NO16G00250, NO16G00250 (gene) Nannochloropsis oceanica

Overview
NameNO16G00250
Unique NameNO16G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1912
Alignment locationchr16:93535..95446 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:93535..95446 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III
Vocabulary: Cellular Component
TermDefinition
GO:0005666RNA polymerase III complex
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4
Homology
The following BLAST results are available for this feature:
BLAST of NO16G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR031ngnoR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00250.1NO16G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00250.1NO16G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00250 ID=NO16G00250|Name=NO16G00250|organism=Nannochloropsis oceanica|type=gene|length=1912bp
ATGCTGGCGATGCTGGCGGTGGTGGTGGAGGAGGCGGAGGATGCGAAGGA
GAAGGGGGAAGGGGAAGGGGGGTGGAGGAGGAGGGGAAGGAGGGGGAAAT
GGAGGGTGGATGGAGGGAAGGGAGGGGATGCCTGTGGAGTTGAAGGAGGG
GGGCAGGAGGTGTATGTAAGAGTCAAGGGAGAGATTGGAGTGGAAGAGCC
GGTGAGGACAAGGAGGAGGACGAGGGGAGGGGGGTTCGGTGAGGAGGAGG
GGATGGATGTGAGTGGTGAGGAAGCGGAGGAGGAAGAGGAGGAGGAAGAG
GAGGAGGAAGGGAAGGAGgtaagtagtctggaagggggcgtacgggggga
aatgaggggcttgttccttccagtatcttcccttgcctcatctctgcggt
cactggcttcccctccctccctccctccctccctccctccctccctcagT
CCGTCCTCCACGCCTCCCCTTGGCCCCCCACCATCACGGATCCTCTAGGT
CCGGTGTCGGTGCACTTTGCCCCTCCCTCCGACGCCGCCCGCGCCGCCTT
CGAGCTCTCTTCAGGACAGGCGTTGGAAGAGGGGGGAAGGGAGGGAGGGA
GGGAGGGCCAGGACAGGGCAGGACACATCCCACCACTGGCGACCCTGGGC
CACCGAGGAGCGGATTTCGTCTTTGTCCAACTGCCGAAGCGATTGCCGAA
CCTCGCAGGCCCCCTTTCAAATGGGGAGGCCCTGCCGTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTGCCCCCCGTCAAAGTGGAAGGAGGTGTGCGC
GGCCCTCCTTCCTCTTCTTCCTCCCTCCCTACCTCGGTTCCTCCCTCCTC
CACCACTGCCCCCTCTCCAGTCACGGAGGGAGGGAGAGAGGGAGGGCAGG
CCAGGGCTGTGAGGGTGAATCCCTTGACGACGATGGGCTCCGGGTATCTT
GGGAAGATCCGGGTGCACAAGAGCGGGCGGATGACATTCCACGCAGgtgg
ggagggagggacggacggaaggacggatagagggagggtgggagggttca
aatagaaaggtgggaaagtatcgtagatgttcttgtttgtggacaagatg
gtttattcctccctccctccctccctccctccctccctccctccctccct
ccctccctccctccctccctcaccctcagGCGACTCGGTGGTGTACGAAG
TACAGCCAGGCTTACCGTGTTATTTCTCGCAGGAGGTGGCCACGCTGTGT
CCTGAGACGCAGAAGCTGGCCGTGTTGGGGACAGTGAAGAAGAAGCTCGT
GTGCTTGCCCGACTTTTCGGCGTCTTTGTTGGGGCGGCGGGAGGGCGCGG
TGGGGGAAGGGGGAGGGGAGGAAAGTGGGTGAGGAGGGGAGGAGAGGGGG
GAGGAGGGGGAGGAGGAGGAAAGAGGAGGGAAAGGAGGGAGGGAAAGAAG
AGTTGGAAGTCACGGAGAATGAGGGAGGGTGCGTGGTGGTAGGAGAGGAG
GATGAGGGAAGGGAAGGGAGGAGAAGAAAGTGGAGAACGAGGAAGAATCA
GCTGCAGCATTTGTAGCAGCAGCAGCAGAAAGAAGAGCGGTAATAGATGG
TGGATGGCGAAGGAGGTTGAGAAGGGATTAGTCATGTACATAGTCAGATA
GGATGAGAGAGGCAGAGACAGATGGGGAGAGCGAGGCGAGAGAGGCAGAG
GAATTAGGCCCCAAACGGACATTATTTATGACAGAGGCGTATCATCACGC
AGGGTAAGACGAGCGTAAAGGAGGGAAATAGATGAATGAAAAATAAAAAC
TAGGCAAGCAATGCAAATGCGAATGCAGCCAAGGGAAATAGAGGGCGAAA
GGGAGAAAGGGAGAGAGGCTCACATCCGGGTAAGAGGGTCAGAACAAAGA
ATGAAGCTCTCG
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protein sequence of NO16G00250.1

>NO16G00250.1-protein ID=NO16G00250.1-protein|Name=NO16G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MLAMLAVVVEEAEDAKEKGEGEGGWRRRGRRGKWRVDGGKGGDACGVEGG
GQEVYVRVKGEIGVEEPVRTRRRTRGGGFGEEEGMDVSGEEAEEEEEEEE
EEEGKESVLHASPWPPTITDPLGPVSVHFAPPSDAARAAFELSSGQALEE
GGREGGREGQDRAGHIPPLATLGHRGADFVFVQLPKRLPNLAGPLSNGEA
LPSSLPPSLPPSLPPVKVEGGVRGPPSSSSSLPTSVPPSSTTAPSPVTEG
GREGGQARAVRVNPLTTMGSGYLGKIRVHKSGRMTFHAGDSVVYEVQPGL
PCYFSQEVATLCPETQKLAVLGTVKKKLVCLPDFSASLLGRREGAVGEGG
GEESG*
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Synonyms
Publications