NO16G00040, NO16G00040 (gene) Nannochloropsis oceanica

Overview
NameNO16G00040
Unique NameNO16G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1077
Alignment locationchr16:4942..6018 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:4942..6018 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO16G00040 vs. NCBI_GenBank
Match: EWM22831.1 (hypothetical protein Naga_100471g2 [Nannochloropsis gaditana])

HSP 1 Score: 169.9 bits (429), Expect = 1.500e-38
Identity = 140/353 (39.66%), Postives = 179/353 (50.71%), Query Frame = 0 
Query:   24 SVGMEGRTTSLPSRSILFKLPLTLTMASSSPPTAFTPSSAIPLLSSFCSTMATSDTSFTRSTTTGVASSPSSLLRVIGQGASGITYVLPSHALSPNSNRRDXXXXXXXXXXXXXXXXXXXXXGDWVVKIGSGPVAAHALRNEALLLRRLATRGVREGVEEVVGLVSC----DGG------EWTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMRPYWSEAEQVDRVDGAAQVRALIRLLLGRVAAQGGVVLTDVQVLAS-TSKDMKSD-----FLLIDLTEGQALDEGADVA----TPTGVAALRAYVGEVATLIVPSVENHSAALQEVEDMGAPALLELVKSLFPLARGE 357
            S G  G T    + S L  LP  +   +SSP T     S IP L S C   +T  +S TRS      S   S LRVIGQGASGITYVLP+ +   +                           D V+KIG+G  A  ALRNEA LL+RLA RGV +GVE++VG   C    DG       E                               LAM+PYW +AEQVDR+ G   VR L+RLL+  VA QGGVV++DVQVL S   ++  +D     FLLIDLTEG  L E  + +    +P   AALR+++GEVA+L+  + E H+AA++E +  G P L ELV+  FP+A  E
Sbjct:  124 SAGSPG-TPHFAASSSLSSLPSIVVKGTSSPVTR-PAQSGIPALQSLCG--STGASSATRS------SLLYSSLRVIGQGASGITYVLPADSYDSD------------ITLPGLDMQELGNNKDVVLKIGTGDAAVKALRNEASLLQRLADRGVGKGVEQLVGFAECQISADGEPLHARYENDADKGSGESSILRPGRQARSMPGKVEQRAVLAMQPYWPQAEQVDRIQGTEGVRELVRLLIRDVAVQGGVVVSDVQVLESGVGEEPAADGNHGTFLLIDLTEGMVLVENIEESPAEKSPVANAALRSFLGEVASLVAYTAEAHTAAVEESKTWGMPVLCELVREAFPMAAEE 454
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BLAST of NO16G00040 vs. NCBI_GenBank
Match: XP_005853525.1 (hypothetical protein NGA_0167102 [Nannochloropsis gaditana CCMP526] >XP_005854469.1 hypothetical protein NGA_0167101 [Nannochloropsis gaditana CCMP526] >EKU21893.1 hypothetical protein NGA_0167101 [Nannochloropsis gaditana CCMP526] >EKU22836.1 hypothetical protein NGA_0167102 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 148.7 bits (374), Expect = 3.500e-32
Identity = 99/230 (43.04%), Postives = 130/230 (56.52%), Query Frame = 0 
Query:  147 DWVVKIGSGPVAAHALRNEALLLRRLATRGVREGVEEVVGLVSC----DGG------EWTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMRPYWSEAEQVDRVDGAAQVRALIRLLLGRVAAQGGVVLTDVQVLAS-TSKDMKSD-----FLLIDLTEGQALDEGADVA----TPTGVAALRAYVGEVATLIVPSVENHSAALQEVEDMGAPALLELVKSLFPLARGE 357
            D V+KIG+G  A  ALRNEA LL+RLA RGV +GVE++VG   C    DG       E                               LAM+PYW +AEQVDR+ G   VR L+RLL+  VA QGGVV++DVQVL S   ++  +D     FLLIDLTEG  L E  + +    +P   AALR+++GEVA+L+  + E H+AA++E +  G P L ELV+  FP+A  E
