NO16G00060, NO16G00060 (gene) Nannochloropsis oceanica

Overview
NameNO16G00060
Unique NameNO16G00060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1855
Alignment locationchr16:22309..24163 -

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Properties
Property NameValue
Descriptionglycerol-3-phosphatase 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:22309..24163 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036412HAD-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO16G00060 vs. NCBI_GenBank
Match: EWM22825.1 (had-superfamily hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 224.9 bits (572), Expect = 2.000e-55
Identity = 110/147 (74.83%), Postives = 125/147 (85.03%), Query Frame = 0
Query:   19 GLSKKNIKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEV 166
            G     IKAI+YDLDGTLLDTE+LSTEAIQAVVG + KTFTW+IKKKILGMRGEEWG++VVDDL L  Q+EP+ LVK+WE ELE + PTVQLLPGA+EIIQFF SKGLPQ IATSSS  LV HKR HHE H+FGRM+ +VTGDDP+V
Sbjct:   21 GTITNKIKAIVYDLDGTLLDTESLSTEAIQAVVGAYGKTFTWDIKKKILGMRGEEWGRVVVDDLGLSDQIEPMMLVKQWERELEVVTPTVQLLPGAREIIQFFDSKGLPQAIATSSSALLVAHKRTHHEDHVFGRMRTIVTGDDPKV 167          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: CBN79952.1 (GS1-like protein [Ectocarpus siliculosus])

HSP 1 Score: 146.4 bits (368), Expect = 9.000e-32
Identity = 77/152 (50.66%), Postives = 103/152 (67.76%), Query Frame = 0
Query:   18 SGLSKKNIKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEVGEEK 170
            +  S K I+ +++DLDGTLLDTE LS++++Q  VG++ K FTWE+K+KILG+R E W  IV+ +L L GQL    L  +WE  L  ++P V+   GA+ + +     G+PQGIATSSS   V  KRQ+HE  LF RM+ VVTGDDPEV E K
Sbjct:    2 AAFSDKPIRGVVFDLDGTLLDTEELSSQSLQQSVGKFGKQFTWEVKQKILGLRKESWAPIVIAELGLEGQLSWEDLGAQWEHNLHELSPQVKKCDGAETVTKRLKDMGVPQGIATSSSKAAVSIKRQNHE-GLFERMECVVTGDDPEVIEGK 152          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: XP_004346298.2 (HAD-superfamily hydrolase [Capsaspora owczarzaki ATCC 30864] >KJE95142.1 HAD-superfamily hydrolase [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 132.5 bits (332), Expect = 1.300e-27
Identity = 67/145 (46.21%), Postives = 90/145 (62.07%), Query Frame = 0
Query:   25 IKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEVGEEK 170
            +  +++DLDGTLLDTE LS  A+Q V+ R+ KT +WE+K+KILG++G +W  IVVD   LHG +EP  +V  WE   +++    Q LPGA  I    A  G+P  I TSS+   V  KR  H + +F R   VVTGDDPE+   K
Sbjct:    6 VACVLFDLDGTLLDTEPLSDIAMQGVLDRFGKTMSWELKRKILGLKGSDWSVIVVDHFGLHGLIEPAAIVDGWETNFKQLYSRAQKLPGADRITAHLAQLGIPMAICTSSNSAAVELKRAAHPE-MFARCTLVVTGDDPELKNGK 149          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: GAX98986.1 (Hypothetical protein PINS_006851 [Pythium insidiosum])

HSP 1 Score: 111.3 bits (277), Expect = 3.200e-21
Identity = 60/144 (41.67%), Postives = 82/144 (56.94%), Query Frame = 0
Query:   26 KAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEVGEEK 170
            +A+I+DLDGTLLDTE +S  AI  V     K F   I+K ILG     W ++V+ D  L GQ+EP    ++WE  +  M   ++ +PGA   +Q   ++G+P  +ATSSS   V  KRQHH + LF     +V GDD EV   K
Sbjct:    4 QALIFDLDGTLLDTEMISGRAIAQVTEALGKRFEGPIRKAILGRPSAVWTRMVIADCGLEGQIEPRAFAEQWEANMAAMFDEMEEMPGATAFLQRMHARGIPMALATSSSRAAVEAKRQHHAE-LFSYFSVIVCGDDAEVKHGK 146          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: PQM54428.1 (HAD family hydrolase [Deltaproteobacteria bacterium])

