NO16G00290.1, NO16G00290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO16G00290.1
Unique Name	NO16G00290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2398
Alignment location	chr16:110764..113161 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr16	genome	chr16:110764..113161 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO16G00290.1 vs.
Match: EWM24093.1 (hypothetical protein Naga_101271g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 286.6 bits (732), Expect = 1.900e-73
Identity = 165/364 (45.33%), Postives = 211/364 (57.97%), Query Frame = 0

Query:   16 PTPTTSSSMGSPYRRRSSGSSPIRRRTKPPLTGRKWFLHQLSRCQGIVTLFVWISNLITFLSGYGKFKALRWVDAPFVLWLQRPKSMAHQFVTHGLGKQIWAPMLAVEMLYAWAYTRQHLVLTRALLVPLALYYWGVFNRIASAEQRLRNSKGKVISWEEYLCIYLPFAIKSGFLSASACVNLTAMLTIDYPHTHPYLVGAVAYSSQLGLVVLGMYAILAHDCHITLAWSIWGLKG--QPVPMSIVPYVFRSLPTLLLFVVRAYKSLTGYIKNWATAAAATAAGTPATASKVSHTAGGRAALFLADVEGLENVSGYVDGVARRAGQRLESVEKQVEDAFHATVTRCHYHQISIYTTFWDFCSSP 378
            P P   SS   PYRRRSSGSSP RRRT+ PLTG KW  H L++ Q  +TL  WI NL+ F+   G FK +RWVDA FVLWLQ PK   HQFVTHGL + IWAP+L +E LY +AY  ++L  +  LL+PL   YW V NR+A AEQRLR SKGK ISWEEY CIYLPFA+KSGF S SA +NL  +L    P    +        + +G+V LG+ A+L H+C  T  + +WGL G    +P ++      SLP   L  +RAY SL  Y++ WA A                H+  G    F    E L+ V    D V+    +RL+ +E  + D+F   VTR HY QI++YT+  D+   P
Sbjct:   12 PMPAVPSS---PYRRRSSGSSPRRRRTQAPLTGSKWIFHHLNQWQAPLTLLTWIINLVIFMPSSGNFKLMRWVDASFVLWLQFPKKRTHQFVTHGL-QNIWAPILLMETLYVYAYAHRYLAYSHLLLLPLGASYWIVHNRLARAEQRLRVSKGKTISWEEYGCIYLPFALKSGFFSVSAFMNLPFLLRKLVPDLPAWARAGAGAVAHIGMVGLGLSAVLEHNCAATFLFVLWGLHGGASRLPGTV------SLPVFFLTFLRAYSSLGAYVRGWALA----------------HSLEGG---FCTGYEWLDKVLACADEVSHVLTERLDWLEAFLADSFQLAVTRVHYFQIALYTSIRDWRPLP 346

The following BLAST results are available for this feature:

BLAST of NO16G00290.1 vs.

BLAST of NO16G00290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM24093.1	1.900e-73	45.33	hypothetical protein Naga_101271g2, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO16G00290	NO16G00290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO16G00290.1	NO16G00290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO16G00290.1.cds1	NO16G00290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:110764..113161-
coding sequence from alignment at chr16:110764..113161-

