|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr15 | genome | chr15:975732..979151 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G03360.1 vs.
Match: EWM22257.1 (hypothetical protein Naga_100376g7 [Nannochloropsis gaditana]) HSP 1 Score: 201.4 bits (511), Expect = 1.000e-47 Identity = 145/269 (53.90%), Postives = 179/269 (66.54%), Query Frame = 0
Query: 502 MHTSHKHKSRGRRGVGAGGGGEGGGVSKCSSGGGSSNSNSNGRGSSNSSKALDSLLDGLAWRLISTHRPSLDFLLLPPSLLPSLPLPLPRPSLLHSLTSRRAALARAASQDKERAEAASARKMREETLKLSSKLASLKVELAHVTAEETHALAPLLAEKDRVWAAINGGSITSEDSIPPPAASPLPSSLQAKIAALDEARAQIRQVQDRAAEKRGKIEERMEATREEGEKAVRIAREMGLAKAAVSEGMLHVGTEALARELLQAVGLME 771
M S +HK +GR+ K S+G + +N G D L +G AWRLIS+HRPSLDFLLLPPS PS P P P L HSL SR AAL +AA QDKERAE++SARKMREE K + + L+ ELA TA+E LAPLL EK RVWAAING S+ S+ ++SP SSLQ K+AALD+ARA+IR+VQD AA+KR +I+ RM+ TR GE+AVR AR+MG+ KAAVSEG+L VG EAL RELL+ GL++
Sbjct: 1 MLASLRHKEKGRKP------------PKGSTGASRAVANGGDIGP------FDVLFEGGAWRLISSHRPSLDFLLLPPS--PS-SAPSPSPGLFHSLASRHAALVQAAKQDKERAESSSARKMREERQKWKRRTSGLEEELALATAKEAEELAPLLLEKSRVWAAINGQG-ASDASLSSLSSSP-QSSLQVKMAALDDARARIRKVQDCAAKKREEIQRRMDETRRNGERAVRSARDMGVTKAAVSEGVLRVGREALVRELLREAGLID 246
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G03360.1 ID=NO15G03360.1|Name=NO15G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp ATGAGCAGCACCAGCTGGACCAGTAGTGCCTCCCGCAAAAACCGTCGCCG CCCCTTCCCTGAGGTGTGGCAAGCTTTGGAGGACAAAGAAGATGAGACTC AGGAAGAAGAAATCAAGCAACGAGTGCACGCAAGCCGAAAAGCTACCACA CGGCAGCACCACCATCACCAGCAGCACCAGCAACGCGATGATGACGACGG GGATGATAATGCATCCGACGACGAATATGCGAATGAAGTAAAGGAAGAGG ACGACGAGGACGACGAGGAGCAGAAAGGCGACAGTGAAGCCTCCCGCCCG TCTGACTCCTCCTCTTTAGCGCTCATTTCCGGTGGCAGTGGCGGCGGCGA CAGTAGCAGGAGCCACCGTCCCACCAAACGCCATCGTCCCCGTCGTCGCT TCTCGCACATCAAGAGTGATATTTTGGGCTCCAAGACCTTGGTAAGACGG GCGCAGGAAGAAGCCCGCCTACGATCCTCCCGGTCCTCCGCGAGCAAGTG GCAGCGGTTGTTGGAGGGTGTGTGCGGCGGGGCGGGGACACTGGGGACCT TAGCCTCGGTGGGCTTGATGGCGCGGAAGACAACTGGTGCCTCAACGGCG TTTGTGGCTTTGTCGGCTCTTGCCTCCTTCTCCTTTGTCTGGCGTGGGGC CGTGCGTCGACGAGGGGAGGAGGCGGAACGACGCTTGAGTCAGCTGGCTG CTCTAGAAGACGACCCCGGGCGAATTTCGCGCCTCCTGGACCTGGTGGAT GCGGATCCACATGCATTTTTCCAGAACGACGAGGTCCTGTCACTTCTTTC CCGCCCACGCGGCGAGCTTGTTATCTTCCGCGAGGAGACACTGGTTGAGG AGGCGCTAGAGGGAAAGATGGCCTCGGCGGGGTCCACAGCGTTCTTGCGA CAGCCGCACCTGCAAGCCATCACCTCTCGCCTGCGTCGCGCGTACCCTCG ACTAGCGCAGGCCATGGACCGGTGGCTGCTGGTGGAGCTGGAGGACGAGT ACTCCCCCCGGGCCTTGTCGCTCAAGGACCTGCTCGCCATCCTCTCTTCC TGGCAGTGGGAAGTGCTCATTTCGGACCGCGAACCGCTTCGACGCCAGCT GGAGGAAAGCTTAAGGAGGGCTTTGCATGCTCCACAGGGCCAAGGACCGA