NO16G00400.1, NO16G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00400.1
Unique NameNO16G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1482
Alignment locationchr16:149768..151627 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:149768..151627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00400.1 vs.
Match: XP_005856056.1 (serine/arginine repetitive matrix protein 1 [Nannochloropsis gaditana CCMP526]; EKU20303.1 serine/arginine repetitive matrix protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 250.0 bits (637), Expect = 1.500e-62
Identity = 132/164 (80.49%), Postives = 147/164 (89.63%), Query Frame = 0 
Query:    1 MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLIDFLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKASRFVAELWALLLDAQDNPSGIPSCFIEAKKKELAERSERDKQQQQHQQQQREQAAAALEAARAISAK 165
            M+SGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQL++FLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKAS FV ELWALL+DAQ NPSGIP+ FIEAKKKELAER+ +       ++++    AAA+EAA+ IS++
Sbjct:    1 MASGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKRWITDQLVEFLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKASTFVTELWALLVDAQRNPSGIPTAFIEAKKKELAERTRK-------EEEEGGAVAAAMEAAKMISSE 157
The following BLAST results are available for this feature:
BLAST of NO16G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856056.11.500e-6280.49serine/arginine repetitive matrix protein 1 [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00400NO16G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00400.1NO16G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00400.1.cds1NO16G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00400.1.cds2NO16G00400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00400.1.cds3NO16G00400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00400.1 ID=NO16G00400.1|Name=NO16G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
ATGAGCTCAGGGTTTTTCCGAGGGACGACCGCGGACCAGGATGCCCGCTT
TGGGAACGCCGAGAAACGCCTCATGAAGAAGATGAAATTTGCCAGTATCT
TATCGGAGAAGGTGGACCTCCGCAAGGTGAACATGGATGTGATCAAGCGA
TGGATTACTGATCAGCTCATTGATTTTTTGGGGTTCGAGGAGGAGGTGAC
CATTGGGCTTGTTATTAACTATTTGGAGAGTGATACGGATGCCAAAAAGC
TGCAGTTGCAATGCACGGAATTTATCGGTAAGAATAAGGCGTCCCGATTC
GTGGCTGAGCTATGGGCGCTATTGTTGGATGCACAGGACAATCCGTCGGG
GATTCCGTCGTGCTTTATCGAAGCGAAGAAAAAGGAGCTGGCCGAGAGGA
GCGAGAGGGACAAGCAGCAGCAGCAGCATCAGCAGCAGCAACGGGAGCAA
GCGGCAGCGGCCTTGGAGGCGGCTCGGGCGATCAGTGCGAAGAGACGGGA
AGAGATGGAGGAAGGTGGGGAAGGAGGGAGGCAGGGAAGGAGGGGAGGGA
AGACGTCACGGTTTTCGGCGCCGATGGTGGAGGAAGAGGGTGAAGGAGGA
GGAGGGATGCCAGCGGGATTATCCCCGGCAGTCCAAACTGCCATTGCTGG
CGCCCGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGGAGGAGGAG
GGAAGGAGGCAGGGAGTGATCGAGGAAGGGAGCGACGTCGCTCTCCCTCC
CGGTCTCGCTCGCATTCGTACGGGCGGAGGCAAGGAGGAAGGGAGGGAGG
