NO16G00040.1, NO16G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO16G00040.1
Unique NameNO16G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1077
Alignment locationchr16:4942..6018 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr16genomechr16:4942..6018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO16G00040.1 vs.
Match: EWM22831.1 (hypothetical protein Naga_100471g2 [Nannochloropsis gaditana])

HSP 1 Score: 186.0 bits (471), Expect = 2.000e-43
Identity = 150/353 (42.49%), Postives = 195/353 (55.24%), Query Frame = 0 
Query:   24 SVGMEGRTTSLPSRSILFKLPLTLTMASSSPPTAFTPSSAIPLLSSFCSTMATSDTSFTRSTTTGVASSPSSLLRVIGQGASGITYVLPSHALSPNSNRRDKDEVGAGGSSSSSSSSSDKNGGDWVVKIGSGPVAAHALRNEALLLRRLATRGVREGVEEVVGLVSC----DG----GEWTNDDPDTSNSSSSSSSSRKAKKKG--TEEKVVLAMRPYWSEAEQVDRVDGAAQVRALIRLLLGRVAAQGGVVLTDVQVLAS-TSKDMKSD-----FLLIDLTEGQALDEGADVA----TPTGVAALRAYVGEVATLIVPSVENHSAALQEVEDMGAPALLELVKSLFPLARGE 357
            S G  G T    + S L  LP  +   +SSP T     S IP L S C +  T  +S TRS+         S LRVIGQGASGITYVLP+ +   +      D    G            N  D V+KIG+G  A  ALRNEA LL+RLA RGV +GVE++VG   C    DG      + ND    S  SS     R+A+      E++ VLAM+PYW +AEQVDR+ G   VR L+RLL+  VA QGGVV++DVQVL S   ++  +D     FLLIDLTEG  L E  + +    +P   AALR+++GEVA+L+  + E H+AA++E +  G P L ELV+  FP+A  E
Sbjct:  124 SAGSPG-TPHFAASSSLSSLPSIVVKGTSSPVTR-PAQSGIPALQSLCGS--TGASSATRSSLL------YSSLRVIGQGASGITYVLPADSYDSDITLPGLDMQELG------------NNKDVVLKIGTGDAAVKALRNEASLLQRLADRGVGKGVEQLVGFAECQISADGEPLHARYENDADKGSGESSILRPGRQARSMPGKVEQRAVLAMQPYWPQAEQVDRIQGTEGVRELVRLLIRDVAVQGGVVVSDVQVLESGVGEEPAADGNHGTFLLIDLTEGMVLVENIEESPAEKSPVANAALRSFLGEVASLVAYTAEAHTAAVEESKTWGMPVLCELVREAFPMAAEE 454
The following BLAST results are available for this feature:
BLAST of NO16G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22831.12.000e-4342.49hypothetical protein Naga_100471g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00040NO16G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO16G00040.1NO16G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO16G00040.1.cds1NO16G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO16G00040.1 ID=NO16G00040.1|Name=NO16G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp
ATGGTCGCGAGCACTCCCTCCTTTGTCGCACCATCAGAGGCCTCGCCTCC
