NO16G00190, NO16G00190 (gene) Nannochloropsis oceanica

Overview
NameNO16G00190
Unique NameNO16G00190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2084
Alignment locationchr16:71616..73699 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:71616..73699 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO16G00190 vs. NCBI_GenBank
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 354.0 bits (907), Expect = 8.800e-94
Identity = 237/566 (41.87%), Postives = 322/566 (56.89%), Query Frame = 0
Query:    8 MPSPPSLVPTAVELLRLAHGTLLRPQQQEQGQPQAEAVAALRAHLAEDDTASMKTDLKALTRLLGQATMD-GEXXXXXXXXXXXXXXXXXXXXRLATAFSETLNLTGGRRKLSMSLTFSSLQPSAKDDKQVHASAMHGAGVVSPFMSPSYWASPSNPLTTPSLLNEIFDYVGLIA---SPPSISLSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMAAVVAARTNLGHLACVCRLWKVTASEDRYWRPLSTAFLPMLGTAPTTTHMPPATSTPSSPSQLQSQSPCRDALVQYGKCLAMPTVRDGDDWQAHLLLSFEILDERDSLRLFSASGPVDLILSSESGLTALRLTGTKRTEVCCPFSAASRDPEKRRFKNIKDFFANGSQPQFPAALRVRVMGKDTRTGKQALLYTSHPGTQRSVKVSTLQYWQQFLAADSLFVWEPWSRWSTGDVTQTNEVVEISASFYVSPVKIVSHDDRMGEDVAGGMDDAAEAVQDGDPDPPQNASALSRERAREQLHVIMGGDEGAYSSHNSFVALQFRTLDASIPARFIKAALAAADST 570
            M +P SLV TA  LLRL+  TLL   Q +    Q +  AALR++  ++       D+ +   ++ +A  + G+             XXXXXX  L   FS+  + T   ++ S++    S  P  KD +   A  +HGAG +    S    + P++PL TPSLL EIF ++G +A   + P ++ S                                   +  A+ A R NL  L  V RLW+ TAS+DR+WRP+ +  LP L             +  +  ++     P R A ++Y +CLA+P V DG++W AH+LLSFEI D +DS+RLF ASGP+++I S+ESGLTALRLTGTKR+EVC PFSA SRDP  +RF+NI  +  +  +P FP  LRVRV+  D RTG QAL+Y S P T+RSVK STL +W++FL   SLFVWE WSRW   + TQ  E VEIS SFYVSPV       +     +     +AE  +DG    P +A+  SR+RA +Q HVIMGGDE AY++HNSFVA+QFRTLDAS+PAR+IK AL  + +T
Sbjct:   72 MEAPLSLVHTAFALLRLSRETLL---QNQPDNAQEDVKAALRSYFTKNVAHREIADISSYIDVVQKALAESGDGIMDNNEDHATVTXXXXXXANLLVDFSD--SSTSATQQKSITPFCKSPPPKLKDHRD--AYGVHGAGKI---RSTPLHSFPTDPLATPSLLTEIFSFLGTVAPYGAEPVLNGS-----------------------GHPCRMSAGPGSETTALQAVRVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTL-------------TMDAKETRTTKPFPYRQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQ--EAVEISTSFYVSPV-------QKSPVSSASSTGSAEEREDGWMHFP-SATGTSRQRALDQPHVIMGGDETAYANHNSFVAVQFRTLDASVPARYIKGALERSRAT 581          
BLAST of NO16G00190 vs. NCBI_GenBank
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526] >EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 1.200e-26
Identity = 91/275 (33.09%), Postives = 134/275 (48.73%), Query Frame = 0
Query:  233 RTNLGHLACVCRLWKVTASEDRYWRPLSTAFLPMLGTAPTTTHMPPATSTP----------------SSPSQLQSQSP------CRDALVQYGKCLAMPTVRDGDDWQAHLLLSFEILDERDSLRLFSASGPVDLILSSESGLTALRLTGTKRTEVCCPFSAASRDPEKRRFKNIKDFFANGSQPQFPAALRVRVMGKDTRTGKQALLYTSHPGTQRSVKVSTLQYWQQFLAAD------SLFVWEPWSRWSTGDVTQTNEVVEISASFYVSPVK 480