GAGGGACCGAAGGGACAGAGGAGGGGGCTATCACCGTCGCCGTTCCCTCT
CCCGATCTCTTTCCCCTCGCCCCTCGTACCGTCGACATGGGCGCAGCCCT
TCCCATTCTCCTTCTTCTCCGGTCTCCTGGTATGGGAGTGGAAGGAGGGA
GGAGCGATCCGCTCGACGAAGGAGTAGGAGTCGGAGTCGAGGGAGGGATC
GAGGAAGAGCAGGAGGAGGAGCAGGAGGAGGAGGAGGGGAAGGGAGGGGA
CGACGCGGGCGCTCTCCAACACCCCCACGCCGGCAGCGAGATCAGAAAGA
TGGGGAGAGGAAGAGGGGGGAGGATGGGCGAAAGCGTGAAAGGGAAATGA
AGACGGGACGCGAGGAAGAGGATGGAGGAAGGAGGATGAGAAGAAGTAAA
GGAGGGAAGGAGGAGGAGGAGGAGGATGCCCGGAAGGAAAGGAAGCGGCT
AAAGAAGGAGAAGAAGGAGAAGAAGAAGGAGAAGAAGGAGAAGAGGAAAG
AGAAGGGGGAGAAGAAGCACCATAGCGAAAGAGGTAGGGAGATTGAAGGC
GAAAAGGAGGAGGGGAAGGCCGCCGCGGGGTCAGAGGACGACACGGAGGG
ACCCCGGTCTCCGCCGCCGACTCCTGTCGAGGAGTTGGAAGTGAAAGATG
TGGCGGTCGAAGGGACGGGGGAAGAGGAGTAA
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protein sequence of NO16G00400.1

>NO16G00400.1-protein ID=NO16G00400.1-protein|Name=NO16G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MSSGFFRGTTADQDARFGNAEKRLMKKMKFASILSEKVDLRKVNMDVIKR
WITDQLIDFLGFEEEVTIGLVINYLESDTDAKKLQLQCTEFIGKNKASRF
VAELWALLLDAQDNPSGIPSCFIEAKKKELAERSERDKQQQQHQQQQREQ
AAAALEAARAISAKRREEMEEGGEGGRQGRRGGKTSRFSAPMVEEEGEGG
GGMPAGLSPAVQTAIAGARAAAAAAAAAVAGGGGKEAGSDRGRERRRSPS
RSRSHSYGRRQGGREGGRDRRDRGGGYHRRRSLSRSLSPRPSYRRHGRSP
SHSPSSPVSWYGSGRREERSARRRSRSRSRGRDRGRAGGGAGGGGGEGRG
RRGRSPTPPRRQRDQKDGERKRGEDGRKREREMKTGREEEDGGRRMRRSK
GGKEEEEEDARKERKRLKKEKKEKKKEKKEKRKEKGEKKHHSERGREIEG
EKEEGKAAAGSEDDTEGPRSPPPTPVEELEVKDVAVEGTGEEE*
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mRNA from alignment at chr16:149768..151627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00400.1 ID=NO16G00400.1|Name=NO16G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp|location=Sequence derived from alignment at chr16:149768..151627+ (Nannochloropsis oceanica)
ATGAGCTCAGGGTTTTTCCGAGGGACGACCGCGGACCAGGATGCCCGCTT
TGGGAACGCCGAGAAACGCCTCATGAAGAAGATGAAATTTGCCAGTGTAC
GTATAGAGAGGGCGAGGAGGGAGGAAGGGGAATGAAATTGGTGGTGGTCA
GTCAGCTCCTGACGACGACTGCGTAACTCACCGGTCCCTTCCCTCCCTTC
CCTTTCTTCCTTTTCCCCCTCCCTCCTAAGATCTTATCGGAGAAGGTGGA
CCTCCGCAAGGTGAACATGGATGTGATCAAGCGATGGATTACTGATCAGC
TCATTGATTTTTTGGGGTTCGAGGAGGAGGTGACCATTGGGCTTGTTATT
AACTATTTGGAGAGTGTGAGTGCAGGAGGGAGGGAGGGAGGGAGGGAGGA
AGAAAGGGAGGGAGGGAGGGAGAAATAAAGGGAGGGATGGCATTCATACA
GGTATACATAACACGAGTTTCTTCCTCCCTTGGTGTAATGGGATGCAGCG
CAGCCATCTGATACCTCGTCGCTCGCTCTCAACAGTCGCATCTTACCCCC
CCTCCCTCCCTCTCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCATTC
CATCCCCAGGATACGGATGCCAAAAAGCTGCAGTTGCAATGCACGGAATT
TATCGGTAAGAATAAGGCGTCCCGATTCGTGGCTGAGCTATGGGCGCTAT
TGTTGGATGCACAGGACAATCCGTCGGGGATTCCGTCGTGCTTTATCGAA
GCGAAGAAAAAGGAGCTGGCCGAGAGGAGCGAGAGGGACAAGCAGCAGCA
GCAGCATCAGCAGCAGCAACGGGAGCAAGCGGCAGCGGCCTTGGAGGCGG
CTCGGGCGATCAGTGCGAAGAGACGGGAAGAGATGGAGGAAGGTGGGGAA
GGAGGGAGGCAGGGAAGGAGGGGAGGGAAGACGTCACGGTTTTCGGCGCC
GATGGTGGAGGAAGAGGGTGAAGGAGGAGGAGGGATGCCAGCGGGATTAT
