NO16G00060.1, NO16G00060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00060.1
Unique NameNO16G00060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1006
Alignment locationchr16:22309..24163 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:22309..24163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00060.1 vs.
Match: EWM22825.1 (had-superfamily hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 354.4 bits (908), Expect = 3.100e-94
Identity = 172/234 (73.50%), Postives = 196/234 (83.76%), Query Frame = 0 
Query:   19 GLSKKNIKAIIYDLDGTLLDTETLSTEAIQAVVGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVELERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHLFGRMQAVVTGDDPEIRQGKPAPDIYLAAAQRMGVTPEECLVFEDALNGVLSGKAAGMHVVAIPDPRLELAPFHEHAHEVLGDLLAFEPRSWGWTEESIYATT 253
            G     IKAI+YDLDGTLLDTE+LSTEAIQAVVG + KTFTW+IKKKILGMRGEEWG++VVDDL L  Q+EP+ LVK+WE ELE + PTVQLLPGA+EIIQFF SKGLPQ IATSSS  LV HKR HHE H+FGRM+ +VTGDDP++ +GKPAPDIYL AAQR+GV PEECLVFEDAL GVLSGKAAGM VVAIPDPRL+ A F  HAH+VL  L  F+PRSWGW E++I  +T
Sbjct:   21 GTITNKIKAIVYDLDGTLLDTESLSTEAIQAVVGAYGKTFTWDIKKKILGMRGEEWGRVVVDDLGLSDQIEPMMLVKQWERELEVVTPTVQLLPGAREIIQFFDSKGLPQAIATSSSALLVAHKRTHHEDHVFGRMRTIVTGDDPKVVRGKPAPDIYLEAAQRLGVAPEECLVFEDALTGVLSGKAAGMFVVAIPDPRLDAACFQAHAHQVLKSLDTFDPRSWGWVEDNITFST 254
The following BLAST results are available for this feature:
BLAST of NO16G00060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22825.13.100e-9473.50had-superfamily hydrolase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00060NO16G00060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00060.1NO16G00060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00060.1.cds1NO16G00060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00060.1.cds2NO16G00060.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00060.1.cds3NO16G00060.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00060.1.cds4NO16G00060.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00060.1.cds5NO16G00060.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00060.1.cds6NO16G00060.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO16G00060.1.cds7NO16G00060.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00060.1 ID=NO16G00060.1|Name=NO16G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp
AAGAAGGGCAACGACAGGAATAAGTCCACGACCAGAAGCCACTGGGAGCC
CTGAACGAGGTTAATTCTGGGTGCATTTGGCAGCATCACCGAATCAACCT
