NO16G00250.1, NO16G00250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00250.1
Unique NameNO16G00250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1598
Alignment locationchr16:93535..95446 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:93535..95446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00250.1 vs.
Match: XP_024190493.1 (uncharacterized protein LOC112194494 [Rosa chinensis])

HSP 1 Score: 65.5 bits (158), Expect = 3.900e-7
Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 0 
Query:  209 LPPSLPPVKVEGGVRGPPSSSSSLPTSVPPSSTTAPSPVTEGGREGGQARAVRVNPLTTMGSGYLGKIRVHKSGRMTFHAGDSVVYEVQPGLPCYFSQEVATLCPETQKLAVLGTVKKKLVCLPDFSASL 339
            LPP+LP VK     +G     SS           APS      R+GG         L  +  GY+GK+ V+KSG + F  GD++ Y+V PG  C FSQ+VA +    +K  VLG + +++V  PD  + L
Sbjct:  162 LPPTLPLVKRPTSAKGKEKVGSS-----------APSEKVGAARKGGS--------LEELSEGYMGKMLVYKSGAVKFKLGDAL-YDVSPGSDCIFSQDVAAINTAARKCCVLGELGQRVVITPDVDSLL 271
The following BLAST results are available for this feature:
BLAST of NO16G00250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024190493.13.900e-735.38uncharacterized protein LOC112194494 [Rosa chinens... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00250NO16G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00250.1NO16G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00250.1.cds1NO16G00250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00250.1.cds2NO16G00250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00250.1.cds3NO16G00250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00250.1 ID=NO16G00250.1|Name=NO16G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp
ATGCTGGCGATGCTGGCGGTGGTGGTGGAGGAGGCGGAGGATGCGAAGGA
GAAGGGGGAAGGGGAAGGGGGGTGGAGGAGGAGGGGAAGGAGGGGGAAAT
GGAGGGTGGATGGAGGGAAGGGAGGGGATGCCTGTGGAGTTGAAGGAGGG
GGGCAGGAGGTGTATGTAAGAGTCAAGGGAGAGATTGGAGTGGAAGAGCC
GGTGAGGACAAGGAGGAGGACGAGGGGAGGGGGGTTCGGTGAGGAGGAGG
GGATGGATGTGAGTGGTGAGGAAGCGGAGGAGGAAGAGGAGGAGGAAGAG
GAGGAGGAAGGGAAGGAGTCCGTCCTCCACGCCTCCCCTTGGCCCCCCAC
CATCACGGATCCTCTAGGTCCGGTGTCGGTGCACTTTGCCCCTCCCTCCG
ACGCCGCCCGCGCCGCCTTCGAGCTCTCTTCAGGACAGGCGTTGGAAGAG
GGGGGAAGGGAGGGAGGGAGGGAGGGCCAGGACAGGGCAGGACACATCCC
ACCACTGGCGACCCTGGGCCACCGAGGAGCGGATTTCGTCTTTGTCCAAC
TGCCGAAGCGATTGCCGAACCTCGCAGGCCCCCTTTCAAATGGGGAGGCC
CTGCCGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCCCCCGTCAA
AGTGGAAGGAGGTGTGCGCGGCCCTCCTTCCTCTTCTTCCTCCCTCCCTA
CCTCGGTTCCTCCCTCCTCCACCACTGCCCCCTCTCCAGTCACGGAGGGA
GGGAGAGAGGGAGGGCAGGCCAGGGCTGTGAGGGTGAATCCCTTGACGAC
GATGGGCTCCGGGTATCTTGGGAAGATCCGGGTGCACAAGAGCGGGCGGA
