NO15G03360, NO15G03360 (gene) Nannochloropsis oceanica

Overview
NameNO15G03360
Unique NameNO15G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3420
Alignment locationchr15:975732..979151 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:975732..979151 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G03360 vs. NCBI_GenBank
Match: EWM22257.1 (hypothetical protein Naga_100376g7 [Nannochloropsis gaditana])

HSP 1 Score: 203.4 bits (516), Expect = 2.600e-48
Identity = 131/217 (60.37%), Postives = 159/217 (73.27%), Query Frame = 0 
Query:  554 DSLLDGLAWRLISTHRPSLDFLLLPPSLLPSLPXXXXXXXLLHSLTSRRAALARAASQDKERAEAASARKMREETLKLSSKLASLKVELAHVTAEETHALAPLLAEKDRVWAAINGGSITSEDSIPPPAASPLPSSLQAKIAALDEARAQIRQVQDRAAEKRGKIEERMEATREEGEKAVRIAREMGLAKAAVSEGMLHVGTEALARELLQAVGLME 771
            D L +G AWRLIS+HRPSLDFLLLPPS  PS         L HSL SR AAL +AA QDKERAE++SARKMREE  K   + + L+ ELA  TA+E   LAPLL EK RVWAAING    S+ S+   ++SP  SSLQ K+AALD+ARA+IR+VQD AA+KR +I+ RM+ TR  GE+AVR AR+MG+ KAAVSEG+L VG EAL RELL+  GL++
Sbjct:   35 DVLFEGGAWRLISSHRPSLDFLLLPPS--PS-SAPSPSPGLFHSLASRHAALVQAAKQDKERAESSSARKMREERQKWKRRTSGLEEELALATAKEAEELAPLLLEKSRVWAAINGQG-ASDASLSSLSSSP-QSSLQVKMAALDDARARIRKVQDCAAKKREEIQRRMDETRRNGERAVRSARDMGVTKAAVSEGVLRVGREALVRELLREAGLID 246
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BLAST of NO15G03360 vs. NCBI_GenBank
Match: EWM22243.1 (hypothetical protein Naga_100195g1 [Nannochloropsis gaditana])

HSP 1 Score: 118.6 bits (296), Expect = 8.500e-23
Identity = 60/74 (81.08%), Postives = 70/74 (94.59%), Query Frame = 0 
Query:  123 RPTKRHRPRRRFSHIKSDILGSKTLVRRAQEEARLRSSRSSASKWQRLLEGVCGGAGTLGTLASVGLMARKTTG 197
            RP+KRHRPRR F+HIK+DIL +KTLVRRAQEEARL++ +SS++KWQRLLEGVCGGAGTLGTLASVGL+ARK TG
Sbjct:  130 RPSKRHRPRRPFAHIKADILRAKTLVRRAQEEARLKTLQSSSTKWQRLLEGVCGGAGTLGTLASVGLLARKATG 203
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BLAST of NO15G03360 vs. NCBI_GenBank
Match: XP_005853906.1 (hypothetical protein NGA_0463900 [Nannochloropsis gaditana CCMP526] >EKU22460.1 hypothetical protein NGA_0463900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 94.7 bits (234), Expect = 1.300e-15
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 0 
Query:  123 RPTKRHRPRRRFSHIKSDILGSKTLVRRAQEEARLRSSRSSASKWQRLLEGVCGGAGTLGTLASVGL 190
            RP+KRHRPRR F+HIK+DIL +KTLVRRAQEEARL++ +SS++KWQRLLEGVCGGAGT G     G+
Sbjct:  130 RPSKRHRPRRPFAHIKADILRAKTLVRRAQEEARLKTLQSSSTKWQRLLEGVCGGAGTRGYACFCGV 196
The following BLAST results are available for this feature:
BLAST of NO15G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22257.12.600e-4860.37hypothetical protein Naga_100376g7 [Nannochloropsi... [more]
