NO16G00130.1, NO16G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00130.1
Unique NameNO16G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr16:41976..43109 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:41976..43109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00130.1 vs.
Match: EWM22820.1 (hypothetical protein Naga_100375g2 [Nannochloropsis gaditana])

HSP 1 Score: 326.6 bits (836), Expect = 9.900e-86
Identity = 185/325 (56.92%), Postives = 220/325 (67.69%), Query Frame = 0 
Query:   34 PLHNRPRLCQLTTLGNPEDRTKYPVSNSIALPVPGRPISDDPLEDLKHVHISSSDSAEEASAQGHQDDVVLNEEARTFLHVLEERDPLAPCSMCATGEAHTCPQLGTYDDVRDEAYLQGEGPEMSGISQEERKRIVEARARIMDDEKTPCMICEQHRLQEQMEEEARCVREDASQCLVEYKETQVHPREGQHYRRAGQMRVTRESGPGDIKSMLKTTGYGSHGARESGKGYGDVAWEGGVPMSLTENEATQLSVEGATGQIEAEIEAEPNIGHAVREALSPGAEAAPNPKEVHSNVLRTLKKEGEMDSLRRGEGPGGQLANERYT 359
            P+   PR   LTTLG+P+DR  YP S S   P PGRP   DPL+DLK VH S   S    S   H+++V +  EA +FLHVLEE DP APC MC  G+A TC  L T D+  DEAY Q EGPE S I +EERK IV+ARAR MDDE+TPC+I EQHRLQEQ+E+E++ V+ED S CLVE KE +   + G H+RRAGQ+RVTRE GP D   MLKT GYGS GARESGKGYGDV WEGG PM LTE++A  +   G  G  +A    E  IG  + E      + + + KEVHS +LR LK+EGEMDSLRR   PGGQLANER+T
Sbjct:   32 PVRGYPRT--LTTLGSPDDRKIYPPSTSSVPPTPGRPTGGDPLKDLKKVHGSFISSPSTIS---HREEV-MRAEASSFLHVLEEHDPSAPCPMCINGDAGTCSSLETRDEAVDEAYEQAEGPEGSEIDREERKSIVQARARDMDDERTPCVIQEQHRLQEQLEDESQSVKEDESTCLVESKEVRT-SQAGGHFRRAGQLRVTREPGPSDDTEMLKTAGYGSQGARESGKGYGDVFWEGGTPMFLTEDKARDMFEHGVAGPTDAAKIREGEIGR-LAELTCDETQGSLDQKEVHSKILRALKEEGEMDSLRRTNHPGGQLANERFT 348
The following BLAST results are available for this feature:
BLAST of NO16G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22820.19.900e-8656.92hypothetical protein Naga_100375g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00130NO16G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00130.1NO16G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00130.1.cds1NO16G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00130.1 ID=NO16G00130.1|Name=NO16G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
ATGCTTGGAATTACAGCCAGCGTGCTGCGCCGCACAACGATATTTGTTCC
CTCGCGACTCACCCGCCTGCAGCCTGCTCTTCTTCAACTGCAGCCCAACC
CCCTCCACAACCGTCCCCGCTTGTGTCAGCTTACTACACTGGGTAACCCT
GAAGATCGTACCAAGTATCCTGTGTCCAACTCTATTGCTCTGCCTGTGCC