TTCTCTATTTCGCACTCGCAGTGTCGGTATGGAAGGCAGAACGACGAGTC
TACCGAGCAGAAGCATCTTATTTAAGCTGCCTCTGACCCTGACGATGGCA
TCATCTTCGCCGCCTACCGCCTTCACACCGTCCTCTGCCATCCCTCTATT
GAGCTCTTTCTGCAGCACCATGGCGACCTCCGATACATCCTTTACTCGGA
GCACGACTACCGGAGTAGCATCATCCCCTTCCTCATTGTTGCGGGTGATA
GGGCAAGGGGCCTCGGGCATCACCTATGTCCTCCCCTCCCACGCCCTTTC
TCCCAACAGTAATAGAAGAGACAAGGACGAAGTTGGAGCCGGTGGCAGCA
GCAGCAGCAGCAGCAGTAGCAGCGACAAAAATGGCGGCGACTGGGTAGTG
AAGATTGGTAGTGGCCCTGTTGCAGCTCATGCCTTGCGAAACGAGGCCTT
GCTCCTTCGGCGACTGGCGACAAGGGGGGTTAGGGAGGGGGTAGAGGAGG
TGGTCGGGCTAGTCTCGTGCGATGGCGGGGAGTGGACAAACGACGACCCA
GACACGAGCAATAGCAGCAGCAGTAGTAGCAGCAGCAGGAAGGCGAAAAA
GAAAGGGACGGAAGAGAAGGTGGTTCTGGCGATGAGGCCCTACTGGTCTG
AGGCCGAACAGGTGGACCGAGTCGATGGCGCCGCTCAAGTCCGGGCTTTG
ATCCGGTTGCTTTTGGGGCGGGTGGCGGCTCAGGGCGGGGTTGTCTTGAC
CGACGTACAGGTGCTGGCGTCAACTTCGAAGGATATGAAGTCCGATTTTC
TTTTGATTGACCTCACGGAAGGGCAGGCCTTGGACGAGGGCGCAGACGTG
GCTACTCCGACTGGTGTGGCGGCACTGCGCGCTTATGTGGGGGAAGTGGC
TACCTTGATCGTGCCAAGCGTCGAGAATCACTCGGCAGCGCTTCAGGAAG
TGGAGGATATGGGCGCTCCGGCGTTGTTGGAATTGGTGAAAAGCTTGTTT
CCTTTGGCGAGAGGCGAGGGGGAATGA
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protein sequence of NO16G00040.1

>NO16G00040.1-protein ID=NO16G00040.1-protein|Name=NO16G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MVASTPSFVAPSEASPPSLFRTRSVGMEGRTTSLPSRSILFKLPLTLTMA
SSSPPTAFTPSSAIPLLSSFCSTMATSDTSFTRSTTTGVASSPSSLLRVI
GQGASGITYVLPSHALSPNSNRRDKDEVGAGGSSSSSSSSSDKNGGDWVV
KIGSGPVAAHALRNEALLLRRLATRGVREGVEEVVGLVSCDGGEWTNDDP
DTSNSSSSSSSSRKAKKKGTEEKVVLAMRPYWSEAEQVDRVDGAAQVRAL
IRLLLGRVAAQGGVVLTDVQVLASTSKDMKSDFLLIDLTEGQALDEGADV
ATPTGVAALRAYVGEVATLIVPSVENHSAALQEVEDMGAPALLELVKSLF
PLARGEGE*
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mRNA from alignment at chr16:4942..6018-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO16G00040.1 ID=NO16G00040.1|Name=NO16G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1077bp|location=Sequence derived from alignment at chr16:4942..6018- (Nannochloropsis oceanica)
ATGGTCGCGAGCACTCCCTCCTTTGTCGCACCATCAGAGGCCTCGCCTCC
TTCTCTATTTCGCACTCGCAGTGTCGGTATGGAAGGCAGAACGACGAGTC
TACCGAGCAGAAGCATCTTATTTAAGCTGCCTCTGACCCTGACGATGGCA
TCATCTTCGCCGCCTACCGCCTTCACACCGTCCTCTGCCATCCCTCTATT
GAGCTCTTTCTGCAGCACCATGGCGACCTCCGATACATCCTTTACTCGGA
GCACGACTACCGGAGTAGCATCATCCCCTTCCTCATTGTTGCGGGTGATA
