NO15G03420, NO15G03420 (gene) Nannochloropsis oceanica

Overview
NameNO15G03420
Unique NameNO15G03420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length507
Alignment locationchr15:987883..988389 -

Link to JBrowse

Properties
Property NameValue
DescriptionPermease (Major facilitator superfamily)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:987883..988389 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR020846MFS_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
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BLAST of NO15G03420 vs. NCBI_GenBank
Match: XP_005853905.1 (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >EKU22459.1 permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 121.7 bits (304), Expect = 2.200e-24
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 0 
Query:   80 TVLAMVIVTELIVQVLSAAMVPFFPDFAEKHLGANSTIVGVIFSLYPLSLFLTSLVVGVVSARFGRVFVFTVGLVLLGG 159
            TVLAMVIVTELIVQ+LSAAMVPFFPD A+++L A+STIVGVIFSLYPLSLFLTSLV+G+ SARFGR FV+T GL+LLGG
Sbjct:   86 TVLAMVIVTELIVQILSAAMVPFFPDHAKRYLNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGRAFVYTSGLILLGG 164
The following BLAST results are available for this feature:
BLAST of NO15G03420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853905.12.200e-2482.28permease (major facilitator superfamily) [Nannochl... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03420.1NO15G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|446869gene_4906Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03420.1NO15G03420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03420 ID=NO15G03420|Name=NO15G03420|organism=Nannochloropsis oceanica|type=gene|length=507bp
ATGACGGCAAGCCCTGACTCTCTCTCCTGTCCTCACTCCACCTCTTCCTC
TTCCGGCCCCTCATCCTCTGCCTTCTCCTCTGCAGCCTCGAATGAACCGC
AGCACGAGCACCACAAGCTAGACCTCATGTCCCCCATTCAAAAACAGCAA
CATATTTCCCCCCCCTCTTCACCGCCTTCTTCCTTACTCGATGCCAGCAA
CAGTGCCGCAGCAAAGAGACAAAACCGCATGCGGGTCACGGTCCTGGCAA
TGGTGATCGTGACAGAGCTTATTGTACAAGTTTTGTCTGCCGCAATGGTA
CCCTTCTTCCCTGATTTCGCCGAAAAGCACCTTGGAGCTAATTCGACGAT
TGTGGGAGTGATCTTCTCGCTGTACCCTTTGTCCTTGTTCTTGACGAGCT
TGGTGGTGGGTGTGGTGTCGGCGAGGTTCGGAAGGGTCTTTGTCTTCACG
GTGGGCCTGGTGCTGCTGGGGGGGGTACGGTGGGCTTTGGATTCTGTAGG
GACCTGA
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protein sequence of NO15G03420.1

>NO15G03420.1-protein ID=NO15G03420.1-protein|Name=NO15G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MTASPDSLSCPHSTSSSSGPSSSAFSSAASNEPQHEHHKLDLMSPIQKQQ
HISPPSSPPSSLLDASNSAAAKRQNRMRVTVLAMVIVTELIVQVLSAAMV
PFFPDFAEKHLGANSTIVGVIFSLYPLSLFLTSLVVGVVSARFGRVFVFT
VGLVLLGGVRWALDSVGT*
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Synonyms
Publications