCATGAAGAAGATGAAATTTGCCAGTgtac
gtatagagagggcgaggagggaggaaggggaatgaaattggtggtggtca
gtcagctcctgacgacgactgcgtaactcaccggtcccttccctcccttc
cctttcttccttttccccctccctcctaagATCTTATCGGAGAAGGTGGA
CCTCCGCAAGGTGAACATGGATGTGATCAAGCGATGGATTACTGATCAGC
TCATTGATTTTTTGGGGTTCGAGGAGGAGGTGACCATTGGGCTTGTTATT
AACTATTTGGAGAGTgtgagtgcaggagggagggagggagggagggagga
agaaagggagggagggagggagaaataaagggagggatggcattcataca
ggtatacataacacgagtttcttcctcccttggtgtaatgggatgcagcg
cagccatctgatacctcgtcgctcgctctcaacagtcgcatcttaccccc
cctccctccctctctccctccttccctccctccctccctccctcccattc
catccccagGATACGGATGCCAAAAAGCTGCAGTTGCAATGCACGGAATT
TATCGGTAAGAATAAGGCGTCCCGATTCGTGGCTGAGCTATGGGCGCTAT
TGTTGGATGCACAGGACAATCCGTCGGGGATTCCGTCGTGCTTTATCGAA
GCGAAGAAAAAGGAGCTGGCCGAGAGGAGCGAGAGGGACAAGCAGCAGCA
GCAGCATCAGCAGCAGCAACGGGAGCAAGCGGCAGCGGCCTTGGAGGCGG
CTCGGGCGATCAGTGCGAAGAGACGGGAAGAGATGGAGGAAGGTGGGGAA
GGAGGGAGGCAGGGAAGGAGGGGAGGGAAGACGTCACGGTTTTCGGCGCC
GATGGTGGAGGAAGAGGGTGAAGGAGGAGGAGGGATGCCAGCGGGATTAT
CCCCGGCAGTCCAAACTGCCATTGCTGGCGCCCGTGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTAGCAGGAGGAGGAGGGAAGGAGGCAGGGAGTGATCG
AGGAAGGGAGCGACGTCGCTCTCCCTCCCGGTCTCGCTCGCATTCGTACG
GGCGGAGGCAAGGAGGAAGGGAGGGAGGGAGGGACCGAAGGGACAGAGGA
GGGGGCTATCACCGTCGCCGTTCCCTCTCCCGATCTCTTTCCCCTCGCCC
CTCGTACCGTCGACATGGGCGCAGCCCTTCCCATTCTCCTTCTTCTCCGG
TCTCCTGGTATGGGAGTGGAAGGAGGGAGGAGCGATCCGCTCGACGAAGG
AGTAGGAGTCGGAGTCGAGGGAGGGATCGAGGAAGAGCAGGAGGAGGAGC
AGGAGGAGGAGGAGGGGAAGGGAGGGGACGACGCGGGCGCTCTCCAACAC
CCCCACGCCGGCAGCGAGATCAGAAAGATGGGGAGAGGAAGAGGGGGGAG
GATGGGCGAAAGCGTGAAAGGGAAATGAAGACGGGACGCGAGGAAGAGGA
TGGAGGAAGGAGGATGAGAAGAAGTAAAGGAGGGAAGGAGGAGGAGGAGG
AGGATGCCCGGAAGGAAAGGAAGCGGCTAAAGAAGGAGAAGAAGGAGAAG
AAGAAGGAGAAGAAGGAGAAGAGGAAAGAGAAGGGGGAGAAGAAGCACCA
TAGCGAAAGAGGTAGGGAGATTGAAGGCGAAAAGGAGGAGGGGAAGGCCG
CCGCGGGGTCAGAGGACGACACGGAGGGACCCCGGTCTCCGCCGCCGACT
CCTGTCGAGGAGTTGGAAGTGAAAGATGTGGCGGTCGAAGGGACGGGGGA
AGAGGAGTAA
back to top

protein sequence of NO16G00400.1

>NO16G00400.1-protein ID=NO16G00400.1-protein|Name=NO16G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKR
WITDQLIDFLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKASRF
VAELWALLLDAQDNPSGIPSCFIEAKKKELAERSERDKQQQQHQQQQREQ
AAAALEAARAISAKRREEMEEGGEGGRQGRRGGKTSRFSAPMVEEEGEGG
GGMPAGLSPAVQTAIAGARAAAAAAAAAVAGGGGKEAGSDRGRERRRSPS
RSRSHSYGRRQGGREGGRDRRDRGGGYHRRRSLSRSLSPRPSYRRHGRSP
SHSPSSPVSWYGSGRREERSARRRSRSRSRGRDRGRAGGGAGGGGGEGRG
RRGRSPTPPRRQRDQKDGERKRGEDGRKREREMKTGREEEDGGRRMRRSK
GGKEEEEEDARKERKRLKKEKKEKKKEKKEKRKEKGEKKHHSERGREIEG
EKEEGKAAAGSEDDTEGPRSPPPTPVEELEVKDVAVEGTGEEE*
back to top
Synonyms
Publications