GGGCAAGGGGCCTCGGGCATCACCTATGTCCTCCCCTCCCACGCCCTTTC
TCCCAACAGTAATAGAAGAGACAAGGACGAAGTTGGAGCCGGTGGCAGCA
GCAGCAGCAGCAGCAGTAGCAGCGACAAAAATGGCGGCGACTGGGTAGTG
AAGATTGGTAGTGGCCCTGTTGCAGCTCATGCCTTGCGAAACGAGGCCTT
GCTCCTTCGGCGACTGGCGACAAGGGGGGTTAGGGAGGGGGTAGAGGAGG
TGGTCGGGCTAGTCTCGTGCGATGGCGGGGAGTGGACAAACGACGACCCA
GACACGAGCAATAGCAGCAGCAGTAGTAGCAGCAGCAGGAAGGCGAAAAA
GAAAGGGACGGAAGAGAAGGTGGTTCTGGCGATGAGGCCCTACTGGTCTG
AGGCCGAACAGGTGGACCGAGTCGATGGCGCCGCTCAAGTCCGGGCTTTG
ATCCGGTTGCTTTTGGGGCGGGTGGCGGCTCAGGGCGGGGTTGTCTTGAC
CGACGTACAGGTGCTGGCGTCAACTTCGAAGGATATGAAGTCCGATTTTC
TTTTGATTGACCTCACGGAAGGGCAGGCCTTGGACGAGGGCGCAGACGTG
GCTACTCCGACTGGTGTGGCGGCACTGCGCGCTTATGTGGGGGAAGTGGC
TACCTTGATCGTGCCAAGCGTCGAGAATCACTCGGCAGCGCTTCAGGAAG
TGGAGGATATGGGCGCTCCGGCGTTGTTGGAATTGGTGAAAAGCTTGTTT
CCTTTGGCGAGAGGCGAGGGGGAATGA
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Coding sequence (CDS) from alignment at chr16:4942..6018-

>NO16G00040.1 ID=NO16G00040.1|Name=NO16G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr16:4942..6018- (Nannochloropsis oceanica)
ATGGTCGCGAGCACTCCCTCCTTTGTCGCACCATCAGAGGCCTCGCCTCC
TTCTCTATTTCGCACTCGCAGTGTCGGTATGGAAGGCAGAACGACGAGTC
TACCGAGCAGAAGCATCTTATTTAAGCTGCCTCTGACCCTGACGATGGCA
TCATCTTCGCCGCCTACCGCCTTCACACCGTCCTCTGCCATCCCTCTATT
GAGCTCTTTCTGCAGCACCATGGCGACCTCCGATACATCCTTTACTCGGA
GCACGACTACCGGAGTAGCATCATCCCCTTCCTCATTGTTGCGGGTGATA
GGGCAAGGGGCCTCGGGCATCACCTATGTCCTCCCCTCCCACGCCCTTTC
TCCCAACAGTAATAGAAGAGACAAGGACGAAGTTGGAGCCGGTGGCAGCA
GCAGCAGCAGCAGCAGTAGCAGCGACAAAAATGGCGGCGACTGGGTAGTG
AAGATTGGTAGTGGCCCTGTTGCAGCTCATGCCTTGCGAAACGAGGCCTT
GCTCCTTCGGCGACTGGCGACAAGGGGGGTTAGGGAGGGGGTAGAGGAGG
TGGTCGGGCTAGTCTCGTGCGATGGCGGGGAGTGGACAAACGACGACCCA
GACACGAGCAATAGCAGCAGCAGTAGTAGCAGCAGCAGGAAGGCGAAAAA
GAAAGGGACGGAAGAGAAGGTGGTTCTGGCGATGAGGCCCTACTGGTCTG
AGGCCGAACAGGTGGACCGAGTCGATGGCGCCGCTCAAGTCCGGGCTTTG
ATCCGGTTGCTTTTGGGGCGGGTGGCGGCTCAGGGCGGGGTTGTCTTGAC
CGACGTACAGGTGCTGGCGTCAACTTCGAAGGATATGAAGTCCGATTTTC
TTTTGATTGACCTCACGGAAGGGCAGGCCTTGGACGAGGGCGCAGACGTG
GCTACTCCGACTGGTGTGGCGGCACTGCGCGCTTATGTGGGGGAAGTGGC
TACCTTGATCGTGCCAAGCGTCGAGAATCACTCGGCAGCGCTTCAGGAAG
TGGAGGATATGGGCGCTCCGGCGTTGTTGGAATTGGTGAAAAGCTTGTTT
CCTTTGGCGAGAGGCGAGGGGGAATGA
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Synonyms
Publications