NO16G00190.1, NO16G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00190.1
Unique NameNO16G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2084
Alignment locationchr16:71616..73699 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:71616..73699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO16G00190.1 vs.
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 368.2 bits (944), Expect = 4.500e-98
Identity = 252/568 (44.37%), Postives = 336/568 (59.15%), Query Frame = 0 
Query:    8 MPSPPSLVPTAVELLRLAHGTLLRPQQQEQGQPQAEAVAALRAH----LAEDDTASMKTDLKALTRLLGQATMDGEEESEEDNATTTATTSTSAAMRLATAFSETLNLTGGRRKLSMSLTFSSLQPSAKDDKQVHASAMHGAGVVSPFMSPSYWASPSNPLTTPSLLNEIFDYVGLIASPPSISLSISPANSISLSSFHSSSSSSSAAATAVPAAAAGMTPDMAAVVAARTNLGHLACVCRLWKVTASEDRYWRPLSTAFLPMLGTAPTTTHMPPATSTPSSPSQLQSQSPCRDALVQYGKCLAMPTVRDGDDWQAHLLLSFEILDERDSLRLFSASGPVDLILSSESGLTALRLTGTKRTEVCCPFSAASRDPEKRRFKNIKDFFANGSQPQFPAALRVRVMGKDTRTGKQALLYTSHPGTQRSVKVSTLQYWQQFLAADSLFVWEPWSRWSTGDVTQTNEVVEISASFYVSPVKI--VSHDDRMGEDVAGGMDDAAEAVQDGDPDPPQNASALSRERAREQLHVIMGGDEGAYSSHNSFVALQFRTLDASIPARFIKAALAAADST 570
            M +P SLV TA  LLRL+  TLL   Q +    Q +  AALR++    +A  + A + + +  + + L ++  DG  ++ ED+AT T TT+TSA   L   FS++   T   ++ S++    S  P  KD +  +   +HGAG +      S+   P++PL TPSLL EIF ++G +A           A  +   S H    S            AG   +  A+ A R NL  L  V RLW+ TAS+DR+WRP+ +  LP L      T     T+ P          P R A ++Y +CLA+P V DG++W AH+LLSFEI D +DS+RLF ASGP+++I S+ESGLTALRLTGTKR+EVC PFSA SRDP  +RF+NI  +  +  +P FP  LRVRV+  D RTG QAL+Y S P T+RSVK STL +W++FL   SLFVWE WSRW   + TQ  E VEIS SFYVSPV+   VS     G         +AE  +DG    P +A+  SR+RA +Q HVIMGGDE AY++HNSFVA+QFRTLDAS+PAR+IK AL  + +T
Sbjct:   72 MEAPLSLVHTAFALLRLSRETLL---QNQPDNAQEDVKAALRSYFTKNVAHREIADISSYIDVVQKALAESG-DGIMDNNEDHATVTVTTTTSA--NLLVDFSDSS--TSATQQKSITPFCKSPPPKLKDHRDAYG--VHGAGKIRSTPLHSF---PTDPLATPSLLTEIFSFLGTVAP--------YGAEPVLNGSGHPCRMS------------AGPGSETTALQAVRVNLAPLLTVARLWRATASQDRFWRPIVSWTLPTLTMDAKETR----TTKPF---------PYRQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFENISAYLCHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQ--EAVEISTSFYVSPVQKSPVSSASSTG---------SAEEREDGWMHFP-SATGTSRQRALDQPHVIMGGDETAYANHNSFVAVQFRTLDASVPARYIKGALERSRAT 581
The following BLAST results are available for this feature:
BLAST of NO16G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22815.14.500e-9844.37hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00190NO16G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00190.1NO16G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00190.1.cds1NO16G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00190.1 ID=NO16G00190.1|Name=NO16G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp
