NO16G00380.1, NO16G00380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00380.1
Unique NameNO16G00380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length501
Alignment locationchr16:143185..144605 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:143185..144605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00380.1 vs.
Match: PKA47043.1 (F-box protein [Apostasia shenzhenica])

HSP 1 Score: 115.2 bits (287), Expect = 2.000e-22
Identity = 62/148 (41.89%), Postives = 96/148 (64.86%), Query Frame = 0 
Query:    6 IADHCERLTELDLGGLHRVDRDALQALFLTPSAASSLSCVSLARSAASDEVVEALAQTAGTSLRRLDLNSNGRLTDASLVALVQCCGSSLEEVDLSFCRKLTNEGLGYLADSCTRLSKITLWGCTQVTDVFLKGHRRDRLVVVGRGGS 154
            IAD+C  L+ LD+  L+R++  A+Q L    +  S    + L RSA SDEV+ AL + +G +L  L +N+ G++   + +A+ + C  +L  +DLSFCRK+T+E LG + +SC+RL  + L+GCTQVTDVFL+GH    + ++G  GS
Sbjct:  739 IADNCPHLSCLDIRDLNRLNDFAIQHLV---NGCSPFQRLKLCRSAFSDEVMAALIEASGATLVELVINNLGKVAGNTALAISRRCSLTLRSLDLSFCRKMTDEALGLIVNSCSRLQILKLFGCTQVTDVFLEGHSNSLVKIIGLKGS 883
The following BLAST results are available for this feature:
BLAST of NO16G00380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PKA47043.12.000e-2241.89F-box protein [Apostasia shenzhenica][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00380NO16G00380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00380.1NO16G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00380.1.cds1NO16G00380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00380.1.cds2NO16G00380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00380.1.cds3NO16G00380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00380.1.cds4NO16G00380.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00380.1.cds5NO16G00380.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00380.1.cds6NO16G00380.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00380.1 ID=NO16G00380.1|Name=NO16G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=501bp
ATGGCCCTCGCTCATATTGCCGACCACTGCGAGCGACTCACCGAGCTTGA
CCTTGGAGGGTTGCATCGGGTGGACAGGGACGCGCTGCAGGCCCTCTTCC
TCACCCCGTCCGCCGCCTCCTCGCTTTCTTGTGTCTCCCTCGCCCGGAGT
GCGGCATCAGATGAGGTGGTGGAGGCATTGGCACAAACGGCCGGAACGTC
ACTGCGGCGGTTGGATTTGAATTCTAACGGGCGTCTGACAGACGCCTCTT
TGGTGGCGCTCGTCCAGTGCTGTGGGAGTAGCCTGGAGGAGGTGGATCTG
TCCTTCTGCCGCAAGCTGACCAACGAGGGCCTGGGCTATCTGGCGGACTC
GTGCACACGTTTGTCGAAAATAACCCTGTGGGGATGCACGCAGGTGACGG
ACGTTTTCCTGAAGGGTCATCGGCGTGATAGGCTGGTGGTGGTGGGTCGG
GGGGGGAGTGGAAGCCGGATAGCGCTGGAAGGAGGAGGAGGAGGAAAGTA
G
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protein sequence of NO16G00380.1