HSP 1 Score: 108.6 bits (270), Expect = 2.100e-20
Identity = 64/149 (42.95%), Postives = 89/149 (59.73%), Query Frame = 0
Query:   25 IKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLT----LVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEVGEEK 170
            I  IIYD+DG LLDTE + TE  Q +V  + K F W IKKKI+G R  +  KI+V+ L+L     P+T    L    +V LER   T + LPGAK + + F  +G+PQ IATSSS  +   K + H+K  F + + ++ GDDP++ E K
Sbjct:    5 ISCIIYDMDGLLLDTEGIYTEVTQDIVSEYGKVFDWSIKKKIIGRRSIDAAKIIVESLDL-----PITPQDYLNSRKDVLLERFRDT-KALPGAKALTKHFNQRGIPQAIATSSSSPIFEAKYEKHKK-WFSQFEQIIRGDDPQLKEGK 146          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: PCJ08913.1 (HAD family hydrolase [Planctomycetes bacterium])

HSP 1 Score: 107.8 bits (268), Expect = 3.600e-20
Identity = 65/146 (44.52%), Postives = 87/146 (59.59%), Query Frame = 0
Query:   25 IKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLT-LVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEVGEEK 170
            I  IIYD+DG LLDTE + TE  Q +V  + K F W IKKKI+G R  +  +I+V+ L+L   + P   L    +V LER   T Q LPGAKE+   F   G+PQ +ATSSS  +   K + H+K  F + + +V GDDPE+ E K
Sbjct:    5 ISCIIYDMDGLLLDTEGIYTEVTQEIVAEYGKVFDWTIKKKIIGRRSIQAAQIIVESLDL--PISPQDYLDSRKDVLLERFRDT-QALPGAKELTTHFFKHGIPQALATSSSSPMYEAKYEKHKK-WFSQFKQIVRGDDPELKEGK 146          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: XP_006453373.1 ((DL)-glycerol-3-phosphatase 2 [Citrus clementina] >XP_006474182.1 PREDICTED: (DL)-glycerol-3-phosphatase 2 [Citrus sinensis] >ESR66613.1 hypothetical protein CICLE_v10009343mg [Citrus clementina])

HSP 1 Score: 106.7 bits (265), Expect = 7.900e-20
Identity = 58/154 (37.66%), Postives = 90/154 (58.44%), Query Frame = 0
Query:   18 SGLSKKNIKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKH--LFGRMQAVVTGDDPEVGEEK 170
            +G +KK I  +I+D+DG LLDTE   TE  + ++ R+ KTF W +K K++G +  E  ++ V++  +  +L     + + E  L+ + PT +L+PGA  +I+   +KG+P  +AT S   L RH     +KH  LF  M  VV GDDPEV + K
Sbjct:    3 AGSNKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASHLIRHLHAKGIPMCVATGS---LARHFELKTQKHRELFSLMHHVVRGDDPEVKQGK 153          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: GAY37154.1 (hypothetical protein CUMW_026880 [Citrus unshiu])

HSP 1 Score: 106.7 bits (265), Expect = 7.900e-20
Identity = 58/154 (37.66%), Postives = 90/154 (58.44%), Query Frame = 0
Query:   18 SGLSKKNIKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKH--LFGRMQAVVTGDDPEVGEEK 170
            +G +KK I  +I+D+DG LLDTE   TE  + ++ R+ KTF W +K K++G +  E  ++ V++  +  +L     + + E  L+ + PT +L+PGA  +I+   +KG+P  +AT S   L RH     +KH  LF  M  VV GDDPEV + K
Sbjct:    3 AGSNKKPITHVIFDMDGLLLDTEKFYTEVQELILARYNKTFDWSLKAKMMGKKAVEAAQVFVEETGISDKLSAEDFLVQREETLQTLFPTSELMPGASRLIRHLHAKGIPMCVATGS---LARHFELKTQKHRELFSLMHHVVRGDDPEVKQGK 153          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: OMO96918.1 (HAD-superfamily hydrolase, subfamily IA, variant 3 [Corchorus capsularis])