mRNA sequence

>NO16G00290.1 ID=NO16G00290.1|Name=NO16G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2398bp
TGGCCGTTGGGCGAGACGTTGCAGAGGGTTCCATAACTGCCGCACCTACG
GCCCATCGAGAGCCGCGCGCCCACAAAATCCCACGCATCAGCCAAGCATG
TCCCTTATTTAGATCGGACAAGGGCATGTTCTTGTCCTTTTGTGGTGGGT
GTAAACTTTGATATTTGAGGCACCCGCTTAATCACTGGGTTAAAGAAGAA
GGACGAGGGGCAGGCAGCAGGCAAGCACGAGGAGACGCCCACCAAGGGGG
CGCGGTATCTGTCTCCCTGGTCACAGATGCCCCGACGCACAAGCATTGTG
CAAATCCATCAAGTTATCTCTATTAAAGCAGCTGGAGTAGTCTGTGTGCG
AGACTCTCGCCTAAGCCTGTTTACCTGTCTGAACTATTCTCACCCATACA
TCTAATCACTGCCCACCTCGCTCGCTCATTCTCATCGTCATCCCTCTTCA
TACCAAGCCAAACTCAACAAATTCCCATCTCTCCGCCTACAGCTAGTAAA
TCATGGAGCACATTAGTACCGCGTCACCTCTCTCCTCTTCCTTGCCCCCC
ACGCCCACCACCTCCTCTTCAATGGGCAGCCCCTACCGACGGCGGAGCAG
TGGCAGCAGCCCCATCCGAAGGAGAACGAAGCCCCCCTTGACCGGGAGGA
AATGGTTTCTGCATCAGCTCAGCCGGTGCCAAGGCATTGTCACCTTGTTC
GTGTGGATCAGCAACCTCATCACCTTCCTATCAGGCTACGGTAAATTCAA
GGCTTTGCGGTGGGTGGACGCGCCCTTTGTCCTCTGGCTGCAACGCCCCA
AGAGCATGGCCCATCAGTTCGTCACGCACGGCCTGGGCAAACAAATATGG
GCCCCCATGTTGGCCGTGGAAATGCTGTATGCCTGGGCCTATACACGCCA
ACACCTCGTCCTAACCCGCGCGCTGCTTGTCCCCCTAGCCTTGTACTATT
GGGGTGTCTTCAACCGGATCGCCTCCGCCGAGCAACGCCTCCGCAATTCC
AAGGGAAAAGTCATCTCCTGGGAAGAGTATCTTTGCATCTATCTCCCATT
CGCCATCAAATCTGGCTTCCTCTCCGCCAGCGCCTGCGTCAATCTGACCG
CCATGCTCACGATCGACTACCCCCACACACACCCCTACCTGGTCGGTGCC
GTTGCCTATAGCTCCCAACTCGGCCTCGTCGTCCTCGGTATGTACGCTAT
CCTGGCCCACGACTGCCACATCACCCTCGCTTGGAGCATCTGGGGTCTCA
AAGGCCAGCCAGTTCCCATGTCCATCGTCCCCTATGTGTTCCGTTCCCTC
CCTACCCTCCTCCTCTTCGTTGTCCGCGCCTACAAGTCCCTCACGGGGTA
TATCAAAAACTGGGCGACTGCTGCTGCTGCCACTGCTGCTGGCACTCCTG
CTACGGCTTCCAAAGTCAGCCACACGGCTGGTGGGCGTGCGGCGCTTTTC
CTGGCCGACGTGGAGGGGCTGGAAAATGTCTCGGGCTATGTGGATGGCGT
GGCAAGGCGGGCAGGCCAACGGTTGGAGAGCGTCGAGAAGCAGGTGGAAG
ATGCGTTCCATGCCACAGTCACTCGGTGCCACTATCATCAGATCTCCATC
TACACTACGTTTTGGGATTTCTGCTCGTCCCCTGTCTTCCCTTTCTTCTC
CTCGAAACAGGCCAAGCCCACTCCTGCTGCTGCTCCTGCTGGTGTAGCTG
TGGCTACTGCTGCCCTGCCGGCGAAGGAAGAGATTGTCAATGCTGCCGTG
GCCACGGGCTCAGGAGTTCTGAGCACCATCCCAGAAGGCGAGGAGGAGAA
AGAGACCACCAGCACCAACACTTCCTCCTCCTCATCGGAAAAACCCCGAT
CCTCCCTTCCCTCTCCCTCCCTCCCTTTCTACCTCCTCATTGTGCCATTT
TTCCTCCTTTCCTTCCTTCTGAGCGCCTCCTTCTTCACCCTCCTATTTCT
CACCCCTCCTCGTTCCGTGCTTCCCCACGGTGAAGTCCTCCAAGTCGGAG
AGAGACTCCGCTACCGCTGCAGCATGCACCTCTACCTCTCCTCCCCTTCC
TCGTCCTCCCCCACCACCTCCTGTCAAGATTTGGACCTGGTGCTGGGGAA
GGACGGAGTACTCTCCCTCTTCCGTGACCGGCGAGTGGGCGAGGAGTCAG
CCTTAGTGTGGCAGAGCAAGGGAGGGGAGGAGGGAGCTTATACAGCCACG
GTGAATGAGAGGTCACGACTGGTGGTGACGTCGGCGGAGGGGGAGGTGGT
GTGGGCGTCTCCGCGCTTGGTGGGGGTCGGTGAGGAAGGGAAGGAGGGAG
GGGAGGAGGGAGGGGGGGCGATGTTCGTCGATGGTCTGTTGGGCGGAATG
TATATCAGGGATGCGGAGGGCGAGCCGACGTTTGTGACGTCATGGTAA

