NO15G03420.1, NO15G03420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03420.1
Unique NameNO15G03420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length507
Alignment locationchr15:987883..988389 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:987883..988389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03420.1 vs.
Match: XP_005853905.1 (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526]; EKU22459.1 permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 145.6 bits (366), Expect = 1.400e-31
Identity = 94/156 (60.26%), Postives = 112/156 (71.79%), Query Frame = 0 
Query:   17 SSGPSSSAFSSAASNEPQHEHHKLDLMSPIQKQQHISPPSSPPSSLLDASNS--------------AAAKRQNRMRVTVLAMVIVTELIVQVLSAAMVPFFPDFAEKHLGANSTIVGVIFSLYPLSLFLTSLVVGVVSARFGRVFVFTVGLVLLGG 159
            S+ P S   SS  SNE Q    +LD+ SPI+KQ+H+ P   P SS LD + S               A +RQ+R R TVLAMVIVTELIVQ+LSAAMVPFFPD A+++L A+STIVGVIFSLYPLSLFLTSLV+G+ SARFGR FV+T GL+LLGG
Sbjct:   13 SAPPMSHCSSSCMSNEQQI---RLDITSPIKKQRHL-PALQPSSSSLDCATSYKYSVEANAQAEANTAKRRQSRTRNTVLAMVIVTELIVQILSAAMVPFFPDHAKRYLNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGRAFVYTSGLILLGG 164
The following BLAST results are available for this feature:
BLAST of NO15G03420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853905.11.400e-3160.26permease (major facilitator superfamily) [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03420NO15G03420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03420.1NO15G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03420.1.cds1NO15G03420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03420.1 ID=NO15G03420.1|Name=NO15G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=507bp
ATGACGGCAAGCCCTGACTCTCTCTCCTGTCCTCACTCCACCTCTTCCTC
TTCCGGCCCCTCATCCTCTGCCTTCTCCTCTGCAGCCTCGAATGAACCGC
AGCACGAGCACCACAAGCTAGACCTCATGTCCCCCATTCAAAAACAGCAA
CATATTTCCCCCCCCTCTTCACCGCCTTCTTCCTTACTCGATGCCAGCAA
CAGTGCCGCAGCAAAGAGACAAAACCGCATGCGGGTCACGGTCCTGGCAA
TGGTGATCGTGACAGAGCTTATTGTACAAGTTTTGTCTGCCGCAATGGTA
CCCTTCTTCCCTGATTTCGCCGAAAAGCACCTTGGAGCTAATTCGACGAT
TGTGGGAGTGATCTTCTCGCTGTACCCTTTGTCCTTGTTCTTGACGAGCT
TGGTGGTGGGTGTGGTGTCGGCGAGGTTCGGAAGGGTCTTTGTCTTCACG
GTGGGCCTGGTGCTGCTGGGGGGGGTACGGTGGGCTTTGGATTCTGTAGG
GACCTGA
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protein sequence of NO15G03420.1

>NO15G03420.1-protein ID=NO15G03420.1-protein|Name=NO15G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MTASPDSLSCPHSTSSSSGPSSSAFSSAASNEPQHEHHKLDLMSPIQKQQ
HISPPSSPPSSLLDASNSAAAKRQNRMRVTVLAMVIVTELIVQVLSAAMV
PFFPDFAEKHLGANSTIVGVIFSLYPLSLFLTSLVVGVVSARFGRVFVFT
VGLVLLGGVRWALDSVGT*
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mRNA from alignment at chr15:987883..988389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03420.1 ID=NO15G03420.1|Name=NO15G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=507bp|location=Sequence derived from alignment at chr15:987883..988389- (Nannochloropsis oceanica)
ATGACGGCAAGCCCTGACTCTCTCTCCTGTCCTCACTCCACCTCTTCCTC
TTCCGGCCCCTCATCCTCTGCCTTCTCCTCTGCAGCCTCGAATGAACCGC
AGCACGAGCACCACAAGCTAGACCTCATGTCCCCCATTCAAAAACAGCAA
CATATTTCCCCCCCCTCTTCACCGCCTTCTTCCTTACTCGATGCCAGCAA
CAGTGCCGCAGCAAAGAGACAAAACCGCATGCGGGTCACGGTCCTGGCAA
TGGTGATCGTGACAGAGCTTATTGTACAAGTTTTGTCTGCCGCAATGGTA
CCCTTCTTCCCTGATTTCGCCGAAAAGCACCTTGGAGCTAATTCGACGAT
TGTGGGAGTGATCTTCTCGCTGTACCCTTTGTCCTTGTTCTTGACGAGCT
TGGTGGTGGGTGTGGTGTCGGCGAGGTTCGGAAGGGTCTTTGTCTTCACG
GTGGGCCTGGTGCTGCTGGGGGGGGTACGGTGGGCTTTGGATTCTGTAGG
GACCTGA
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Coding sequence (CDS) from alignment at chr15:987883..988389-

>NO15G03420.1 ID=NO15G03420.1|Name=NO15G03420.1|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at chr15:987883..988389- (Nannochloropsis oceanica)
ATGACGGCAAGCCCTGACTCTCTCTCCTGTCCTCACTCCACCTCTTCCTC
TTCCGGCCCCTCATCCTCTGCCTTCTCCTCTGCAGCCTCGAATGAACCGC
AGCACGAGCACCACAAGCTAGACCTCATGTCCCCCATTCAAAAACAGCAA
CATATTTCCCCCCCCTCTTCACCGCCTTCTTCCTTACTCGATGCCAGCAA
CAGTGCCGCAGCAAAGAGACAAAACCGCATGCGGGTCACGGTCCTGGCAA
TGGTGATCGTGACAGAGCTTATTGTACAAGTTTTGTCTGCCGCAATGGTA
CCCTTCTTCCCTGATTTCGCCGAAAAGCACCTTGGAGCTAATTCGACGAT
TGTGGGAGTGATCTTCTCGCTGTACCCTTTGTCCTTGTTCTTGACGAGCT
TGGTGGTGGGTGTGGTGTCGGCGAGGTTCGGAAGGGTCTTTGTCTTCACG
GTGGGCCTGGTGCTGCTGGGGGGGGTACGGTGGGCTTTGGATTCTGTAGG
GACCTGA
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Synonyms
Publications