HSP 1 Score: 106.3 bits (264), Expect = 1.000e-19
Identity = 61/167 (36.53%), Postives = 95/167 (56.89%), Query Frame = 0
Query:    8 TFTVASDYETSGLSKK--NIKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEVGEEKKGE 173
            T   A+D   + ++ K   +  +I+D+DG LLDTE   TE  + ++ R+ KTF W +K K++GM+  E  ++ V++  + G L     + E E  L+++ PT +L+PGA  +IQ   +KG+P  +AT S       K Q H + LF  M  +V GDDPEV   KKG+
Sbjct:   45 TAKAATDSSMAAVAGKRPTVTHVIFDMDGLLLDTEKFYTEVQEIILARFNKTFEWSLKAKMMGMKAIEAARVFVEETGISGSLSAEDFLVEREAMLQKLFPTSELMPGASRLIQHLHAKGIPICLATGSHKRHFELKTQRHGE-LFKLMHHIVLGDDPEV---KKGK 207          
BLAST of NO16G00060 vs. NCBI_GenBank
Match: EPS72999.1 (hypothetical protein M569_01760 [Genlisea aurea])

HSP 1 Score: 105.9 bits (263), Expect = 1.400e-19
Identity = 54/150 (36.00%), Postives = 86/150 (57.33%), Query Frame = 0
Query:   20 LSKKNIKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEVGEEK 170
            LS+ +I  +I+D+DG LLDTE   TE  + ++ R+ KTF W +K K++G +  E   + V++  +   L P   ++E E  L+++ PT QL+PGA  +++   + G+P  +AT S       K Q H   +F  M  +V GDDPEV + K
Sbjct:   12 LSRPSISHVIFDMDGLLLDTEKFYTEVQEIILARYDKTFDWSLKAKMMGKKAIEAAHVFVEESGISESLSPQQFLQEREAMLQKLFPTSQLMPGAAALVRHLGANGIPICVATGSQRSHFELKTQRH-GDVFSLMNHIVLGDDPEVKQGK 160          
The following BLAST results are available for this feature:
BLAST of NO16G00060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22825.12.000e-5574.83had-superfamily hydrolase [Nannochloropsis gaditan... [more]
CBN79952.19.000e-3250.66GS1-like protein [Ectocarpus siliculosus][more]
XP_004346298.21.300e-2746.21HAD-superfamily hydrolase [Capsaspora owczarzaki A... [more]
GAX98986.13.200e-2141.67Hypothetical protein PINS_006851 [Pythium insidios... [more]
PQM54428.12.100e-2042.95HAD family hydrolase [Deltaproteobacteria bacteriu... [more]
PCJ08913.13.600e-2044.52HAD family hydrolase [Planctomycetes bacterium][more]
XP_006453373.17.900e-2037.66(DL)-glycerol-3-phosphatase 2 [Citrus clementina] ... [more]
GAY37154.17.900e-2037.66hypothetical protein CUMW_026880 [Citrus unshiu][more]
OMO96918.11.000e-1936.53HAD-superfamily hydrolase, subfamily IA, variant 3... [more]
EPS72999.11.400e-1936.00hypothetical protein M569_01760 [Genlisea aurea][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR089ncniR089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR058ngnoR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00060.2NO16G00060.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO16G00060.1NO16G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612857gene_10936Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100491g3gene7621Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00060.2NO16G00060.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO16G00060.1NO16G00060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00060 ID=NO16G00060|Name=NO16G00060|organism=Nannochloropsis oceanica|type=gene|length=1855bp