protein sequence of NO16G00290.1

>NO16G00290.1-protein ID=NO16G00290.1-protein|Name=NO16G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MEHISTASPLSSSLPPTPTTSSSMGSPYRRRSSGSSPIRRRTKPPLTGRK
WFLHQLSRCQGIVTLFVWISNLITFLSGYGKFKALRWVDAPFVLWLQRPK
SMAHQFVTHGLGKQIWAPMLAVEMLYAWAYTRQHLVLTRALLVPLALYYW
GVFNRIASAEQRLRNSKGKVISWEEYLCIYLPFAIKSGFLSASACVNLTA
MLTIDYPHTHPYLVGAVAYSSQLGLVVLGMYAILAHDCHITLAWSIWGLK
GQPVPMSIVPYVFRSLPTLLLFVVRAYKSLTGYIKNWATAAAATAAGTPA
TASKVSHTAGGRAALFLADVEGLENVSGYVDGVARRAGQRLESVEKQVED
AFHATVTRCHYHQISIYTTFWDFCSSPVFPFFSSKQAKPTPAAAPAGVAV
ATAALPAKEEIVNAAVATGSGVLSTIPEGEEEKETTSTNTSSSSSEKPRS
SLPSPSLPFYLLIVPFFLLSFLLSASFFTLLFLTPPRSVLPHGEVLQVGE
RLRYRCSMHLYLSSPSSSSPTTSCQDLDLVLGKDGVLSLFRDRRVGEESA
LVWQSKGGEEGAYTATVNERSRLVVTSAEGEVVWASPRLVGVGEEGKEGG
EEGGGAMFVDGLLGGMYIRDAEGEPTFVTSW*