CCTGCCCCGCACAACAACAGCCTACGACATGTCTGCGGACACACCCACCA
CCTTCACCGTCGCCAGCGACTATGAAACTAGCGGCCTGAGTAAGAAAAAC
ATAAAGGCCATCATCTACGACCTGGACGGGACCTTGCTGGACACGGAGAC
ACTTTCGACCGAGGCGATCCAAGCGGTGGTAGGGCGCTGGCAGAAGACCT
TCACTTGGGAAATCAAGAAGAAGATTCTGGGCATGCGCGGCGAAGAATGG
GGCAAGATCGTCGTGGACGACCTCGAGCTTCATGGACAATTGGAACCCTT
GACCTTGGTGAAGGAGTGGGAAGTGGAGCTAGAACGCATGGCGCCAACCG
TCCAGCTCCTCCCGGGCGCGAAGGAAATCATCCAATTCTTTGCTTCCAAA
GGCCTACCCCAGGGCATTGCCACGTCATCCTCCATGGACCTGGTGCGACA
TAAGCGGCAACATCACGAGAAGCACCTGTTCGGGAGGATGCAGGCGGTGG
TCACGGGCGATGACCCAGAGATTAGACAAGGCAAGCCCGCCCCTGACATT
TACTTAGCGGCAGCCCAGCGGATGGGGGTAACGCCAGAGGAGTGTCTGGT
ATTTGAAGACGCTCTGAATGGGGTGCTGTCTGGCAAAGCGGCGGGCATGC
ACGTCGTGGCCATCCCTGACCCTCGCCTGGAATTGGCACCTTTCCACGAG
CATGCACACGAGGTCCTGGGCGACCTTCTGGCTTTCGAACCTCGGAGTTG
GGGGTGGACAGAAGAAAGCATTTATGCAACTACTGAAAAGCAAAAGGTTG
TTCAATGAATTAAAAAAAAAAACAGTGTGAACAAATACTAATTCATTGAA
ATGTTTTGCTCGGCATTCTTCCATCGTGGGTATTACTTTCTTCCTGGTGT
CGTGTG
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protein sequence of NO16G00060.1

>NO16G00060.1-protein ID=NO16G00060.1-protein|Name=NO16G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MSADTPTTFTVASDYETSGLSKKNIKAIIYDLDGTLLDTETLSTEAIQAV
VGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVE
LERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHL
FGRMQAVVTGDDPEIRQGKPAPDIYLAAAQRMGVTPEECLVFEDALNGVL
SGKAAGMHVVAIPDPRLELAPFHEHAHEVLGDLLAFEPRSWGWTEESIYA
TTEKQKVVQ*
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mRNA from alignment at chr16:22309..24163-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00060.1 ID=NO16G00060.1|Name=NO16G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp|location=Sequence derived from alignment at chr16:22309..24163- (Nannochloropsis oceanica)
AAGAAGGGCAACGACAGGAATAAGTCCACGACCAGAAGCCACTGGGAGCC
CTGAACGAGGTTAATTCTGGGTGCATTTGGCAGCATCACCGAATCAACCT
CCTGCCCCGCACAACAACAGCCTACGACATGTCTGCGGACACACCCACCA
CCTTCACCGTCGCCAGCGACTATGAAACTAGCGGCCTGAGTAAGAAAAAC
ATAAAGGCCATCATCTACGACCTGGACGGGACCTTGCTGGACACGGAGAC
ACTTTCGACCGAGGCGATCCAAGCGGTGGTAGGGCGCTGGCAGAAGACCT
TCACTTGGTATGTGTATGTATCTCTGTGTCCGTGGGAGGGCGCGCGGTCA
AGATGAACCCAACCCTCCATTTTTAATATGCACACAGGGAAATCAAGAAG
AAGATTCTGGGCATGCGCGGCGAAGAATGGGGCAAGATCGTCGTGGACGG
TACGTTGAGCAGGAGCAGGCTCTCCTTTGCTGAATATTACAATCCTCCTC
CTATCTCGTATCCCGATCTCCACTCAGACTACCCTTCCTCATGAAAACTT
TTAGACCTCGAGCTTCATGGACAATTGGAACCCTTGACCTTGGTGAAGGA
