NO16G00380, NO16G00380 (gene) Nannochloropsis oceanica

Overview
NameNO16G00380
Unique NameNO16G00380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1421
Alignment locationchr16:143185..144605 +

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Properties
Property NameValue
DescriptionF-box/LRR-repeat protein 15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:143185..144605 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp
Homology
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BLAST of NO16G00380 vs. NCBI_GenBank
Match: PKA47043.1 (F-box protein [Apostasia shenzhenica])

HSP 1 Score: 65.9 bits (159), Expect = 1.400e-7
Identity = 46/148 (31.08%), Postives = 70/148 (47.30%), Query Frame = 0 
Query:    6 IADHCERLTELDLGGLHRVDRDALQALFLTPSAASSLSCVSLARSAASDEVVEALAQTAGTSLRRLDLNSNGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRLSKITLWGCTQVTDVFLKGHRRDRLVVVGRGGS 154
            IAD+C  L+ LD+  L+R++  A+Q L    +  S    + L RSA SDEV+ AL + +G +L  L +N+ G++                                       +RL  + L+GCTQVTDVFL+GH    + ++G  GS
Sbjct:  739 IADNCPHLSCLDIRDLNRLNDFAIQHLV---NGCSPFQRLKLCRSAFSDEVMAALIEASGATLVELVINNLGKVAGNTALAISRRCSLTLRSLDLSFCRKMTDEALGLIVNSCSRLQILKLFGCTQVTDVFLEGHSNSLVKIIGLKGS 883
The following BLAST results are available for this feature:
BLAST of NO16G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
PKA47043.11.400e-731.08F-box protein [Apostasia shenzhenica][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00380.1NO16G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593113gene_5916Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00380.1NO16G00380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00380 ID=NO16G00380|Name=NO16G00380|organism=Nannochloropsis oceanica|type=gene|length=1421bp
ATGgtggatgattccccttccctccctccttccctccctccttccctccc
tccttccctccctcttcccctccctgcctttcactctctcgggcgcgtct
tcgtacaagactcagtccgtccgtccctccctccttccatccctccctct
cttccccagGCCCTCGCTCATATTGCCGACCACTGCGAGCGACTCACCGA
GCTTGACCTTGGAGGGTTGCATCGGGTGGACAGGGACGCGCTGCAGgtga
ggaagggatcgagggagggaaggagagggaaatggaggaagggagcgaag
gagggaggaaatggaggaagggaaggaaggaaggagtgtgcgtcaacata
aggaaagaatctcaggtcgttccctccctccctccctccctccctccctc
ccttcctccttccctccttccctccttcagGCCCTCTTCCTCACCCCGTC
CGCCGCCTCCTCGCTTTCTTGTGTCTCCCTCGCCCGGAGTGCGGCATCAG
ATGAGGTGGTGGAGGCATTGGCACAAACGGCCGGAACGTCACTGCGGCGG
TTGGATTTGAATTCTAACGgtagggagggagggagggaaggagggacggg
ggtaggacaggcaagtcagtcactcacacatggccatagttgccacatta
ttacatctaatgtgtcctcacacggctataattgccacattattacatct
aatgtgtcctcacacggccataattgccacattattacatttaaatttca
atcacagGGCGTCTGACAGACGCCTCTTTGGTGGCGCTCGTCCAGTGCTG
TGGGAGTAGCCTGGAGGAGGTGGATCTGTCCTTCTGCCGCAAGgtgcgcc
ctcactccattttcccctctctctttttctccttcccttattcttcccct
cctttccttctgtccttctttttctcgtttcttcatccttccttcactat
cgtttacatatatccattaatttagtcctccctcactcccgtcctccttc
cccccctcaaaacctctcttccactacccggcccactcacaccctcccct
ccattcccccccctttcctccctcctccccccctccttcattccctcgaa
gCTGACCAACGAGGGCCTGGGCTATCTGGCGGACTCGTGCACACGTTTGT
CGAAAATAACCCTGTGGGGATGCACGCAGgtaggtagggagggagggagg
gagggagggagggaggggagggggtctatgaggagaggccaaaaccttaa
ggatgcggaaagcattgaactccctccctctcttcctccctccctccccc
cctccctccctagGTGACGGACGTTTTCCTGAAGGGTCATCGGCGTGATA
GGCTGGTGGTGGTGGGTCGGGGGGGGAGTGGAAGCCGGATAGCGCTGGAA
GGAGGAGGAGGAGGAAAGTAG
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protein sequence of NO16G00380.1

>NO16G00380.1-protein ID=NO16G00380.1-protein|Name=NO16G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MALAHIADHCERLTELDLGGLHRVDRDALQALFLTPSAASSLSCVSLARS
AASDEVVEALAQTAGTSLRRLDLNSNGRLTDASLVALVQCCGSSLEEVDL
SFCRKLTNEGLGYLADSCTRLSKITLWGCTQVTDVFLKGHRRDRLVVVGR
GGSGSRIALEGGGGGK*
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Synonyms
Publications