            R  LG LA VCR W+  A  DR+W+P+     P L  A          S P                +  S   S SP       R  L+Q+G+CL    +R G  W   + LSF++ DE+D  RLFS++GP+    ++  G+TA++LTG +R  V  PFSAASRD       +I++ F  G    +P +  +RV  +D RTGK ALL++S   T+R         W + L  D      +L V + WSR +   +  T+  +++   FYV+PV+
Sbjct:  258 RKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGASGPDPDAAALTEAAVDGAGAGASSEPSTSPGGRAGWHRKYLIQFGRCLFDRPIRQG-PWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTG-RRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKR---------WVEPLGEDMGVPQGTLLVNQGWSRVT---IPSTDLAMQMLTVFYVAPVE 518          
BLAST of NO16G00190 vs. NCBI_GenBank
Match: EWM22694.1 (hypothetical protein Naga_100340g3 [Nannochloropsis gaditana])

HSP 1 Score: 123.6 bits (309), Expect = 1.900e-24
Identity = 88/253 (34.78%), Postives = 129/253 (50.99%), Query Frame = 0
Query:  232 ARTNLGHLACVCRLWKVTASEDRYWRPLSTAFLPMLGTAPTTTHMP-----PATSTPSSPSQLQSQSPCRDALVQYGKCLAMPTVRDGDDWQAHLLLSFEILDERDSLRLFSASGPVDLILSSESGLTALRLTGTKRTEVCCP-FSAASRDPEKRRFKNIKDFFANGSQPQFPAALRVRVMGKDTRTGKQALLYTSHPGTQRSVKVSTLQYWQQFLAADSLFVW-EPWSRWSTGDVTQTNEVVEISASFYVSP 478
            AR  L  L+ V R +   A  + YWRP++   LP+L  A    H P        +  +     +     R  L++YG CL       G+  +    LSFE+ D  D LR+ SASGP+ + +  + G T+LR+ GT R EV  P FSAASRDP +RRF +++D+F  G  P+F AAL VRV   D RTG+ ALL+++        + + L YW+ FL   S+  + + WS           E + ++  F+V P
Sbjct:  194 ARAVLTTLSLVNRRFHALACWEEYWRPVAEGLLPVL--AVPRRHSPRRQXXXXXARGAGEGGGRRGEDFRGYLLKYGHCLLHRRAWMGEALEDGFSLSFEVWDAMDGLRMLSASGPIRVQMDQQGGFTSLRMGGTHRREVPGPAFSAASRDPLRRRFASMEDYFGRGHLPEFGAALSVRVTVTDERTGRMALLWSTRKDAAYLTE-APLAYWEPFLPEGSISCFLDHWSPLMC--PAYDGESMTVTIGFHVCP 441          
The following BLAST results are available for this feature:
BLAST of NO16G00190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22815.18.800e-9441.87hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
XP_005853741.11.200e-2633.09hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
EWM22694.11.900e-2434.78hypothetical protein Naga_100340g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR089ncniR089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00190.1NO16G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00190.1NO16G00190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00190 ID=NO16G00190|Name=NO16G00190|organism=Nannochloropsis oceanica|type=gene|length=2084bp
AGGGCTACTACTTTCTTTTTCTTCCGTTGATTTTAGACTTGACTTGAGCC
GTTGGAACAATCCTTCTTTCCGTCTGCCCACTCGACAATGCCATTCCCGT
AACAACACATTTGTGCTTGCCAAGTACTCATGTACCACAGTAGTATGAGC
CTCTTTTCATCAGCGTTTCAATCATCTGCTGGCGTCGTGGTTGATTGTCT
ATTACCCTCACGCTTCTCGCATCGGGGGATATCAACGCCACCCACGCACG
ATCACTCGCTGCATTCCATCTCACGCCCTCAATTCATCATATATGCAGCA
