NO16G00290, NO16G00290 (gene) Nannochloropsis oceanica

Overview
NameNO16G00290
Unique NameNO16G00290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2398
Alignment locationchr16:110764..113161 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:110764..113161 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036426Bulb-type_lectin_dom_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO16G00290 vs. NCBI_GenBank
Match: EWM24093.1 (hypothetical protein Naga_101271g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 260.4 bits (664), Expect = 1.500e-65
Identity = 146/335 (43.58%), Postives = 191/335 (57.01%), Query Frame = 0 
Query:   45 PLTGRKWFLHQLSRCQGIVTLFVWISNLITFLSGYGKFKALRWVDAPFVLWLQRPKSMAHQFVTHGLGKQIWAPMLAVEMLYAWAYTRQHLVLTRALLVPLALYYWGVFNRIASAEQRLRNSKGKVISWEEYLCIYLPFAIKSGFLSASACVNLTAMLTIDYPHTHPYLVGAVAYSSQLGLVVLGMYAILAHDCHITLAWSIWGLKG--QPVPMSIVPYVFRSLPTLLLFVVRAYKSLTGYIKNWATAAAATAAGTPATASKVSHTAGGRAALFLADVEGLENVSGYVDGVARRAGQRLESVEKQVEDAFHATVTRCHYHQISIYTTFWDFCSSP 378
            PLTG KW  H L++ Q  +TL  WI NL+ F+   G FK +RWVDA FVLWLQ PK   HQFVTHGL + IWAP+L +E LY +AY  ++L  +  LL+PL   YW V NR+A AEQRLR SKGK ISWEEY CIYLPFA+KSGF S SA +NL  +L    P    +        + +G+V LG+ A+L H+C  T  + +WGL G    +P ++      SLP   L  +RAY SL  Y++ WA A                H+  G    F    E L+ V    D V+    +RL+ +E  + D+F   VTR HY QI++YT+  D+   P
Sbjct:   38 PLTGSKWIFHHLNQWQAPLTLLTWIINLVIFMPSSGNFKLMRWVDASFVLWLQFPKKRTHQFVTHGL-QNIWAPILLMETLYVYAYAHRYLAYSHLLLLPLGASYWIVHNRLARAEQRLRVSKGKTISWEEYGCIYLPFALKSGFFSVSAFMNLPFLLRKLVPDLPAWARAGAGAVAHIGMVGLGLSAVLEHNCAATFLFVLWGLHGGASRLPGTV------SLPVFFLTFLRAYSSLGAYVRGWALA----------------HSLEGG---FCTGYEWLDKVLACADEVSHVLTERLDWLEAFLADSFQLAVTRVHYFQIALYTSIRDWRPLP 346
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BLAST of NO16G00290 vs. NCBI_GenBank
Match: EWM24095.1 (Bulb-type lectin domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 154.5 bits (389), Expect = 1.100e-33
Identity = 93/183 (50.82%), Postives = 120/183 (65.57%), Query Frame = 0 
Query:  457 LPFYLLIVPFFLLSFLLSASFFTLLFLTPPRSVLPHGEVLQVGERLRYRCSMHLYL--SSPSSSSPTTS--CQDLDLVLGKDGVLSLFRDRRVGEESALVWQSKGGE----EGAYTATVNERSRLVVTSAEGEVVWASPRLVGVGEEGKEGGEEGGGAMFVDGLLGGMYIRDAEGEPTFVTSW 632