TGGCCGCCCAATCAGTGACGACCCCCTCGAGGACCTGAAGCACGTCCACA
TCTCCTCCTCCGATTCCGCTGAAGAAGCCTCTGCTCAGGGCCATCAAGAT
GACGTCGTGCTAAATGAGGAAGCCAGAACATTTCTCCATGTATTGGAGGA
GCGAGATCCCCTGGCGCCTTGTTCGATGTGTGCGACGGGAGAAGCTCACA
CTTGCCCACAACTTGGCACCTATGACGACGTGCGAGACGAGGCATACCTG
CAAGGCGAGGGGCCTGAGATGTCGGGTATCAGTCAAGAGGAGCGGAAACG
CATCGTGGAAGCTCGTGCTCGCATTATGGATGATGAAAAAACACCCTGTA
TGATTTGTGAGCAACATCGCCTACAAGAGCAGATGGAGGAAGAGGCTCGA
TGTGTGCGGGAGGACGCATCGCAGTGTTTGGTGGAGTACAAGGAGACTCA
AGTGCACCCTCGAGAAGGCCAACATTACCGGCGAGCGGGGCAGATGCGCG
TTACTCGAGAGTCAGGTCCGGGCGATATCAAATCAATGCTTAAAACGACA
GGCTATGGGTCGCACGGAGCCCGGGAGAGTGGAAAGGGTTACGGAGACGT
CGCCTGGGAGGGGGGCGTGCCCATGTCTTTGACCGAGAACGAAGCAACAC
AGCTATCTGTAGAAGGCGCGACAGGCCAGATCGAGGCCGAGATAGAGGCG
GAACCAAATATCGGGCACGCAGTACGGGAGGCTTTGTCGCCGGGCGCAGA
GGCTGCGCCTAATCCCAAGGAAGTCCACTCTAATGTGTTGCGTACTCTCA
AGAAGGAGGGGGAAATGGATTCTTTGCGACGAGGGGAAGGTCCGGGAGGA
CAACTGGCAAACGAGCGGTACACACCACCCAACAAAAAGGACAATGAGGC
TAGGGAAGATGGGGGAAAGAAACGCAGGGGATGA
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protein sequence of NO16G00130.1

>NO16G00130.1-protein ID=NO16G00130.1-protein|Name=NO16G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MLGITASVLRRTTIFVPSRLTRLQPALLQLQPNPLHNRPRLCQLTTLGNP
EDRTKYPVSNSIALPVPGRPISDDPLEDLKHVHISSSDSAEEASAQGHQD
DVVLNEEARTFLHVLEERDPLAPCSMCATGEAHTCPQLGTYDDVRDEAYL
QGEGPEMSGISQEERKRIVEARARIMDDEKTPCMICEQHRLQEQMEEEAR
CVREDASQCLVEYKETQVHPREGQHYRRAGQMRVTRESGPGDIKSMLKTT
GYGSHGARESGKGYGDVAWEGGVPMSLTENEATQLSVEGATGQIEAEIEA
EPNIGHAVREALSPGAEAAPNPKEVHSNVLRTLKKEGEMDSLRRGEGPGG
QLANERYTPPNKKDNEAREDGGKKRRG*
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mRNA from alignment at chr16:41976..43109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00130.1 ID=NO16G00130.1|Name=NO16G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp|location=Sequence derived from alignment at chr16:41976..43109- (Nannochloropsis oceanica)
ATGCTTGGAATTACAGCCAGCGTGCTGCGCCGCACAACGATATTTGTTCC
CTCGCGACTCACCCGCCTGCAGCCTGCTCTTCTTCAACTGCAGCCCAACC
CCCTCCACAACCGTCCCCGCTTGTGTCAGCTTACTACACTGGGTAACCCT
GAAGATCGTACCAAGTATCCTGTGTCCAACTCTATTGCTCTGCCTGTGCC
TGGCCGCCCAATCAGTGACGACCCCCTCGAGGACCTGAAGCACGTCCACA
TCTCCTCCTCCGATTCCGCTGAAGAAGCCTCTGCTCAGGGCCATCAAGAT
GACGTCGTGCTAAATGAGGAAGCCAGAACATTTCTCCATGTATTGGAGGA
GCGAGATCCCCTGGCGCCTTGTTCGATGTGTGCGACGGGAGAAGCTCACA