>NO16G00380.1-protein ID=NO16G00380.1-protein|Name=NO16G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MALAHIADHCERLTELDLGGLHRVDRDALQALFLTPSAASSLSCVSLARS
AASDEVVEALAQTAGTSLRRLDLNSNGRLTDASLVALVQCCGSSLEEVDL
SFCRKLTNEGLGYLADSCTRLSKITLWGCTQVTDVFLKGHRRDRLVVVGR
GGSGSRIALEGGGGGK*
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mRNA from alignment at chr16:143185..144605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00380.1 ID=NO16G00380.1|Name=NO16G00380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1421bp|location=Sequence derived from alignment at chr16:143185..144605+ (Nannochloropsis oceanica)
ATGGTGGATGATTCCCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCC
TCCTTCCCTCCCTCTTCCCCTCCCTGCCTTTCACTCTCTCGGGCGCGTCT
TCGTACAAGACTCAGTCCGTCCGTCCCTCCCTCCTTCCATCCCTCCCTCT
CTTCCCCAGGCCCTCGCTCATATTGCCGACCACTGCGAGCGACTCACCGA
GCTTGACCTTGGAGGGTTGCATCGGGTGGACAGGGACGCGCTGCAGGTGA
GGAAGGGATCGAGGGAGGGAAGGAGAGGGAAATGGAGGAAGGGAGCGAAG
GAGGGAGGAAATGGAGGAAGGGAAGGAAGGAAGGAGTGTGCGTCAACATA
AGGAAAGAATCTCAGGTCGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTTCCTCCTTCCCTCCTTCCCTCCTTCAGGCCCTCTTCCTCACCCCGTC
CGCCGCCTCCTCGCTTTCTTGTGTCTCCCTCGCCCGGAGTGCGGCATCAG
ATGAGGTGGTGGAGGCATTGGCACAAACGGCCGGAACGTCACTGCGGCGG
TTGGATTTGAATTCTAACGGTAGGGAGGGAGGGAGGGAAGGAGGGACGGG
GGTAGGACAGGCAAGTCAGTCACTCACACATGGCCATAGTTGCCACATTA
TTACATCTAATGTGTCCTCACACGGCTATAATTGCCACATTATTACATCT
AATGTGTCCTCACACGGCCATAATTGCCACATTATTACATTTAAATTTCA
ATCACAGGGCGTCTGACAGACGCCTCTTTGGTGGCGCTCGTCCAGTGCTG
TGGGAGTAGCCTGGAGGAGGTGGATCTGTCCTTCTGCCGCAAGGTGCGCC
CTCACTCCATTTTCCCCTCTCTCTTTTTCTCCTTCCCTTATTCTTCCCCT
CCTTTCCTTCTGTCCTTCTTTTTCTCGTTTCTTCATCCTTCCTTCACTAT
CGTTTACATATATCCATTAATTTAGTCCTCCCTCACTCCCGTCCTCCTTC
CCCCCCTCAAAACCTCTCTTCCACTACCCGGCCCACTCACACCCTCCCCT
CCATTCCCCCCCCTTTCCTCCCTCCTCCCCCCCTCCTTCATTCCCTCGAA
GCTGACCAACGAGGGCCTGGGCTATCTGGCGGACTCGTGCACACGTTTGT
CGAAAATAACCCTGTGGGGATGCACGCAGGTAGGTAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGAGGGGGTCTATGAGGAGAGGCCAAAACCTTAA
GGATGCGGAAAGCATTGAACTCCCTCCCTCTCTTCCTCCCTCCCTCCCCC
CCTCCCTCCCTAGGTGACGGACGTTTTCCTGAAGGGTCATCGGCGTGATA
GGCTGGTGGTGGTGGGTCGGGGGGGGAGTGGAAGCCGGATAGCGCTGGAA
GGAGGAGGAGGAGGAAAGTAG
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Coding sequence (CDS) from alignment at chr16:143185..144605+

>NO16G00380.1 ID=NO16G00380.1|Name=NO16G00380.1|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at chr16:143185..144605+ (Nannochloropsis oceanica)
ATGGCCCTCGCTCATATTGCCGACCACTGCGAGCGACTCACCGAGCTTGA
CCTTGGAGGGTTGCATCGGGTGGACAGGGACGCGCTGCAGGCCCTCTTCC
TCACCCCGTCCGCCGCCTCCTCGCTTTCTTGTGTCTCCCTCGCCCGGAGT
GCGGCATCAGATGAGGTGGTGGAGGCATTGGCACAAACGGCCGGAACGTC
ACTGCGGCGGTTGGATTTGAATTCTAACGGGCGTCTGACAGACGCCTCTT
TGGTGGCGCTCGTCCAGTGCTGTGGGAGTAGCCTGGAGGAGGTGGATCTG
TCCTTCTGCCGCAAGCTGACCAACGAGGGCCTGGGCTATCTGGCGGACTC
GTGCACACGTTTGTCGAAAATAACCCTGTGGGGATGCACGCAGGTGACGG
ACGTTTTCCTGAAGGGTCATCGGCGTGATAGGCTGGTGGTGGTGGGTCGG
GGGGGGAGTGGAAGCCGGATAGCGCTGGAAGGAGGAGGAGGAGGAAAGTA
G
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Synonyms
Publications