AGGGCTACTACTTTCTTTTTCTTCCGTTGATTTTAGACTTGACTTGAGCC
GTTGGAACAATCCTTCTTTCCGTCTGCCCACTCGACAATGCCATTCCCGT
AACAACACATTTGTGCTTGCCAAGTACTCATGTACCACAGTAGTATGAGC
CTCTTTTCATCAGCGTTTCAATCATCTGCTGGCGTCGTGGTTGATTGTCT
ATTACCCTCACGCTTCTCGCATCGGGGGATATCAACGCCACCCACGCACG
ATCACTCGCTGCATTCCATCTCACGCCCTCAATTCATCATATATGCAGCA
CACAGTAGGTACGATGCCCAGCCCTCCGTCTCTCGTGCCCACGGCTGTGG
AGTTGCTACGCTTGGCTCATGGGACGCTTCTTCGGCCGCAGCAGCAAGAA
CAAGGACAGCCACAAGCAGAGGCCGTGGCGGCCTTGCGTGCCCACCTTGC
CGAGGACGACACCGCGAGCATGAAGACAGACCTAAAAGCATTGACACGAT
TGCTAGGTCAAGCTACGATGGACGGGGAAGAAGAGTCTGAGGAGGACAAT
GCGACGACAACCGCCACCACTTCCACGTCCGCCGCGATGCGGTTAGCCAC
CGCGTTCTCAGAAACGCTAAACTTGACGGGTGGAAGGAGGAAGCTATCAA
TGTCTCTTACGTTTTCATCTCTACAGCCTTCTGCCAAGGACGATAAGCAA
GTGCATGCCTCCGCCATGCATGGCGCGGGCGTTGTCAGCCCGTTCATGTC
TCCTAGCTACTGGGCCTCGCCCTCCAACCCCTTGACGACGCCGTCCTTGC
TCAACGAGATTTTTGATTACGTGGGCTTGATAGCCTCACCTCCTTCCATT
TCTCTGTCCATATCCCCTGCGAACTCTATTTCTTTGTCTTCTTTCCACTC
TTCTTCTTCCTCTTCTTCAGCAGCAGCAACAGCTGTACCAGCAGCAGCCG
CAGGAATGACGCCCGATATGGCCGCTGTTGTGGCTGCCCGCACAAATCTT
GGGCACCTAGCATGTGTCTGCCGCCTTTGGAAAGTAACTGCATCGGAGGA
CCGGTACTGGCGGCCACTCTCCACGGCATTTCTGCCCATGTTGGGGACGG
CCCCCACAACCACCCACATGCCGCCGGCTACCAGCACCCCTTCCTCCCCT
TCCCAGCTACAATCGCAATCGCCCTGTCGCGACGCCTTAGTTCAATATGG
TAAATGCCTGGCCATGCCTACCGTGCGCGATGGAGACGACTGGCAGGCCC
ACTTGCTCCTATCTTTCGAGATCCTGGACGAGCGAGACTCCCTACGTTTA
TTTTCGGCTTCGGGGCCCGTGGACCTTATTCTATCCTCCGAATCGGGCTT
GACAGCTCTGCGCCTTACTGGTACCAAGCGCACTGAGGTGTGTTGTCCCT
TCTCGGCTGCCTCGCGAGACCCTGAGAAGCGCCGCTTCAAGAACATCAAG
GACTTTTTCGCCAATGGCTCCCAGCCTCAGTTCCCCGCGGCGTTGCGTGT
GAGGGTAATGGGCAAAGACACACGCACGGGGAAGCAAGCCTTACTTTACA
CCTCGCATCCAGGCACACAACGCTCTGTGAAAGTTTCGACTTTGCAGTAT
TGGCAACAATTTTTGGCGGCAGATAGCTTATTTGTGTGGGAGCCTTGGTC
ACGGTGGAGCACCGGGGATGTGACGCAAACCAATGAGGTGGTGGAAATTA
GCGCATCTTTCTACGTTTCACCGGTGAAAATCGTGAGTCATGATGATAGG
ATGGGAGAGGATGTAGCTGGAGGGATGGATGACGCAGCGGAGGCTGTACA
GGACGGGGATCCTGATCCTCCACAAAACGCAAGTGCACTGTCCAGGGAGC
GCGCGCGTGAGCAATTGCATGTGATTATGGGTGGAGATGAGGGTGCGTAC
TCGTCACACAATTCATTTGTAGCCTTGCAATTCCGTACACTGGACGCTTC
TATCCCTGCGCGGTTTATTAAGGCGGCTTTGGCTGCGGCAGATTCCACGA
CTCCATGAGAGGAAAGCAAACCAGGCAGTGACAACATACATAATTGTGCA
TTTTGAAAGAAATAATTATATTGAAAGCTGAAGG
back to top

protein sequence of NO16G00190.1

>NO16G00190.1-protein ID=NO16G00190.1-protein|Name=NO16G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MQHTVGTMPSPPSLVPTAVELLRLAHGTLLRPQQQEQGQPQAEAVAALRA