Sbjct:    9 DVVLKIGTGDAAVKALRNEASLLQRLADRGVGKGVEQLVGFAECQISADGEPLHARYENDADKGSGESSILRPGRQARSMPGKVEQRAVLAMQPYWPQAEQVDRIQGTEGVRELVRLLIRDVAVQGGVVVSDVQVLESGVGEEPAADGNHGTFLLIDLTEGMVLVENIEESPAEKSPVANAALRSFLGEVASLVAYTAEAHTAAVEESKTWGMPVLCELVREAFPMAAEE 238
The following BLAST results are available for this feature:
BLAST of NO16G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22831.11.500e-3839.66hypothetical protein Naga_100471g2 [Nannochloropsi... [more]
XP_005853525.13.500e-3243.04hypothetical protein NGA_0167102 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR089ncniR089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR058ngnoR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO16G00040.1NO16G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO16G00040.1NO16G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO16G00040 ID=NO16G00040|Name=NO16G00040|organism=Nannochloropsis oceanica|type=gene|length=1077bp
ATGGTCGCGAGCACTCCCTCCTTTGTCGCACCATCAGAGGCCTCGCCTCC
TTCTCTATTTCGCACTCGCAGTGTCGGTATGGAAGGCAGAACGACGAGTC
TACCGAGCAGAAGCATCTTATTTAAGCTGCCTCTGACCCTGACGATGGCA
TCATCTTCGCCGCCTACCGCCTTCACACCGTCCTCTGCCATCCCTCTATT
GAGCTCTTTCTGCAGCACCATGGCGACCTCCGATACATCCTTTACTCGGA
GCACGACTACCGGAGTAGCATCATCCCCTTCCTCATTGTTGCGGGTGATA
GGGCAAGGGGCCTCGGGCATCACCTATGTCCTCCCCTCCCACGCCCTTTC
TCCCAACAGTAATAGAAGAGACAAGGACGAAGTTGGAGCCGGTGGCAGCA
GCAGCAGCAGCAGCAGTAGCAGCGACAAAAATGGCGGCGACTGGGTAGTG
AAGATTGGTAGTGGCCCTGTTGCAGCTCATGCCTTGCGAAACGAGGCCTT
GCTCCTTCGGCGACTGGCGACAAGGGGGGTTAGGGAGGGGGTAGAGGAGG
TGGTCGGGCTAGTCTCGTGCGATGGCGGGGAGTGGACAAACGACGACCCA
GACACGAGCAATAGCAGCAGCAGTAGTAGCAGCAGCAGGAAGGCGAAAAA
GAAAGGGACGGAAGAGAAGGTGGTTCTGGCGATGAGGCCCTACTGGTCTG
AGGCCGAACAGGTGGACCGAGTCGATGGCGCCGCTCAAGTCCGGGCTTTG
ATCCGGTTGCTTTTGGGGCGGGTGGCGGCTCAGGGCGGGGTTGTCTTGAC
CGACGTACAGGTGCTGGCGTCAACTTCGAAGGATATGAAGTCCGATTTTC
TTTTGATTGACCTCACGGAAGGGCAGGCCTTGGACGAGGGCGCAGACGTG
GCTACTCCGACTGGTGTGGCGGCACTGCGCGCTTATGTGGGGGAAGTGGC
TACCTTGATCGTGCCAAGCGTCGAGAATCACTCGGCAGCGCTTCAGGAAG
TGGAGGATATGGGCGCTCCGGCGTTGTTGGAATTGGTGAAAAGCTTGTTT
CCTTTGGCGAGAGGCGAGGGGGAATGA
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protein sequence of NO16G00040.1

>NO16G00040.1-protein ID=NO16G00040.1-protein|Name=NO16G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MVASTPSFVAPSEASPPSLFRTRSVGMEGRTTSLPSRSILFKLPLTLTMA
SSSPPTAFTPSSAIPLLSSFCSTMATSDTSFTRSTTTGVASSPSSLLRVI
GQGASGITYVLPSHALSPNSNRRDKDEVGAGGSSSSSSSSSDKNGGDWVV
KIGSGPVAAHALRNEALLLRRLATRGVREGVEEVVGLVSCDGGEWTNDDP
DTSNSSSSSSSSRKAKKKGTEEKVVLAMRPYWSEAEQVDRVDGAAQVRAL
IRLLLGRVAAQGGVVLTDVQVLASTSKDMKSDFLLIDLTEGQALDEGADV
ATPTGVAALRAYVGEVATLIVPSVENHSAALQEVEDMGAPALLELVKSLF
PLARGEGE*
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Synonyms
Publications