EWM22243.18.500e-2381.08hypothetical protein Naga_100195g1 [Nannochloropsi... [more]
XP_005853906.11.300e-1571.64hypothetical protein NGA_0463900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03360.1NO15G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100376g7gene8184Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03360.1NO15G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03360 ID=NO15G03360|Name=NO15G03360|organism=Nannochloropsis oceanica|type=gene|length=3420bp
ATGAGCAGCACCAGCTGGACCAGTAGTGCCTCCCGCAAAAACCGTCGCCG
CCCCTTCCCTGAGGTGTGGCAAGCTTTGGAGGACAAAGAAGATGAGACTC
AGGAAGAAGAAATCAAGCAACGAGTGCACGCAAGCCGAAAAGCTACCACA
CGGCAGCACCACCATCACCAGCAGCACCAGCAACGCGATGATGACGACGG
GGATGATAATGCATCCGACGACGAATATGCGAATGAAGTAAAGGAAGAGG
ACGACGAGGACGACGAGGAGCAGAAAGGCGACAGTGAAGCCTCCCGCCCG
TCTGACTCCTCCTCTTTAGCGCTCATTTCCGGTGGCAGTGGCGGCGGCGA
CAGTAGCAGGAGCCACCGTCCCACCAAACGCCATCGTCCCCGTCGTCGCT
TCTCGCACATCAAGAGTGATATTTTGGGCTCCAAGACCTTGGTAAGACGG
GCGCAGGAAGAAGCCCGCCTACGATCCTCCCGGTCCTCCGCGAGCAAGTG
GCAGCGGTTGTTGGAGGGTGTGTGCGGCGGGGCGGGGACACTGGGGACCT
TAGCCTCGGTGGGCTTGATGGCGCGGAAGACAACTGgtgagcaggagatg
cgggaggcgggggggtgtggcggcggtttggggggtgaaaatgctttggc
tgggacaagagataggaataggctgaggtatcgaatctcaatctgcactc
aaacgcattcattcacgcccatctctctcctatttatttccaagGTGCCT
CAACGGCGTTTGTGGCTTTGTCGGCTCTTGCCTCCTTCTCCTTTGTCTGG
CGTGGGGCCGTGCGTCGACGAGGGGAGGAGGCGGAACGACGCTTGAGTCA
GCTGGCTGCTCTAGAAGACGACCCgtacgtgactcctgtatatatatata
tatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagag
agagagagagagagagagagagagagagagagtcctctatttaatgacta
ccttgactgttgatcgaattttgcttaagtggcatgtccgcaagtcatct
ggttcagcttttccgatgcccttcctccctcccttttccttttcctgccc
tgcagCGGGCGAATTTCGCGCCTCCTGGACCTGGTGGATGCGGATCCACA
TGCATTTTTCCAGAACGACGAGgtggggagggagggagggagggagggag
ggagggagggaggggaaaaagaaggaagcaacgagccagttgaatgtgta
ctgatgtcccgtcacaacaattctgtcatcattctccaccctccctccct
ttttcttccctgcctcccttccttccttcctttcagGTCCTGTCACTTCT
TTCCCGCCCACGCGGCGAGCTTGTTATCTTCCGCGAGGAGACACTGGTTG
AGGAGGCGCTAGAGGGAAAGATGGCCTCGGCGGGGTCCACAGCGTTCTTG
CGACAGgtagggagggagggagggagggagggagggaaggaagagggatg
ctctgggaagcaagaccacggtgtgagtctgcgtttcgttcttcatcttc
atctctgccaccctctagagatgttcaccccttcctcccccccccatccc
tctctccttatcttcccccccatccctctctccttatcttcctccctccc
tccgtccctccctccgtccccccctcctccagCCGCACCTGCAAGCCATC
ACCTCTCGCCTGCGTCGCGCGTACCCTCGACTAGCGCAGGCCATGGACCG
GTGGCTGCTGGTGGAGCTGGAGGACGAGTACTCCCCCCGGGCCTTGTCGC
TCAAGGgtagagagggagggagggagggagggagggagggagggaaggtc
acaggggtgtatgtcctctgggactttgactgactaccaacaaccgatcc
ccttacattccctccctcctcctctccctccatccctcctcccttcactc