CCCCGGCAGTCCAAACTGCCATTGCTGGCGCCCGTGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTAGCAGGAGGAGGAGGGAAGGAGGCAGGGAGTGATCG
AGGAAGGGAGCGACGTCGCTCTCCCTCCCGGTCTCGCTCGCATTCGTACG
GGCGGAGGCAAGGAGGAAGGGAGGGAGGGAGGGACCGAAGGGACAGAGGA
GGGGGCTATCACCGTCGCCGTTCCCTCTCCCGATCTCTTTCCCCTCGCCC
CTCGTACCGTCGACATGGGCGCAGCCCTTCCCATTCTCCTTCTTCTCCGG
TCTCCTGGTATGGGAGTGGAAGGAGGGAGGAGCGATCCGCTCGACGAAGG
AGTAGGAGTCGGAGTCGAGGGAGGGATCGAGGAAGAGCAGGAGGAGGAGC
AGGAGGAGGAGGAGGGGAAGGGAGGGGACGACGCGGGCGCTCTCCAACAC
CCCCACGCCGGCAGCGAGATCAGAAAGATGGGGAGAGGAAGAGGGGGGAG
GATGGGCGAAAGCGTGAAAGGGAAATGAAGACGGGACGCGAGGAAGAGGA
TGGAGGAAGGAGGATGAGAAGAAGTAAAGGAGGGAAGGAGGAGGAGGAGG
AGGATGCCCGGAAGGAAAGGAAGCGGCTAAAGAAGGAGAAGAAGGAGAAG
AAGAAGGAGAAGAAGGAGAAGAGGAAAGAGAAGGGGGAGAAGAAGCACCA
TAGCGAAAGAGGTAGGGAGATTGAAGGCGAAAAGGAGGAGGGGAAGGCCG
CCGCGGGGTCAGAGGACGACACGGAGGGACCCCGGTCTCCGCCGCCGACT
CCTGTCGAGGAGTTGGAAGTGAAAGATGTGGCGGTCGAAGGGACGGGGGA
AGAGGAGTAA
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Coding sequence (CDS) from alignment at chr16:149768..151627+

>NO16G00400.1 ID=NO16G00400.1|Name=NO16G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1482bp|location=Sequence derived from alignment at chr16:149768..151627+ (Nannochloropsis oceanica)
ATGAGCTCAGGGTTTTTCCGAGGGACGACCGCGGACCAGGATGCCCGCTT
TGGGAACGCCGAGAAACGCCTCATGAAGAAGATGAAATTTGCCAGTATCT
TATCGGAGAAGGTGGACCTCCGCAAGGTGAACATGGATGTGATCAAGCGA
TGGATTACTGATCAGCTCATTGATTTTTTGGGGTTCGAGGAGGAGGTGAC
CATTGGGCTTGTTATTAACTATTTGGAGAGTGATACGGATGCCAAAAAGC
TGCAGTTGCAATGCACGGAATTTATCGGTAAGAATAAGGCGTCCCGATTC
GTGGCTGAGCTATGGGCGCTATTGTTGGATGCACAGGACAATCCGTCGGG
GATTCCGTCGTGCTTTATCGAAGCGAAGAAAAAGGAGCTGGCCGAGAGGA
GCGAGAGGGACAAGCAGCAGCAGCAGCATCAGCAGCAGCAACGGGAGCAA
GCGGCAGCGGCCTTGGAGGCGGCTCGGGCGATCAGTGCGAAGAGACGGGA
AGAGATGGAGGAAGGTGGGGAAGGAGGGAGGCAGGGAAGGAGGGGAGGGA
AGACGTCACGGTTTTCGGCGCCGATGGTGGAGGAAGAGGGTGAAGGAGGA
GGAGGGATGCCAGCGGGATTATCCCCGGCAGTCCAAACTGCCATTGCTGG
CGCCCGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGGAGGAGGAG
GGAAGGAGGCAGGGAGTGATCGAGGAAGGGAGCGACGTCGCTCTCCCTCC
CGGTCTCGCTCGCATTCGTACGGGCGGAGGCAAGGAGGAAGGGAGGGAGG
GAGGGACCGAAGGGACAGAGGAGGGGGCTATCACCGTCGCCGTTCCCTCT
CCCGATCTCTTTCCCCTCGCCCCTCGTACCGTCGACATGGGCGCAGCCCT
TCCCATTCTCCTTCTTCTCCGGTCTCCTGGTATGGGAGTGGAAGGAGGGA
GGAGCGATCCGCTCGACGAAGGAGTAGGAGTCGGAGTCGAGGGAGGGATC
GAGGAAGAGCAGGAGGAGGAGCAGGAGGAGGAGGAGGGGAAGGGAGGGGA
CGACGCGGGCGCTCTCCAACACCCCCACGCCGGCAGCGAGATCAGAAAGA
TGGGGAGAGGAAGAGGGGGGAGGATGGGCGAAAGCGTGAAAGGGAAATGA
AGACGGGACGCGAGGAAGAGGATGGAGGAAGGAGGATGAGAAGAAGTAAA
GGAGGGAAGGAGGAGGAGGAGGAGGATGCCCGGAAGGAAAGGAAGCGGCT
AAAGAAGGAGAAGAAGGAGAAGAAGAAGGAGAAGAAGGAGAAGAGGAAAG
AGAAGGGGGAGAAGAAGCACCATAGCGAAAGAGGTAGGGAGATTGAAGGC
GAAAAGGAGGAGGGGAAGGCCGCCGCGGGGTCAGAGGACGACACGGAGGG
ACCCCGGTCTCCGCCGCCGACTCCTGTCGAGGAGTTGGAAGTGAAAGATG
TGGCGGTCGAAGGGACGGGGGAAGAGGAGTAA
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Synonyms
Publications