AAGGCGACCTGGTAGAGTCCCTCCTCCTCATCGACAGCCACACCGACGCT CGCTCCCTCTCCCTCCTCAAAACTCGCCTACCACGGGCCTTCGCCGCCTA CCAACGCGGAGAAGAGCGATTGGCCCATGCCCTGAGCATCTGGGAGGGTG GCTCCCTCTCCTCCTTCCTCGAGACCTACCCGTCCTCCCTTCTCCTCCGA CGCATTAAAGGCCCTCTTTCTTTCTCCCTCTCCCGCTCCTCCTCTGCTAC CCCCTCCTCCTCTTCCTTCTCCTCGCCCTCCCCCCCTTCCTCGCCCTTCG TTATTCCTATGCGTCGTCTCTGGCAGCAAGAGCTGAAGGCCGCCCTCACT CACATGCACACTAGCCACAAGCACAAAAGCAGAGGACGGCGAGGTGTAGG AGCAGGAGGAGGAGGGGAGGGTGGAGGTGTCAGCAAGTGCAGCAGCGGTG GTGGCAGCAGTAATAGCAACAGCAACGGCCGTGGCAGCAGCAACAGCAGC AAAGCCCTTGACAGCCTCCTAGACGGACTCGCCTGGCGCCTCATTTCCAC CCACCGTCCCTCCCTCGACTTCCTTCTCCTGCCTCCCTCCTTACTCCCCT CCCTTCCCCTCCCCCTTCCTCGCCCCTCTCTCCTCCACTCTCTTACCTCC CGCCGGGCCGCCCTTGCGCGTGCCGCCAGCCAAGACAAAGAGCGGGCCGA GGCCGCAAGCGCGCGGAAAATGAGGGAAGAAACTTTAAAATTGAGCAGCA AACTCGCCTCTCTCAAGGTAGAGCTCGCGCACGTGACCGCCGAAGAGACC CACGCGCTTGCCCCTCTCCTCGCGGAGAAGGACCGCGTATGGGCCGCAAT CAATGGCGGCAGCATCACGAGCGAAGATTCAATCCCTCCCCCCGCCGCTT CACCGCTTCCTTCGTCGTTGCAGGCCAAAATAGCGGCGCTTGATGAAGCT CGTGCTCAGATTCGGCAGGTGCAAGATCGGGCAGCGGAGAAGAGGGGGAA AATAGAAGAGAGGATGGAGGCGACGAGGGAAGAGGGAGAAAAGGCCGTGA GAATAGCGCGGGAGATGGGGTTGGCTAAAGCGGCGGTGAGCGAAGGTATG CTTCACGTGGGCACCGAGGCACTGGCTCGGGAATTGCTGCAAGCGGTGGG GTTGATGGAAGCGGAGGGTGTAGAAGCGACGAACAGGTAG back to topprotein sequence of NO15G03360.1 >NO15G03360.1-protein ID=NO15G03360.1-protein|Name=NO15G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=780bp MSSTSWTSSASRKNRRRPFPEVWQALEDKEDETQEEEIKQRVHASRKATT RQHHHHQQHQQRDDDDGDDNASDDEYANEVKEEDDEDDEEQKGDSEASRP SDSSSLALISGGSGGGDSSRSHRPTKRHRPRRRFSHIKSDILGSKTLVRR AQEEARLRSSRSSASKWQRLLEGVCGGAGTLGTLASVGLMARKTTGASTA FVALSALASFSFVWRGAVRRRGEEAERRLSQLAALEDDPGRISRLLDLVD ADPHAFFQNDEVLSLLSRPRGELVIFREETLVEEALEGKMASAGSTAFLR QPHLQAITSRLRRAYPRLAQAMDRWLLVELEDEYSPRALSLKDLLAILSS WQWEVLISDREPLRRQLEESLRRALHAPQGQGPKGDLVESLLLIDSHTDA RSLSLLKTRLPRAFAAYQRGEERLAHALSIWEGGSLSSFLETYPSSLLLR RIKGPLSFSLSRSSSATPSSSSFSSPSPPSSPFVIPMRRLWQQELKAALT HMHTSHKHKSRGRRGVGAGGGGEGGGVSKCSSGGGSSNSNSNGRGSSNSS KALDSLLDGLAWRLISTHRPSLDFLLLPPSLLPSLPLPLPRPSLLHSLTS RRAALARAASQDKERAEAASARKMREETLKLSSKLASLKVELAHVTAEET HALAPLLAEKDRVWAAINGGSITSEDSIPPPAASPLPSSLQAKIAALDEA RAQIRQVQDRAAEKRGKIEERMEATREEGEKAVRIAREMGLAKAAVSEGM LHVGTEALARELLQAVGLMEAEGVEATNR* back to topmRNA from alignment at chr15:975732..979151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G03360.1 ID=NO15G03360.1|Name=NO15G03360.1|organism=Nannochloropsis oceanica|type=mRNA|length=3420bp|location=Sequence derived from alignment at chr15:975732..979151- (Nannochloropsis oceanica) ATGAGCAGCACCAGCTGGACCAGTAGTGCCTCCCGCAAAAACCGTCGCCG