HLAEDDTASMKTDLKALTRLLGQATMDGEEESEEDNATTTATTSTSAAMR
LATAFSETLNLTGGRRKLSMSLTFSSLQPSAKDDKQVHASAMHGAGVVSP
FMSPSYWASPSNPLTTPSLLNEIFDYVGLIASPPSISLSISPANSISLSS
FHSSSSSSSAAATAVPAAAAGMTPDMAAVVAARTNLGHLACVCRLWKVTA
SEDRYWRPLSTAFLPMLGTAPTTTHMPPATSTPSSPSQLQSQSPCRDALV
QYGKCLAMPTVRDGDDWQAHLLLSFEILDERDSLRLFSASGPVDLILSSE
SGLTALRLTGTKRTEVCCPFSAASRDPEKRRFKNIKDFFANGSQPQFPAA
LRVRVMGKDTRTGKQALLYTSHPGTQRSVKVSTLQYWQQFLAADSLFVWE
PWSRWSTGDVTQTNEVVEISASFYVSPVKIVSHDDRMGEDVAGGMDDAAE
AVQDGDPDPPQNASALSRERAREQLHVIMGGDEGAYSSHNSFVALQFRTL
DASIPARFIKAALAAADSTTP*
back to top

mRNA from alignment at chr16:71616..73699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00190.1 ID=NO16G00190.1|Name=NO16G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp|location=Sequence derived from alignment at chr16:71616..73699- (Nannochloropsis oceanica)
AGGGCTACTACTTTCTTTTTCTTCCGTTGATTTTAGACTTGACTTGAGCC
GTTGGAACAATCCTTCTTTCCGTCTGCCCACTCGACAATGCCATTCCCGT
AACAACACATTTGTGCTTGCCAAGTACTCATGTACCACAGTAGTATGAGC
CTCTTTTCATCAGCGTTTCAATCATCTGCTGGCGTCGTGGTTGATTGTCT
ATTACCCTCACGCTTCTCGCATCGGGGGATATCAACGCCACCCACGCACG
ATCACTCGCTGCATTCCATCTCACGCCCTCAATTCATCATATATGCAGCA
CACAGTAGGTACGATGCCCAGCCCTCCGTCTCTCGTGCCCACGGCTGTGG
AGTTGCTACGCTTGGCTCATGGGACGCTTCTTCGGCCGCAGCAGCAAGAA
CAAGGACAGCCACAAGCAGAGGCCGTGGCGGCCTTGCGTGCCCACCTTGC
CGAGGACGACACCGCGAGCATGAAGACAGACCTAAAAGCATTGACACGAT
TGCTAGGTCAAGCTACGATGGACGGGGAAGAAGAGTCTGAGGAGGACAAT
GCGACGACAACCGCCACCACTTCCACGTCCGCCGCGATGCGGTTAGCCAC
CGCGTTCTCAGAAACGCTAAACTTGACGGGTGGAAGGAGGAAGCTATCAA
TGTCTCTTACGTTTTCATCTCTACAGCCTTCTGCCAAGGACGATAAGCAA
GTGCATGCCTCCGCCATGCATGGCGCGGGCGTTGTCAGCCCGTTCATGTC
TCCTAGCTACTGGGCCTCGCCCTCCAACCCCTTGACGACGCCGTCCTTGC
TCAACGAGATTTTTGATTACGTGGGCTTGATAGCCTCACCTCCTTCCATT
TCTCTGTCCATATCCCCTGCGAACTCTATTTCTTTGTCTTCTTTCCACTC
TTCTTCTTCCTCTTCTTCAGCAGCAGCAACAGCTGTACCAGCAGCAGCCG
CAGGAATGACGCCCGATATGGCCGCTGTTGTGGCTGCCCGCACAAATCTT
GGGCACCTAGCATGTGTCTGCCGCCTTTGGAAAGTAACTGCATCGGAGGA
CCGGTACTGGCGGCCACTCTCCACGGCATTTCTGCCCATGTTGGGGACGG
CCCCCACAACCACCCACATGCCGCCGGCTACCAGCACCCCTTCCTCCCCT
TCCCAGCTACAATCGCAATCGCCCTGTCGCGACGCCTTAGTTCAATATGG
TAAATGCCTGGCCATGCCTACCGTGCGCGATGGAGACGACTGGCAGGCCC
ACTTGCTCCTATCTTTCGAGATCCTGGACGAGCGAGACTCCCTACGTTTA
TTTTCGGCTTCGGGGCCCGTGGACCTTATTCTATCCTCCGAATCGGGCTT
GACAGCTCTGCGCCTTACTGGTACCAAGCGCACTGAGGTGTGTTGTCCCT
TCTCGGCTGCCTCGCGAGACCCTGAGAAGCGCCGCTTCAAGAACATCAAG
GACTTTTTCGCCAATGGCTCCCAGCCTCAGTTCCCCGCGGCGTTGCGTGT
GAGGGTAATGGGCAAAGACACACGCACGGGGAAGCAAGCCTTACTTTACA
CCTCGCATCCAGGCACACAACGCTCTGTGAAAGTTTCGACTTTGCAGTAT