CACAGTAGGTACGATGCCCAGCCCTCCGTCTCTCGTGCCCACGGCTGTGG
AGTTGCTACGCTTGGCTCATGGGACGCTTCTTCGGCCGCAGCAGCAAGAA
CAAGGACAGCCACAAGCAGAGGCCGTGGCGGCCTTGCGTGCCCACCTTGC
CGAGGACGACACCGCGAGCATGAAGACAGACCTAAAAGCATTGACACGAT
TGCTAGGTCAAGCTACGATGGACGGGGAAGAAGAGTCTGAGGAGGACAAT
GCGACGACAACCGCCACCACTTCCACGTCCGCCGCGATGCGGTTAGCCAC
CGCGTTCTCAGAAACGCTAAACTTGACGGGTGGAAGGAGGAAGCTATCAA
TGTCTCTTACGTTTTCATCTCTACAGCCTTCTGCCAAGGACGATAAGCAA
GTGCATGCCTCCGCCATGCATGGCGCGGGCGTTGTCAGCCCGTTCATGTC
TCCTAGCTACTGGGCCTCGCCCTCCAACCCCTTGACGACGCCGTCCTTGC
TCAACGAGATTTTTGATTACGTGGGCTTGATAGCCTCACCTCCTTCCATT
TCTCTGTCCATATCCCCTGCGAACTCTATTTCTTTGTCTTCTTTCCACTC
TTCTTCTTCCTCTTCTTCAGCAGCAGCAACAGCTGTACCAGCAGCAGCCG
CAGGAATGACGCCCGATATGGCCGCTGTTGTGGCTGCCCGCACAAATCTT
GGGCACCTAGCATGTGTCTGCCGCCTTTGGAAAGTAACTGCATCGGAGGA
CCGGTACTGGCGGCCACTCTCCACGGCATTTCTGCCCATGTTGGGGACGG
CCCCCACAACCACCCACATGCCGCCGGCTACCAGCACCCCTTCCTCCCCT
TCCCAGCTACAATCGCAATCGCCCTGTCGCGACGCCTTAGTTCAATATGG
TAAATGCCTGGCCATGCCTACCGTGCGCGATGGAGACGACTGGCAGGCCC
ACTTGCTCCTATCTTTCGAGATCCTGGACGAGCGAGACTCCCTACGTTTA
TTTTCGGCTTCGGGGCCCGTGGACCTTATTCTATCCTCCGAATCGGGCTT
GACAGCTCTGCGCCTTACTGGTACCAAGCGCACTGAGGTGTGTTGTCCCT
TCTCGGCTGCCTCGCGAGACCCTGAGAAGCGCCGCTTCAAGAACATCAAG
GACTTTTTCGCCAATGGCTCCCAGCCTCAGTTCCCCGCGGCGTTGCGTGT
GAGGGTAATGGGCAAAGACACACGCACGGGGAAGCAAGCCTTACTTTACA
CCTCGCATCCAGGCACACAACGCTCTGTGAAAGTTTCGACTTTGCAGTAT
TGGCAACAATTTTTGGCGGCAGATAGCTTATTTGTGTGGGAGCCTTGGTC
ACGGTGGAGCACCGGGGATGTGACGCAAACCAATGAGGTGGTGGAAATTA
GCGCATCTTTCTACGTTTCACCGGTGAAAATCGTGAGTCATGATGATAGG
ATGGGAGAGGATGTAGCTGGAGGGATGGATGACGCAGCGGAGGCTGTACA
GGACGGGGATCCTGATCCTCCACAAAACGCAAGTGCACTGTCCAGGGAGC
GCGCGCGTGAGCAATTGCATGTGATTATGGGTGGAGATGAGGGTGCGTAC
TCGTCACACAATTCATTTGTAGCCTTGCAATTCCGTACACTGGACGCTTC
TATCCCTGCGCGGTTTATTAAGGCGGCTTTGGCTGCGGCAGATTCCACGA
CTCCATGAGAGGAAAGCAAACCAGGCAGTGACAACATACATAATTGTGCA
TTTTGAAAGAAATAATTATATTGAAAGCTGAAGG
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protein sequence of NO16G00190.1

>NO16G00190.1-protein ID=NO16G00190.1-protein|Name=NO16G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MQHTVGTMPSPPSLVPTAVELLRLAHGTLLRPQQQEQGQPQAEAVAALRA
HLAEDDTASMKTDLKALTRLLGQATMDGEEESEEDNATTTATTSTSAAMR
LATAFSETLNLTGGRRKLSMSLTFSSLQPSAKDDKQVHASAMHGAGVVSP
FMSPSYWASPSNPLTTPSLLNEIFDYVGLIASPPSISLSISPANSISLSS
FHSSSSSSSAAATAVPAAAAGMTPDMAAVVAARTNLGHLACVCRLWKVTA
SEDRYWRPLSTAFLPMLGTAPTTTHMPPATSTPSSPSQLQSQSPCRDALV
QYGKCLAMPTVRDGDDWQAHLLLSFEILDERDSLRLFSASGPVDLILSSE
SGLTALRLTGTKRTEVCCPFSAASRDPEKRRFKNIKDFFANGSQPQFPAA
LRVRVMGKDTRTGKQALLYTSHPGTQRSVKVSTLQYWQQFLAADSLFVWE
PWSRWSTGDVTQTNEVVEISASFYVSPVKIVSHDDRMGEDVAGGMDDAAE
AVQDGDPDPPQNASALSRERAREQLHVIMGGDEGAYSSHNSFVALQFRTL
DASIPARFIKAALAAADSTTP*
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Synonyms
Publications