mRNA from alignment at chr16:110764..113161-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO16G00290.1 ID=NO16G00290.1|Name=NO16G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2398bp|location=Sequence derived from alignment at chr16:110764..113161- (Nannochloropsis oceanica)
TGGCCGTTGGGCGAGACGTTGCAGAGGGTTCCATAACTGCCGCACCTACG
GCCCATCGAGAGCCGCGCGCCCACAAAATCCCACGCATCAGCCAAGCATG
TCCCTTATTTAGATCGGACAAGGGCATGTTCTTGTCCTTTTGTGGTGGGT
GTAAACTTTGATATTTGAGGCACCCGCTTAATCACTGGGTTAAAGAAGAA
GGACGAGGGGCAGGCAGCAGGCAAGCACGAGGAGACGCCCACCAAGGGGG
CGCGGTATCTGTCTCCCTGGTCACAGATGCCCCGACGCACAAGCATTGTG
CAAATCCATCAAGTTATCTCTATTAAAGCAGCTGGAGTAGTCTGTGTGCG
AGACTCTCGCCTAAGCCTGTTTACCTGTCTGAACTATTCTCACCCATACA
TCTAATCACTGCCCACCTCGCTCGCTCATTCTCATCGTCATCCCTCTTCA
TACCAAGCCAAACTCAACAAATTCCCATCTCTCCGCCTACAGCTAGTAAA
TCATGGAGCACATTAGTACCGCGTCACCTCTCTCCTCTTCCTTGCCCCCC
ACGCCCACCACCTCCTCTTCAATGGGCAGCCCCTACCGACGGCGGAGCAG
TGGCAGCAGCCCCATCCGAAGGAGAACGAAGCCCCCCTTGACCGGGAGGA
AATGGTTTCTGCATCAGCTCAGCCGGTGCCAAGGCATTGTCACCTTGTTC
GTGTGGATCAGCAACCTCATCACCTTCCTATCAGGCTACGGTAAATTCAA
GGCTTTGCGGTGGGTGGACGCGCCCTTTGTCCTCTGGCTGCAACGCCCCA
AGAGCATGGCCCATCAGTTCGTCACGCACGGCCTGGGCAAACAAATATGG
GCCCCCATGTTGGCCGTGGAAATGCTGTATGCCTGGGCCTATACACGCCA
ACACCTCGTCCTAACCCGCGCGCTGCTTGTCCCCCTAGCCTTGTACTATT
GGGGTGTCTTCAACCGGATCGCCTCCGCCGAGCAACGCCTCCGCAATTCC
AAGGGAAAAGTCATCTCCTGGGAAGAGTATCTTTGCATCTATCTCCCATT
CGCCATCAAATCTGGCTTCCTCTCCGCCAGCGCCTGCGTCAATCTGACCG
CCATGCTCACGATCGACTACCCCCACACACACCCCTACCTGGTCGGTGCC
GTTGCCTATAGCTCCCAACTCGGCCTCGTCGTCCTCGGTATGTACGCTAT
CCTGGCCCACGACTGCCACATCACCCTCGCTTGGAGCATCTGGGGTCTCA
AAGGCCAGCCAGTTCCCATGTCCATCGTCCCCTATGTGTTCCGTTCCCTC
CCTACCCTCCTCCTCTTCGTTGTCCGCGCCTACAAGTCCCTCACGGGGTA
TATCAAAAACTGGGCGACTGCTGCTGCTGCCACTGCTGCTGGCACTCCTG
CTACGGCTTCCAAAGTCAGCCACACGGCTGGTGGGCGTGCGGCGCTTTTC
CTGGCCGACGTGGAGGGGCTGGAAAATGTCTCGGGCTATGTGGATGGCGT
GGCAAGGCGGGCAGGCCAACGGTTGGAGAGCGTCGAGAAGCAGGTGGAAG
ATGCGTTCCATGCCACAGTCACTCGGTGCCACTATCATCAGATCTCCATC
TACACTACGTTTTGGGATTTCTGCTCGTCCCCTGTCTTCCCTTTCTTCTC
CTCGAAACAGGCCAAGCCCACTCCTGCTGCTGCTCCTGCTGGTGTAGCTG
TGGCTACTGCTGCCCTGCCGGCGAAGGAAGAGATTGTCAATGCTGCCGTG
GCCACGGGCTCAGGAGTTCTGAGCACCATCCCAGAAGGCGAGGAGGAGAA
AGAGACCACCAGCACCAACACTTCCTCCTCCTCATCGGAAAAACCCCGAT
CCTCCCTTCCCTCTCCCTCCCTCCCTTTCTACCTCCTCATTGTGCCATTT
TTCCTCCTTTCCTTCCTTCTGAGCGCCTCCTTCTTCACCCTCCTATTTCT
CACCCCTCCTCGTTCCGTGCTTCCCCACGGTGAAGTCCTCCAAGTCGGAG
AGAGACTCCGCTACCGCTGCAGCATGCACCTCTACCTCTCCTCCCCTTCC
TCGTCCTCCCCCACCACCTCCTGTCAAGATTTGGACCTGGTGCTGGGGAA
GGACGGAGTACTCTCCCTCTTCCGTGACCGGCGAGTGGGCGAGGAGTCAG
CCTTAGTGTGGCAGAGCAAGGGAGGGGAGGAGGGAGCTTATACAGCCACG
GTGAATGAGAGGTCACGACTGGTGGTGACGTCGGCGGAGGGGGAGGTGGT
GTGGGCGTCTCCGCGCTTGGTGGGGGTCGGTGAGGAAGGGAAGGAGGGAG
GGGAGGAGGGAGGGGGGGCGATGTTCGTCGATGGTCTGTTGGGCGGAATG
TATATCAGGGATGCGGAGGGCGAGCCGACGTTTGTGACGTCATGGTAA