TGACATTCCACGCAGGCGACTCGGTGGTGTACGAAGTACAGCCAGGCTTA
CCGTGTTATTTCTCGCAGGAGGTGGCCACGCTGTGTCCTGAGACGCAGAA
GCTGGCCGTGTTGGGGACAGTGAAGAAGAAGCTCGTGTGCTTGCCCGACT
TTTCGGCGTCTTTGTTGGGGCGGCGGGAGGGCGCGGTGGGGGAAGGGGGA
GGGGAGGAAAGTGGGTGAGGAGGGGAGGAGAGGGGGGAGGAGGGGGAGGA
GGAGGAAAGAGGAGGGAAAGGAGGGAGGGAAAGAAGAGTTGGAAGTCACG
GAGAATGAGGGAGGGTGCGTGGTGGTAGGAGAGGAGGATGAGGGAAGGGA
AGGGAGGAGAAGAAAGTGGAGAACGAGGAAGAATCAGCTGCAGCATTTGT
AGCAGCAGCAGCAGAAAGAAGAGCGGTAATAGATGGTGGATGGCGAAGGA
GGTTGAGAAGGGATTAGTCATGTACATAGTCAGATAGGATGAGAGAGGCA
GAGACAGATGGGGAGAGCGAGGCGAGAGAGGCAGAGGAATTAGGCCCCAA
ACGGACATTATTTATGACAGAGGCGTATCATCACGCAGGGTAAGACGAGC
GTAAAGGAGGGAAATAGATGAATGAAAAATAAAAACTAGGCAAGCAATGC
AAATGCGAATGCAGCCAAGGGAAATAGAGGGCGAAAGGGAGAAAGGGAGA
GAGGCTCACATCCGGGTAAGAGGGTCAGAACAAAGAATGAAGCTCTCG
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protein sequence of NO16G00250.1

>NO16G00250.1-protein ID=NO16G00250.1-protein|Name=NO16G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MLAMLAVVVEEAEDAKEKGEGEGGWRRRGRRGKWRVDGGKGGDACGVEGG
GQEVYVRVKGEIGVEEPVRTRRRTRGGGFGEEEGMDVSGEEAEEEEEEEE
EEEGKESVLHASPWPPTITDPLGPVSVHFAPPSDAARAAFELSSGQALEE
GGREGGREGQDRAGHIPPLATLGHRGADFVFVQLPKRLPNLAGPLSNGEA
LPSSLPPSLPPSLPPVKVEGGVRGPPSSSSSLPTSVPPSSTTAPSPVTEG
GREGGQARAVRVNPLTTMGSGYLGKIRVHKSGRMTFHAGDSVVYEVQPGL
PCYFSQEVATLCPETQKLAVLGTVKKKLVCLPDFSASLLGRREGAVGEGG
GEESG*
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mRNA from alignment at chr16:93535..95446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00250.1 ID=NO16G00250.1|Name=NO16G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at chr16:93535..95446- (Nannochloropsis oceanica)
ATGCTGGCGATGCTGGCGGTGGTGGTGGAGGAGGCGGAGGATGCGAAGGA
GAAGGGGGAAGGGGAAGGGGGGTGGAGGAGGAGGGGAAGGAGGGGGAAAT
GGAGGGTGGATGGAGGGAAGGGAGGGGATGCCTGTGGAGTTGAAGGAGGG
GGGCAGGAGGTGTATGTAAGAGTCAAGGGAGAGATTGGAGTGGAAGAGCC
GGTGAGGACAAGGAGGAGGACGAGGGGAGGGGGGTTCGGTGAGGAGGAGG
GGATGGATGTGAGTGGTGAGGAAGCGGAGGAGGAAGAGGAGGAGGAAGAG
GAGGAGGAAGGGAAGGAGGTAAGTAGTCTGGAAGGGGGCGTACGGGGGGA
AATGAGGGGCTTGTTCCTTCCAGTATCTTCCCTTGCCTCATCTCTGCGGT
CACTGGCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGT
CCGTCCTCCACGCCTCCCCTTGGCCCCCCACCATCACGGATCCTCTAGGT
CCGGTGTCGGTGCACTTTGCCCCTCCCTCCGACGCCGCCCGCGCCGCCTT
CGAGCTCTCTTCAGGACAGGCGTTGGAAGAGGGGGGAAGGGAGGGAGGGA
GGGAGGGCCAGGACAGGGCAGGACACATCCCACCACTGGCGACCCTGGGC
CACCGAGGAGCGGATTTCGTCTTTGTCCAACTGCCGAAGCGATTGCCGAA
CCTCGCAGGCCCCCTTTCAAATGGGGAGGCCCTGCCGTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTGCCCCCCGTCAAAGTGGAAGGAGGTGTGCGC
GGCCCTCCTTCCTCTTCTTCCTCCCTCCCTACCTCGGTTCCTCCCTCCTC