TGGCAACAATTTTTGGCGGCAGATAGCTTATTTGTGTGGGAGCCTTGGTC
ACGGTGGAGCACCGGGGATGTGACGCAAACCAATGAGGTGGTGGAAATTA
GCGCATCTTTCTACGTTTCACCGGTGAAAATCGTGAGTCATGATGATAGG
ATGGGAGAGGATGTAGCTGGAGGGATGGATGACGCAGCGGAGGCTGTACA
GGACGGGGATCCTGATCCTCCACAAAACGCAAGTGCACTGTCCAGGGAGC
GCGCGCGTGAGCAATTGCATGTGATTATGGGTGGAGATGAGGGTGCGTAC
TCGTCACACAATTCATTTGTAGCCTTGCAATTCCGTACACTGGACGCTTC
TATCCCTGCGCGGTTTATTAAGGCGGCTTTGGCTGCGGCAGATTCCACGA
CTCCATGAGAGGAAAGCAAACCAGGCAGTGACAACATACATAATTGTGCA
TTTTGAAAGAAATAATTATATTGAAAGCTGAAGG
back to top

Coding sequence (CDS) from alignment at chr16:71616..73699-

>NO16G00190.1 ID=NO16G00190.1|Name=NO16G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at chr16:71616..73699- (Nannochloropsis oceanica)
ATGCAGCACACAGTAGGTACGATGCCCAGCCCTCCGTCTCTCGTGCCCAC
GGCTGTGGAGTTGCTACGCTTGGCTCATGGGACGCTTCTTCGGCCGCAGC
AGCAAGAACAAGGACAGCCACAAGCAGAGGCCGTGGCGGCCTTGCGTGCC
CACCTTGCCGAGGACGACACCGCGAGCATGAAGACAGACCTAAAAGCATT
GACACGATTGCTAGGTCAAGCTACGATGGACGGGGAAGAAGAGTCTGAGG
AGGACAATGCGACGACAACCGCCACCACTTCCACGTCCGCCGCGATGCGG
TTAGCCACCGCGTTCTCAGAAACGCTAAACTTGACGGGTGGAAGGAGGAA
GCTATCAATGTCTCTTACGTTTTCATCTCTACAGCCTTCTGCCAAGGACG
ATAAGCAAGTGCATGCCTCCGCCATGCATGGCGCGGGCGTTGTCAGCCCG
TTCATGTCTCCTAGCTACTGGGCCTCGCCCTCCAACCCCTTGACGACGCC
GTCCTTGCTCAACGAGATTTTTGATTACGTGGGCTTGATAGCCTCACCTC
CTTCCATTTCTCTGTCCATATCCCCTGCGAACTCTATTTCTTTGTCTTCT
TTCCACTCTTCTTCTTCCTCTTCTTCAGCAGCAGCAACAGCTGTACCAGC
AGCAGCCGCAGGAATGACGCCCGATATGGCCGCTGTTGTGGCTGCCCGCA
CAAATCTTGGGCACCTAGCATGTGTCTGCCGCCTTTGGAAAGTAACTGCA
TCGGAGGACCGGTACTGGCGGCCACTCTCCACGGCATTTCTGCCCATGTT
GGGGACGGCCCCCACAACCACCCACATGCCGCCGGCTACCAGCACCCCTT
CCTCCCCTTCCCAGCTACAATCGCAATCGCCCTGTCGCGACGCCTTAGTT
CAATATGGTAAATGCCTGGCCATGCCTACCGTGCGCGATGGAGACGACTG
GCAGGCCCACTTGCTCCTATCTTTCGAGATCCTGGACGAGCGAGACTCCC
TACGTTTATTTTCGGCTTCGGGGCCCGTGGACCTTATTCTATCCTCCGAA
TCGGGCTTGACAGCTCTGCGCCTTACTGGTACCAAGCGCACTGAGGTGTG
TTGTCCCTTCTCGGCTGCCTCGCGAGACCCTGAGAAGCGCCGCTTCAAGA
ACATCAAGGACTTTTTCGCCAATGGCTCCCAGCCTCAGTTCCCCGCGGCG
TTGCGTGTGAGGGTAATGGGCAAAGACACACGCACGGGGAAGCAAGCCTT
ACTTTACACCTCGCATCCAGGCACACAACGCTCTGTGAAAGTTTCGACTT
TGCAGTATTGGCAACAATTTTTGGCGGCAGATAGCTTATTTGTGTGGGAG
CCTTGGTCACGGTGGAGCACCGGGGATGTGACGCAAACCAATGAGGTGGT
GGAAATTAGCGCATCTTTCTACGTTTCACCGGTGAAAATCGTGAGTCATG
ATGATAGGATGGGAGAGGATGTAGCTGGAGGGATGGATGACGCAGCGGAG
GCTGTACAGGACGGGGATCCTGATCCTCCACAAAACGCAAGTGCACTGTC
CAGGGAGCGCGCGCGTGAGCAATTGCATGTGATTATGGGTGGAGATGAGG
GTGCGTACTCGTCACACAATTCATTTGTAGCCTTGCAATTCCGTACACTG
GACGCTTCTATCCCTGCGCGGTTTATTAAGGCGGCTTTGGCTGCGGCAGA
TTCCACGACTCCATGA
back to top
Synonyms
Publications