AAGAAGGGCAACGACAGGAATAAGTCCACGACCAGAAGCCACTGGGAGCC
CTGAACGAGGTTAATTCTGGGTGCATTTGGCAGCATCACCGAATCAACCT
CCTGCCCCGCACAACAACAGCCTACGACATGTCTGCGGACACACCCACCA
CCTTCACCGTCGCCAGCGACTATGAAACTAGCGGCCTGAGTAAGAAAAAC
ATAAAGGCCATCATCTACGACCTGGACGGGACCTTGCTGGACACGGAGAC
ACTTTCGACCGAGGCGATCCAAGCGGTGGTAGGGCGCTGGCAGAAGACCT
TCACTTGgtatgtgtatgtatctctgtgtccgtgggagggcgcgcggtca
agatgaacccaaccctccatttttaatatgcacacagGGAAATCAAGAAG
AAGATTCTGGGCATGCGCGGCGAAGAATGGGGCAAGATCGTCGTGGACGg
tacgttgagcaggagcaggctctcctttgctgaatattacaatcctcctc
ctatctcgtatcccgatctccactcagactacccttcctcatgaaaactt
ttagACCTCGAGCTTCATGGACAATTGGAACCCTTGACCTTGGTGAAGGA
GTGGGAAGTGGAGCTAGAACGCATGGCGCCAACCGTCCAGgtatgcgcgg
ctgaaatcaaccctttcttcctttatctacacctgtcgcacgtcccttcg
tggtgatcaattctaccgcaggccgttatatgtcttatggtctctctagc
gtgacactgtacttttaaacgcattctttctcccctctttactctatcct
cctcgcctccttgctatcctcgccacagCTCCTCCCGGGCGCGAAGGAAA
TCATCCAATTCTTTGCTTCCAAAGGCCTACCCCAGGGCATTGCCACGTCA
TCCTCCATGGACCTGGTGCGACATAAGCGGCAACATCACGAGAAGCACCT
GTTCGGGAGGATGCAGGCGGTGGTCACGGGCGATGACCCAGAGGTTGGGG
AGGAGAAGAAGGGGGAGAGAGGGAGGGAGGGAGTGGAAGGATCAAGATCA
GGATGAGGCTAACAAAGACGCCTTAAACCCTTTTCTTATTTTTGATTGAT
GAATGCCCTCAACTCGTTCCACTTCTCTCCTCTCGTCTCACTCCCAGATT
AGACAAGGCAAGCCCGCCCCTGACATTTACTTAGCGGCAGCCCAGCGGAT
GGGGGTAACGCCAGAGGAGTGTCTGGTATTTGAAGACGCTCTGAATGGGg
taagtctccgagagaaagagatagaaggatttgtgagggtgagaggtggg
acggtcgctcactatcagtcttaatgatttagtttccggcttatttattc
ttctttccgcaccatatgcgtccttttttaatttggttgtcaacgtgtaa
atcgtgaggttcaagaagtctaccagtccttcatgcagtcatttatttct
tggtcgcttcctccaccgtgacagGTGCTGTCTGGCAAAGCGGCGGGCAT
GCACGTCGTGGCCATCCCTGACCCTCGCCTGGAATTGGCACCTTTCCACG
AGCATGCACACGAGgtaagggttagcggtagagatatatgacgcaaggaa
accccccaaataaaatgagcaatcatgcaactttcccgcttccttccttc
tttcaacacagGTCCTGGGCGACCTTCTGGCTTTCGAACCTCGGAGTTGG
GGGTGGACAGAAGAAAGCATTTATGCAACTACTGAAAAGCAAAAGGTTGT
TCAATGAATTAAAAAAAAAAACAGTGTGAACAAATACTAATTCATTGAAA
TGTTTTGCTCGGCATTCTTCCATCGTGGGTATTACTTTCTTCCTGGTGTC
GTGTG
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protein sequence of NO16G00060.2

>NO16G00060.2-protein ID=NO16G00060.2-protein|Name=NO16G00060.2|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MSADTPTTFTVASDYETSGLSKKNIKAIIYDLDGTLLDTETLSTEAIQAV
VGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVE
LERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHL
FGRMQAVVTGDDPEVGEEKKGERGREGVEGSRSG*
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protein sequence of NO16G00060.1

>NO16G00060.1-protein ID=NO16G00060.1-protein|Name=NO16G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MSADTPTTFTVASDYETSGLSKKNIKAIIYDLDGTLLDTETLSTEAIQAV
VGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVE
LERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHL
FGRMQAVVTGDDPEIRQGKPAPDIYLAAAQRMGVTPEECLVFEDALNGVL
SGKAAGMHVVAIPDPRLELAPFHEHAHEVLGDLLAFEPRSWGWTEESIYA
TTEKQKVVQ*
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Synonyms
Publications