GTGGGAAGTGGAGCTAGAACGCATGGCGCCAACCGTCCAGGTATGCGCGG
CTGAAATCAACCCTTTCTTCCTTTATCTACACCTGTCGCACGTCCCTTCG
TGGTGATCAATTCTACCGCAGGCCGTTATATGTCTTATGGTCTCTCTAGC
GTGACACTGTACTTTTAAACGCATTCTTTCTCCCCTCTTTACTCTATCCT
CCTCGCCTCCTTGCTATCCTCGCCACAGCTCCTCCCGGGCGCGAAGGAAA
TCATCCAATTCTTTGCTTCCAAAGGCCTACCCCAGGGCATTGCCACGTCA
TCCTCCATGGACCTGGTGCGACATAAGCGGCAACATCACGAGAAGCACCT
GTTCGGGAGGATGCAGGCGGTGGTCACGGGCGATGACCCAGAGGTTGGGG
AGGAGAAGAAGGGGGAGAGAGGGAGGGAGGGAGTGGAAGGATCAAGATCA
GGATGAGGCTAACAAAGACGCCTTAAACCCTTTTCTTATTTTTGATTGAT
GAATGCCCTCAACTCGTTCCACTTCTCTCCTCTCGTCTCACTCCCAGATT
AGACAAGGCAAGCCCGCCCCTGACATTTACTTAGCGGCAGCCCAGCGGAT
GGGGGTAACGCCAGAGGAGTGTCTGGTATTTGAAGACGCTCTGAATGGGG
TAAGTCTCCGAGAGAAAGAGATAGAAGGATTTGTGAGGGTGAGAGGTGGG
ACGGTCGCTCACTATCAGTCTTAATGATTTAGTTTCCGGCTTATTTATTC
TTCTTTCCGCACCATATGCGTCCTTTTTTAATTTGGTTGTCAACGTGTAA
ATCGTGAGGTTCAAGAAGTCTACCAGTCCTTCATGCAGTCATTTATTTCT
TGGTCGCTTCCTCCACCGTGACAGGTGCTGTCTGGCAAAGCGGCGGGCAT
GCACGTCGTGGCCATCCCTGACCCTCGCCTGGAATTGGCACCTTTCCACG
AGCATGCACACGAGGTAAGGGTTAGCGGTAGAGATATATGACGCAAGGAA
ACCCCCCAAATAAAATGAGCAATCATGCAACTTTCCCGCTTCCTTCCTTC
TTTCAACACAGGTCCTGGGCGACCTTCTGGCTTTCGAACCTCGGAGTTGG
GGGTGGACAGAAGAAAGCATTTATGCAACTACTGAAAAGCAAAAGGTTGT
TCAATGAATTAAAAAAAAAAACAGTGTGAACAAATACTAATTCATTGAAA
TGTTTTGCTCGGCATTCTTCCATCGTGGGTATTACTTTCTTCCTGGTGTC
GTGTG
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Coding sequence (CDS) from alignment at chr16:22309..24163-

>NO16G00060.1 ID=NO16G00060.1|Name=NO16G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr16:22309..24163- (Nannochloropsis oceanica)
ATGTCTGCGGACACACCCACCACCTTCACCGTCGCCAGCGACTATGAAAC
TAGCGGCCTGAGTAAGAAAAACATAAAGGCCATCATCTACGACCTGGACG
GGACCTTGCTGGACACGGAGACACTTTCGACCGAGGCGATCCAAGCGGTG
GTAGGGCGCTGGCAGAAGACCTTCACTTGGGAAATCAAGAAGAAGATTCT
GGGCATGCGCGGCGAAGAATGGGGCAAGATCGTCGTGGACGACCTCGAGC
TTCATGGACAATTGGAACCCTTGACCTTGGTGAAGGAGTGGGAAGTGGAG
CTAGAACGCATGGCGCCAACCGTCCAGCTCCTCCCGGGCGCGAAGGAAAT
CATCCAATTCTTTGCTTCCAAAGGCCTACCCCAGGGCATTGCCACGTCAT
CCTCCATGGACCTGGTGCGACATAAGCGGCAACATCACGAGAAGCACCTG
TTCGGGAGGATGCAGGCGGTGGTCACGGGCGATGACCCAGAGATTAGACA
AGGCAAGCCCGCCCCTGACATTTACTTAGCGGCAGCCCAGCGGATGGGGG
TAACGCCAGAGGAGTGTCTGGTATTTGAAGACGCTCTGAATGGGGTGCTG
TCTGGCAAAGCGGCGGGCATGCACGTCGTGGCCATCCCTGACCCTCGCCT
GGAATTGGCACCTTTCCACGAGCATGCACACGAGGTCCTGGGCGACCTTC
TGGCTTTCGAACCTCGGAGTTGGGGGTGGACAGAAGAAAGCATTTATGCA
ACTACTGAAAAGCAAAAGGTTGTTCAATGA
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Synonyms
Publications