CACCACTGCCCCCTCTCCAGTCACGGAGGGAGGGAGAGAGGGAGGGCAGG
CCAGGGCTGTGAGGGTGAATCCCTTGACGACGATGGGCTCCGGGTATCTT
GGGAAGATCCGGGTGCACAAGAGCGGGCGGATGACATTCCACGCAGGTGG
GGAGGGAGGGACGGACGGAAGGACGGATAGAGGGAGGGTGGGAGGGTTCA
AATAGAAAGGTGGGAAAGTATCGTAGATGTTCTTGTTTGTGGACAAGATG
GTTTATTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCACCCTCAGGCGACTCGGTGGTGTACGAAG
TACAGCCAGGCTTACCGTGTTATTTCTCGCAGGAGGTGGCCACGCTGTGT
CCTGAGACGCAGAAGCTGGCCGTGTTGGGGACAGTGAAGAAGAAGCTCGT
GTGCTTGCCCGACTTTTCGGCGTCTTTGTTGGGGCGGCGGGAGGGCGCGG
TGGGGGAAGGGGGAGGGGAGGAAAGTGGGTGAGGAGGGGAGGAGAGGGGG
GAGGAGGGGGAGGAGGAGGAAAGAGGAGGGAAAGGAGGGAGGGAAAGAAG
AGTTGGAAGTCACGGAGAATGAGGGAGGGTGCGTGGTGGTAGGAGAGGAG
GATGAGGGAAGGGAAGGGAGGAGAAGAAAGTGGAGAACGAGGAAGAATCA
GCTGCAGCATTTGTAGCAGCAGCAGCAGAAAGAAGAGCGGTAATAGATGG
TGGATGGCGAAGGAGGTTGAGAAGGGATTAGTCATGTACATAGTCAGATA
GGATGAGAGAGGCAGAGACAGATGGGGAGAGCGAGGCGAGAGAGGCAGAG
GAATTAGGCCCCAAACGGACATTATTTATGACAGAGGCGTATCATCACGC
AGGGTAAGACGAGCGTAAAGGAGGGAAATAGATGAATGAAAAATAAAAAC
TAGGCAAGCAATGCAAATGCGAATGCAGCCAAGGGAAATAGAGGGCGAAA
GGGAGAAAGGGAGAGAGGCTCACATCCGGGTAAGAGGGTCAGAACAAAGA
ATGAAGCTCTCG
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Coding sequence (CDS) from alignment at chr16:93535..95446-

>NO16G00250.1 ID=NO16G00250.1|Name=NO16G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr16:93535..95446- (Nannochloropsis oceanica)
ATGCTGGCGATGCTGGCGGTGGTGGTGGAGGAGGCGGAGGATGCGAAGGA
GAAGGGGGAAGGGGAAGGGGGGTGGAGGAGGAGGGGAAGGAGGGGGAAAT
GGAGGGTGGATGGAGGGAAGGGAGGGGATGCCTGTGGAGTTGAAGGAGGG
GGGCAGGAGGTGTATGTAAGAGTCAAGGGAGAGATTGGAGTGGAAGAGCC
GGTGAGGACAAGGAGGAGGACGAGGGGAGGGGGGTTCGGTGAGGAGGAGG
GGATGGATGTGAGTGGTGAGGAAGCGGAGGAGGAAGAGGAGGAGGAAGAG
GAGGAGGAAGGGAAGGAGTCCGTCCTCCACGCCTCCCCTTGGCCCCCCAC
CATCACGGATCCTCTAGGTCCGGTGTCGGTGCACTTTGCCCCTCCCTCCG
ACGCCGCCCGCGCCGCCTTCGAGCTCTCTTCAGGACAGGCGTTGGAAGAG
GGGGGAAGGGAGGGAGGGAGGGAGGGCCAGGACAGGGCAGGACACATCCC
ACCACTGGCGACCCTGGGCCACCGAGGAGCGGATTTCGTCTTTGTCCAAC
TGCCGAAGCGATTGCCGAACCTCGCAGGCCCCCTTTCAAATGGGGAGGCC
CTGCCGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCCCCCGTCAA
AGTGGAAGGAGGTGTGCGCGGCCCTCCTTCCTCTTCTTCCTCCCTCCCTA
CCTCGGTTCCTCCCTCCTCCACCACTGCCCCCTCTCCAGTCACGGAGGGA
GGGAGAGAGGGAGGGCAGGCCAGGGCTGTGAGGGTGAATCCCTTGACGAC
GATGGGCTCCGGGTATCTTGGGAAGATCCGGGTGCACAAGAGCGGGCGGA
TGACATTCCACGCAGGCGACTCGGTGGTGTACGAAGTACAGCCAGGCTTA
CCGTGTTATTTCTCGCAGGAGGTGGCCACGCTGTGTCCTGAGACGCAGAA
GCTGGCCGTGTTGGGGACAGTGAAGAAGAAGCTCGTGTGCTTGCCCGACT
TTTCGGCGTCTTTGTTGGGGCGGCGGGAGGGCGCGGTGGGGGAAGGGGGA
GGGGAGGAAAGTGGGTGA
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Synonyms
Publications