Coding sequence (CDS) from alignment at chr16:110764..113161-

>NO16G00290.1 ID=NO16G00290.1|Name=NO16G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at chr16:110764..113161- (Nannochloropsis oceanica)
ATGGAGCACATTAGTACCGCGTCACCTCTCTCCTCTTCCTTGCCCCCCAC
GCCCACCACCTCCTCTTCAATGGGCAGCCCCTACCGACGGCGGAGCAGTG
GCAGCAGCCCCATCCGAAGGAGAACGAAGCCCCCCTTGACCGGGAGGAAA
TGGTTTCTGCATCAGCTCAGCCGGTGCCAAGGCATTGTCACCTTGTTCGT
GTGGATCAGCAACCTCATCACCTTCCTATCAGGCTACGGTAAATTCAAGG
CTTTGCGGTGGGTGGACGCGCCCTTTGTCCTCTGGCTGCAACGCCCCAAG
AGCATGGCCCATCAGTTCGTCACGCACGGCCTGGGCAAACAAATATGGGC
CCCCATGTTGGCCGTGGAAATGCTGTATGCCTGGGCCTATACACGCCAAC
ACCTCGTCCTAACCCGCGCGCTGCTTGTCCCCCTAGCCTTGTACTATTGG
GGTGTCTTCAACCGGATCGCCTCCGCCGAGCAACGCCTCCGCAATTCCAA
GGGAAAAGTCATCTCCTGGGAAGAGTATCTTTGCATCTATCTCCCATTCG
CCATCAAATCTGGCTTCCTCTCCGCCAGCGCCTGCGTCAATCTGACCGCC
ATGCTCACGATCGACTACCCCCACACACACCCCTACCTGGTCGGTGCCGT
TGCCTATAGCTCCCAACTCGGCCTCGTCGTCCTCGGTATGTACGCTATCC
TGGCCCACGACTGCCACATCACCCTCGCTTGGAGCATCTGGGGTCTCAAA
GGCCAGCCAGTTCCCATGTCCATCGTCCCCTATGTGTTCCGTTCCCTCCC
TACCCTCCTCCTCTTCGTTGTCCGCGCCTACAAGTCCCTCACGGGGTATA
TCAAAAACTGGGCGACTGCTGCTGCTGCCACTGCTGCTGGCACTCCTGCT
ACGGCTTCCAAAGTCAGCCACACGGCTGGTGGGCGTGCGGCGCTTTTCCT
GGCCGACGTGGAGGGGCTGGAAAATGTCTCGGGCTATGTGGATGGCGTGG
CAAGGCGGGCAGGCCAACGGTTGGAGAGCGTCGAGAAGCAGGTGGAAGAT
GCGTTCCATGCCACAGTCACTCGGTGCCACTATCATCAGATCTCCATCTA
CACTACGTTTTGGGATTTCTGCTCGTCCCCTGTCTTCCCTTTCTTCTCCT
CGAAACAGGCCAAGCCCACTCCTGCTGCTGCTCCTGCTGGTGTAGCTGTG
GCTACTGCTGCCCTGCCGGCGAAGGAAGAGATTGTCAATGCTGCCGTGGC
CACGGGCTCAGGAGTTCTGAGCACCATCCCAGAAGGCGAGGAGGAGAAAG
AGACCACCAGCACCAACACTTCCTCCTCCTCATCGGAAAAACCCCGATCC
TCCCTTCCCTCTCCCTCCCTCCCTTTCTACCTCCTCATTGTGCCATTTTT
CCTCCTTTCCTTCCTTCTGAGCGCCTCCTTCTTCACCCTCCTATTTCTCA
CCCCTCCTCGTTCCGTGCTTCCCCACGGTGAAGTCCTCCAAGTCGGAGAG
AGACTCCGCTACCGCTGCAGCATGCACCTCTACCTCTCCTCCCCTTCCTC
GTCCTCCCCCACCACCTCCTGTCAAGATTTGGACCTGGTGCTGGGGAAGG
ACGGAGTACTCTCCCTCTTCCGTGACCGGCGAGTGGGCGAGGAGTCAGCC
TTAGTGTGGCAGAGCAAGGGAGGGGAGGAGGGAGCTTATACAGCCACGGT
GAATGAGAGGTCACGACTGGTGGTGACGTCGGCGGAGGGGGAGGTGGTGT
GGGCGTCTCCGCGCTTGGTGGGGGTCGGTGAGGAAGGGAAGGAGGGAGGG
GAGGAGGGAGGGGGGGCGATGTTCGTCGATGGTCTGTTGGGCGGAATGTA
TATCAGGGATGCGGAGGGCGAGCCGACGTTTGTGACGTCATGGTAA

Synonyms

Publications