ctcccctccatccttccctccttccagACCTGCTCGCCATCCTCTCTTCC
TGGCAGTGGGAAGTGCTCATTTCGGACCGCGAACCGCTTCGACGCCAGCT
GGAGGAAAGCTTAAGGAGGGCTTTGCATGCTCCACAGgtaccctcccctc
cctccctcccctccttcccttctaccttctacctatctttcattccctcc
cctcttgcccgcactcagacgccctcctttcctctctccctccctcccct
cctccctcctattacagGGCCAAGGACCGAAAGGCGACCTGGTAGAGTCC
CTCCTCCTCATCGACAGCCACACCGACGCTCGCTCCCTCTCCCTCCTCAA
AACTCGCCTACCACGGGCCTTCGCCGCCTACCAACGCGGAGAAGAGCGAT
TGGCCCATGCCCTGAGCATCTGGGAGGGTGGCTCCCTCTCCTCCTTCCTC
GAGACCTACCCGTCCTCCCTTCTCCTCCGACGCATTAAAGGCCCTCTTTC
TTTCTCCCTCTCCCGCTCCTCCTCTGCTACCCCCTCCTCCTCTTCCTTCT
CCTCGCCCTCCCCCCCTTCCTCGCCCTTCGTTATTCCTATGCGTCGTCTC
TGGCAGCAAGAGCTGAAGGCCGCCCTCACTCACATGCACACTAGCCACAA
GCACAAAAGCAGAGGACGGCGAGGTGTAGGAGCAGGAGGAGGAGGGGAGG
GTGGAGGTGTCAGCAAGTGCAGCAGCGGTGGTGGCAGCAGTAATAGCAAC
AGCAACGGCCGTGGCAGCAGCAACAGCAGCAAAGCCCTTGACAGCCTCCT
AGACGGACTCGCCTGGCGCCTCATTTCCACCCACCGTCCCTCCCTCGACT
TCCTTCTCCTGCCTCCCTCCTTACTCCCCTCCCTTCCCCTCCCCCTTCCT
CGCCCCTCTCTCCTCCACTCTCTTACCTCCCGCCGGGCCGCCCTTGCGCG
TGCCGCCAGCCAAGACAAAGAGCGGGCCGAGGCCGCAAGCGCGCGGAAAA
TGAGGGAAGAAACTTTAAAATTGAGCAGCAAACTCGCCTCTCTCAAGGTA
GAGCTCGCGCACGTGACCGCCGAAGAGACCCACGCGCTTGCCCCTCTCCT
CGCGGAGAAGGACCGCGTATGGGCCGCAATCAATGGCGGCAGCATCACGA
GCGAAGATTCAATCCCTCCCCCCGCCGCTTCACCGCTTCCTTCGTCGTTG
CAGGCCAAAATAGCGGCGCTTGATGAAGCTCGTGCTCAGATTCGGCAGGT
GCAAGATCGGGCAGCGGAGAAGAGGGGGAAAATAGAAGAGAGGATGGAGG
CGACGAGGGAAGAGGGAGAAAAGGCCGTGAGAATAGCGCGGGAGATGGGG
TTGGCTAAAGCGGCGGTGAGCGAAGGTATGCTTCACGTGGGCACCGAGGC
ACTGGCTCGGGAATTGCTGCAAGCGGTGGGGTTGATGGAAGCGGAGGGTG
TAGAAGCGACGAACAGGTAG
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protein sequence of NO15G03360.1

>NO15G03360.1-protein ID=NO15G03360.1-protein|Name=NO15G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=780bp
MSSTSWTSSASRKNRRRPFPEVWQALEDKEDETQEEEIKQRVHASRKATT
RQHHHHQQHQQRDDDDGDDNASDDEYANEVKEEDDEDDEEQKGDSEASRP
SDSSSLALISGGSGGGDSSRSHRPTKRHRPRRRFSHIKSDILGSKTLVRR
AQEEARLRSSRSSASKWQRLLEGVCGGAGTLGTLASVGLMARKTTGASTA
FVALSALASFSFVWRGAVRRRGEEAERRLSQLAALEDDPGRISRLLDLVD
ADPHAFFQNDEVLSLLSRPRGELVIFREETLVEEALEGKMASAGSTAFLR
QPHLQAITSRLRRAYPRLAQAMDRWLLVELEDEYSPRALSLKDLLAILSS
WQWEVLISDREPLRRQLEESLRRALHAPQGQGPKGDLVESLLLIDSHTDA
RSLSLLKTRLPRAFAAYQRGEERLAHALSIWEGGSLSSFLETYPSSLLLR
RIKGPLSFSLSRSSSATPSSSSFSSPSPPSSPFVIPMRRLWQQELKAALT
HMHTSHKHKSRGRRGVGAGGGGEGGGVSKCSSGGGSSNSNSNGRGSSNSS
KALDSLLDGLAWRLISTHRPSLDFLLLPPSLLPSLPLPLPRPSLLHSLTS
RRAALARAASQDKERAEAASARKMREETLKLSSKLASLKVELAHVTAEET
HALAPLLAEKDRVWAAINGGSITSEDSIPPPAASPLPSSLQAKIAALDEA
RAQIRQVQDRAAEKRGKIEERMEATREEGEKAVRIAREMGLAKAAVSEGM
LHVGTEALARELLQAVGLMEAEGVEATNR*
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Synonyms
Publications