NO16G00130, NO16G00130 (gene) Nannochloropsis oceanica

Overview
NameNO16G00130
Unique NameNO16G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr16:41976..43109 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:41976..43109 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G00130 vs. NCBI_GenBank
Match: EWM22820.1 (hypothetical protein Naga_100375g2 [Nannochloropsis gaditana])

HSP 1 Score: 326.6 bits (836), Expect = 9.900e-86
Identity = 185/325 (56.92%), Postives = 220/325 (67.69%), Query Frame = 0 
Query:   34 PLHNRPRLCQLTTLGNPEDRTKYPVSNSIALPVPGRPISDDPLEDLKHVHISSSDSAEEASAQGHQDDVVLNEEARTFLHVLEERDPLAPCSMCATGEAHTCPQLGTYDDVRDEAYLQGEGPEMSGISQEERKRIVEARARIMDDEKTPCMICEQHRLQEQMEEEARCVREDASQCLVEYKETQVHPREGQHYRRAGQMRVTRESGPGDIKSMLKTTGYGSHGARESGKGYGDVAWEGGVPMSLTENEATQLSVEGATGQIEAEIEAEPNIGHAVREALSPGAEAAPNPKEVHSNVLRTLKKEGEMDSLRRGEGPGGQLANERYT 359
            P+   PR   LTTLG+P+DR  YP S S   P PGRP   DPL+DLK VH S   S    S   H+++ V+  EA +FLHVLEE DP APC MC  G+A TC  L T D+  DEAY Q EGPE S I +EERK IV+ARAR MDDE+TPC+I EQHRLQEQ+E+E++ V+ED S CLVE KE +   + G H+RRAGQ+RVTRE GP D   MLKT GYGS GARESGKGYGDV WEGG PM LTE++A  +   G  G  +A    E  IG  + E      + + + KEVHS +LR LK+EGEMDSLRR   PGGQLANER+T
Sbjct:   32 PVRGYPR--TLTTLGSPDDRKIYPPSTSSVPPTPGRPTGGDPLKDLKKVHGSFISSPSTIS---HREE-VMRAEASSFLHVLEEHDPSAPCPMCINGDAGTCSSLETRDEAVDEAYEQAEGPEGSEIDREERKSIVQARARDMDDERTPCVIQEQHRLQEQLEDESQSVKEDESTCLVESKEVRT-SQAGGHFRRAGQLRVTREPGPSDDTEMLKTAGYGSQGARESGKGYGDVFWEGGTPMFLTEDKARDMFEHGVAGPTDAAKIREGEIGR-LAELTCDETQGSLDQKEVHSKILRALKEEGEMDSLRRTNHPGGQLANERFT 348
The following BLAST results are available for this feature:
BLAST of NO16G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22820.19.900e-8656.92hypothetical protein Naga_100375g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR089ncniR089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR058ngnoR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00130.1NO16G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00130.1NO16G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00130 ID=NO16G00130|Name=NO16G00130|organism=Nannochloropsis oceanica|type=gene|length=1134bp
ATGCTTGGAATTACAGCCAGCGTGCTGCGCCGCACAACGATATTTGTTCC
CTCGCGACTCACCCGCCTGCAGCCTGCTCTTCTTCAACTGCAGCCCAACC
CCCTCCACAACCGTCCCCGCTTGTGTCAGCTTACTACACTGGGTAACCCT
GAAGATCGTACCAAGTATCCTGTGTCCAACTCTATTGCTCTGCCTGTGCC
TGGCCGCCCAATCAGTGACGACCCCCTCGAGGACCTGAAGCACGTCCACA
TCTCCTCCTCCGATTCCGCTGAAGAAGCCTCTGCTCAGGGCCATCAAGAT
GACGTCGTGCTAAATGAGGAAGCCAGAACATTTCTCCATGTATTGGAGGA
GCGAGATCCCCTGGCGCCTTGTTCGATGTGTGCGACGGGAGAAGCTCACA
CTTGCCCACAACTTGGCACCTATGACGACGTGCGAGACGAGGCATACCTG
CAAGGCGAGGGGCCTGAGATGTCGGGTATCAGTCAAGAGGAGCGGAAACG
CATCGTGGAAGCTCGTGCTCGCATTATGGATGATGAAAAAACACCCTGTA
TGATTTGTGAGCAACATCGCCTACAAGAGCAGATGGAGGAAGAGGCTCGA
TGTGTGCGGGAGGACGCATCGCAGTGTTTGGTGGAGTACAAGGAGACTCA
AGTGCACCCTCGAGAAGGCCAACATTACCGGCGAGCGGGGCAGATGCGCG
TTACTCGAGAGTCAGGTCCGGGCGATATCAAATCAATGCTTAAAACGACA
GGCTATGGGTCGCACGGAGCCCGGGAGAGTGGAAAGGGTTACGGAGACGT
CGCCTGGGAGGGGGGCGTGCCCATGTCTTTGACCGAGAACGAAGCAACAC
AGCTATCTGTAGAAGGCGCGACAGGCCAGATCGAGGCCGAGATAGAGGCG
GAACCAAATATCGGGCACGCAGTACGGGAGGCTTTGTCGCCGGGCGCAGA
GGCTGCGCCTAATCCCAAGGAAGTCCACTCTAATGTGTTGCGTACTCTCA
AGAAGGAGGGGGAAATGGATTCTTTGCGACGAGGGGAAGGTCCGGGAGGA
CAACTGGCAAACGAGCGGTACACACCACCCAACAAAAAGGACAATGAGGC
TAGGGAAGATGGGGGAAAGAAACGCAGGGGATGA
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protein sequence of NO16G00130.1

>NO16G00130.1-protein ID=NO16G00130.1-protein|Name=NO16G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MLGITASVLRRTTIFVPSRLTRLQPALLQLQPNPLHNRPRLCQLTTLGNP
EDRTKYPVSNSIALPVPGRPISDDPLEDLKHVHISSSDSAEEASAQGHQD
DVVLNEEARTFLHVLEERDPLAPCSMCATGEAHTCPQLGTYDDVRDEAYL
QGEGPEMSGISQEERKRIVEARARIMDDEKTPCMICEQHRLQEQMEEEAR
CVREDASQCLVEYKETQVHPREGQHYRRAGQMRVTRESGPGDIKSMLKTT
GYGSHGARESGKGYGDVAWEGGVPMSLTENEATQLSVEGATGQIEAEIEA
EPNIGHAVREALSPGAEAAPNPKEVHSNVLRTLKKEGEMDSLRRGEGPGG
QLANERYTPPNKKDNEAREDGGKKRRG*
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Synonyms
Publications