            LP +LL +P F  +FLL    F L  L+    +L  G+VL+ G+ LRYRCS   Y    SPSSS+P++S  C DLDLVLGKDGVLSL+RD R+ E+ AL+WQS+GG+       Y ATV+ER+RLVV   EG+VVW+SPRL+  G  GK        A  +DG++GGMY+ D  G+PTF T W
Sbjct:   85 LPLHLLTLPIFFCAFLL--GLFLLSALSSQSIILKEGDVLRPGDSLRYRCSFSDYFPAPSPSSSTPSSSPACHDLDLVLGKDGVLSLYRD-RMREKRALMWQSEGGKXXXXXXXYVATVDERARLVVMREEGDVVWSSPRLLSKG--GKXXXXXXXAAAVLDGVMGGMYVMDGAGQPTFATIW 262
The following BLAST results are available for this feature:
BLAST of NO16G00290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24093.11.500e-6543.58hypothetical protein Naga_101271g2, partial [Nanno... [more]
EWM24095.11.100e-3350.82Bulb-type lectin domain protein, partial [Nannochl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR018ncniR018Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00290.1NO16G00290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593079gene_5905Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101202g1gene6374Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00290.1NO16G00290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00290 ID=NO16G00290|Name=NO16G00290|organism=Nannochloropsis oceanica|type=gene|length=2398bp
TGGCCGTTGGGCGAGACGTTGCAGAGGGTTCCATAACTGCCGCACCTACG
GCCCATCGAGAGCCGCGCGCCCACAAAATCCCACGCATCAGCCAAGCATG
TCCCTTATTTAGATCGGACAAGGGCATGTTCTTGTCCTTTTGTGGTGGGT
GTAAACTTTGATATTTGAGGCACCCGCTTAATCACTGGGTTAAAGAAGAA
GGACGAGGGGCAGGCAGCAGGCAAGCACGAGGAGACGCCCACCAAGGGGG
CGCGGTATCTGTCTCCCTGGTCACAGATGCCCCGACGCACAAGCATTGTG
CAAATCCATCAAGTTATCTCTATTAAAGCAGCTGGAGTAGTCTGTGTGCG
AGACTCTCGCCTAAGCCTGTTTACCTGTCTGAACTATTCTCACCCATACA
TCTAATCACTGCCCACCTCGCTCGCTCATTCTCATCGTCATCCCTCTTCA
TACCAAGCCAAACTCAACAAATTCCCATCTCTCCGCCTACAGCTAGTAAA
TCATGGAGCACATTAGTACCGCGTCACCTCTCTCCTCTTCCTTGCCCCCC
ACGCCCACCACCTCCTCTTCAATGGGCAGCCCCTACCGACGGCGGAGCAG
TGGCAGCAGCCCCATCCGAAGGAGAACGAAGCCCCCCTTGACCGGGAGGA
AATGGTTTCTGCATCAGCTCAGCCGGTGCCAAGGCATTGTCACCTTGTTC
GTGTGGATCAGCAACCTCATCACCTTCCTATCAGGCTACGGTAAATTCAA
GGCTTTGCGGTGGGTGGACGCGCCCTTTGTCCTCTGGCTGCAACGCCCCA
AGAGCATGGCCCATCAGTTCGTCACGCACGGCCTGGGCAAACAAATATGG
GCCCCCATGTTGGCCGTGGAAATGCTGTATGCCTGGGCCTATACACGCCA
ACACCTCGTCCTAACCCGCGCGCTGCTTGTCCCCCTAGCCTTGTACTATT
GGGGTGTCTTCAACCGGATCGCCTCCGCCGAGCAACGCCTCCGCAATTCC
AAGGGAAAAGTCATCTCCTGGGAAGAGTATCTTTGCATCTATCTCCCATT
CGCCATCAAATCTGGCTTCCTCTCCGCCAGCGCCTGCGTCAATCTGACCG