CTTGCCCACAACTTGGCACCTATGACGACGTGCGAGACGAGGCATACCTG
CAAGGCGAGGGGCCTGAGATGTCGGGTATCAGTCAAGAGGAGCGGAAACG
CATCGTGGAAGCTCGTGCTCGCATTATGGATGATGAAAAAACACCCTGTA
TGATTTGTGAGCAACATCGCCTACAAGAGCAGATGGAGGAAGAGGCTCGA
TGTGTGCGGGAGGACGCATCGCAGTGTTTGGTGGAGTACAAGGAGACTCA
AGTGCACCCTCGAGAAGGCCAACATTACCGGCGAGCGGGGCAGATGCGCG
TTACTCGAGAGTCAGGTCCGGGCGATATCAAATCAATGCTTAAAACGACA
GGCTATGGGTCGCACGGAGCCCGGGAGAGTGGAAAGGGTTACGGAGACGT
CGCCTGGGAGGGGGGCGTGCCCATGTCTTTGACCGAGAACGAAGCAACAC
AGCTATCTGTAGAAGGCGCGACAGGCCAGATCGAGGCCGAGATAGAGGCG
GAACCAAATATCGGGCACGCAGTACGGGAGGCTTTGTCGCCGGGCGCAGA
GGCTGCGCCTAATCCCAAGGAAGTCCACTCTAATGTGTTGCGTACTCTCA
AGAAGGAGGGGGAAATGGATTCTTTGCGACGAGGGGAAGGTCCGGGAGGA
CAACTGGCAAACGAGCGGTACACACCACCCAACAAAAAGGACAATGAGGC
TAGGGAAGATGGGGGAAAGAAACGCAGGGGATGA
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Coding sequence (CDS) from alignment at chr16:41976..43109-

>NO16G00130.1 ID=NO16G00130.1|Name=NO16G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr16:41976..43109- (Nannochloropsis oceanica)
ATGCTTGGAATTACAGCCAGCGTGCTGCGCCGCACAACGATATTTGTTCC
CTCGCGACTCACCCGCCTGCAGCCTGCTCTTCTTCAACTGCAGCCCAACC
CCCTCCACAACCGTCCCCGCTTGTGTCAGCTTACTACACTGGGTAACCCT
GAAGATCGTACCAAGTATCCTGTGTCCAACTCTATTGCTCTGCCTGTGCC
TGGCCGCCCAATCAGTGACGACCCCCTCGAGGACCTGAAGCACGTCCACA
TCTCCTCCTCCGATTCCGCTGAAGAAGCCTCTGCTCAGGGCCATCAAGAT
GACGTCGTGCTAAATGAGGAAGCCAGAACATTTCTCCATGTATTGGAGGA
GCGAGATCCCCTGGCGCCTTGTTCGATGTGTGCGACGGGAGAAGCTCACA
CTTGCCCACAACTTGGCACCTATGACGACGTGCGAGACGAGGCATACCTG
CAAGGCGAGGGGCCTGAGATGTCGGGTATCAGTCAAGAGGAGCGGAAACG
CATCGTGGAAGCTCGTGCTCGCATTATGGATGATGAAAAAACACCCTGTA
TGATTTGTGAGCAACATCGCCTACAAGAGCAGATGGAGGAAGAGGCTCGA
TGTGTGCGGGAGGACGCATCGCAGTGTTTGGTGGAGTACAAGGAGACTCA
AGTGCACCCTCGAGAAGGCCAACATTACCGGCGAGCGGGGCAGATGCGCG
TTACTCGAGAGTCAGGTCCGGGCGATATCAAATCAATGCTTAAAACGACA
GGCTATGGGTCGCACGGAGCCCGGGAGAGTGGAAAGGGTTACGGAGACGT
CGCCTGGGAGGGGGGCGTGCCCATGTCTTTGACCGAGAACGAAGCAACAC
AGCTATCTGTAGAAGGCGCGACAGGCCAGATCGAGGCCGAGATAGAGGCG
GAACCAAATATCGGGCACGCAGTACGGGAGGCTTTGTCGCCGGGCGCAGA
GGCTGCGCCTAATCCCAAGGAAGTCCACTCTAATGTGTTGCGTACTCTCA
AGAAGGAGGGGGAAATGGATTCTTTGCGACGAGGGGAAGGTCCGGGAGGA
CAACTGGCAAACGAGCGGTACACACCACCCAACAAAAAGGACAATGAGGC
TAGGGAAGATGGGGGAAAGAAACGCAGGGGATGA
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Synonyms
Publications