CCATGCTCACGATCGACTACCCCCACACACACCCCTACCTGGTCGGTGCC
GTTGCCTATAGCTCCCAACTCGGCCTCGTCGTCCTCGGTATGTACGCTAT
CCTGGCCCACGACTGCCACATCACCCTCGCTTGGAGCATCTGGGGTCTCA
AAGGCCAGCCAGTTCCCATGTCCATCGTCCCCTATGTGTTCCGTTCCCTC
CCTACCCTCCTCCTCTTCGTTGTCCGCGCCTACAAGTCCCTCACGGGGTA
TATCAAAAACTGGGCGACTGCTGCTGCTGCCACTGCTGCTGGCACTCCTG
CTACGGCTTCCAAAGTCAGCCACACGGCTGGTGGGCGTGCGGCGCTTTTC
CTGGCCGACGTGGAGGGGCTGGAAAATGTCTCGGGCTATGTGGATGGCGT
GGCAAGGCGGGCAGGCCAACGGTTGGAGAGCGTCGAGAAGCAGGTGGAAG
ATGCGTTCCATGCCACAGTCACTCGGTGCCACTATCATCAGATCTCCATC
TACACTACGTTTTGGGATTTCTGCTCGTCCCCTGTCTTCCCTTTCTTCTC
CTCGAAACAGGCCAAGCCCACTCCTGCTGCTGCTCCTGCTGGTGTAGCTG
TGGCTACTGCTGCCCTGCCGGCGAAGGAAGAGATTGTCAATGCTGCCGTG
GCCACGGGCTCAGGAGTTCTGAGCACCATCCCAGAAGGCGAGGAGGAGAA
AGAGACCACCAGCACCAACACTTCCTCCTCCTCATCGGAAAAACCCCGAT
CCTCCCTTCCCTCTCCCTCCCTCCCTTTCTACCTCCTCATTGTGCCATTT
TTCCTCCTTTCCTTCCTTCTGAGCGCCTCCTTCTTCACCCTCCTATTTCT
CACCCCTCCTCGTTCCGTGCTTCCCCACGGTGAAGTCCTCCAAGTCGGAG
AGAGACTCCGCTACCGCTGCAGCATGCACCTCTACCTCTCCTCCCCTTCC
TCGTCCTCCCCCACCACCTCCTGTCAAGATTTGGACCTGGTGCTGGGGAA
GGACGGAGTACTCTCCCTCTTCCGTGACCGGCGAGTGGGCGAGGAGTCAG
CCTTAGTGTGGCAGAGCAAGGGAGGGGAGGAGGGAGCTTATACAGCCACG
GTGAATGAGAGGTCACGACTGGTGGTGACGTCGGCGGAGGGGGAGGTGGT
GTGGGCGTCTCCGCGCTTGGTGGGGGTCGGTGAGGAAGGGAAGGAGGGAG
GGGAGGAGGGAGGGGGGGCGATGTTCGTCGATGGTCTGTTGGGCGGAATG
TATATCAGGGATGCGGAGGGCGAGCCGACGTTTGTGACGTCATGGTAA
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protein sequence of NO16G00290.1

>NO16G00290.1-protein ID=NO16G00290.1-protein|Name=NO16G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MEHISTASPLSSSLPPTPTTSSSMGSPYRRRSSGSSPIRRRTKPPLTGRK
WFLHQLSRCQGIVTLFVWISNLITFLSGYGKFKALRWVDAPFVLWLQRPK
SMAHQFVTHGLGKQIWAPMLAVEMLYAWAYTRQHLVLTRALLVPLALYYW
GVFNRIASAEQRLRNSKGKVISWEEYLCIYLPFAIKSGFLSASACVNLTA
MLTIDYPHTHPYLVGAVAYSSQLGLVVLGMYAILAHDCHITLAWSIWGLK
GQPVPMSIVPYVFRSLPTLLLFVVRAYKSLTGYIKNWATAAAATAAGTPA
TASKVSHTAGGRAALFLADVEGLENVSGYVDGVARRAGQRLESVEKQVED
AFHATVTRCHYHQISIYTTFWDFCSSPVFPFFSSKQAKPTPAAAPAGVAV
ATAALPAKEEIVNAAVATGSGVLSTIPEGEEEKETTSTNTSSSSSEKPRS
SLPSPSLPFYLLIVPFFLLSFLLSASFFTLLFLTPPRSVLPHGEVLQVGE
RLRYRCSMHLYLSSPSSSSPTTSCQDLDLVLGKDGVLSLFRDRRVGEESA
LVWQSKGGEEGAYTATVNERSRLVVTSAEGEVVWASPRLVGVGEEGKEGG
EEGGGAMFVDGLLGGMYIRDAEGEPTFVTSW*
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Synonyms
Publications