CCCCTTCCCTGAGGTGTGGCAAGCTTTGGAGGACAAAGAAGATGAGACTC
AGGAAGAAGAAATCAAGCAACGAGTGCACGCAAGCCGAAAAGCTACCACA
CGGCAGCACCACCATCACCAGCAGCACCAGCAACGCGATGATGACGACGG
GGATGATAATGCATCCGACGACGAATATGCGAATGAAGTAAAGGAAGAGG
ACGACGAGGACGACGAGGAGCAGAAAGGCGACAGTGAAGCCTCCCGCCCG
TCTGACTCCTCCTCTTTAGCGCTCATTTCCGGTGGCAGTGGCGGCGGCGA
CAGTAGCAGGAGCCACCGTCCCACCAAACGCCATCGTCCCCGTCGTCGCT
TCTCGCACATCAAGAGTGATATTTTGGGCTCCAAGACCTTGGTAAGACGG
GCGCAGGAAGAAGCCCGCCTACGATCCTCCCGGTCCTCCGCGAGCAAGTG
GCAGCGGTTGTTGGAGGGTGTGTGCGGCGGGGCGGGGACACTGGGGACCT
TAGCCTCGGTGGGCTTGATGGCGCGGAAGACAACTGGTGAGCAGGAGATG
CGGGAGGCGGGGGGGTGTGGCGGCGGTTTGGGGGGTGAAAATGCTTTGGC
TGGGACAAGAGATAGGAATAGGCTGAGGTATCGAATCTCAATCTGCACTC
AAACGCATTCATTCACGCCCATCTCTCTCCTATTTATTTCCAAGGTGCCT
CAACGGCGTTTGTGGCTTTGTCGGCTCTTGCCTCCTTCTCCTTTGTCTGG
CGTGGGGCCGTGCGTCGACGAGGGGAGGAGGCGGAACGACGCTTGAGTCA
GCTGGCTGCTCTAGAAGACGACCCGTACGTGACTCCTGTATATATATATA
TATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCCTCTATTTAATGACTA
CCTTGACTGTTGATCGAATTTTGCTTAAGTGGCATGTCCGCAAGTCATCT
GGTTCAGCTTTTCCGATGCCCTTCCTCCCTCCCTTTTCCTTTTCCTGCCC
TGCAGCGGGCGAATTTCGCGCCTCCTGGACCTGGTGGATGCGGATCCACA
TGCATTTTTCCAGAACGACGAGGTGGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGGAAAAAGAAGGAAGCAACGAGCCAGTTGAATGTGTA
CTGATGTCCCGTCACAACAATTCTGTCATCATTCTCCACCCTCCCTCCCT
TTTTCTTCCCTGCCTCCCTTCCTTCCTTCCTTTCAGGTCCTGTCACTTCT
TTCCCGCCCACGCGGCGAGCTTGTTATCTTCCGCGAGGAGACACTGGTTG
AGGAGGCGCTAGAGGGAAAGATGGCCTCGGCGGGGTCCACAGCGTTCTTG
CGACAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGAGGGATG
CTCTGGGAAGCAAGACCACGGTGTGAGTCTGCGTTTCGTTCTTCATCTTC
ATCTCTGCCACCCTCTAGAGATGTTCACCCCTTCCTCCCCCCCCCATCCC
TCTCTCCTTATCTTCCCCCCCATCCCTCTCTCCTTATCTTCCTCCCTCCC
TCCGTCCCTCCCTCCGTCCCCCCCTCCTCCAGCCGCACCTGCAAGCCATC
ACCTCTCGCCTGCGTCGCGCGTACCCTCGACTAGCGCAGGCCATGGACCG
GTGGCTGCTGGTGGAGCTGGAGGACGAGTACTCCCCCCGGGCCTTGTCGC
TCAAGGGTAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGTC
ACAGGGGTGTATGTCCTCTGGGACTTTGACTGACTACCAACAACCGATCC
CCTTACATTCCCTCCCTCCTCCTCTCCCTCCATCCCTCCTCCCTTCACTC
CTCCCCTCCATCCTTCCCTCCTTCCAGACCTGCTCGCCATCCTCTCTTCC
TGGCAGTGGGAAGTGCTCATTTCGGACCGCGAACCGCTTCGACGCCAGCT
GGAGGAAAGCTTAAGGAGGGCTTTGCATGCTCCACAGGTACCCTCCCCTC
CCTCCCTCCCCTCCTTCCCTTCTACCTTCTACCTATCTTTCATTCCCTCC
CCTCTTGCCCGCACTCAGACGCCCTCCTTTCCTCTCTCCCTCCCTCCCCT
CCTCCCTCCTATTACAGGGCCAAGGACCGAAAGGCGACCTGGTAGAGTCC
CTCCTCCTCATCGACAGCCACACCGACGCTCGCTCCCTCTCCCTCCTCAA
AACTCGCCTACCACGGGCCTTCGCCGCCTACCAACGCGGAGAAGAGCGAT
TGGCCCATGCCCTGAGCATCTGGGAGGGTGGCTCCCTCTCCTCCTTCCTC
GAGACCTACCCGTCCTCCCTTCTCCTCCGACGCATTAAAGGCCCTCTTTC
TTTCTCCCTCTCCCGCTCCTCCTCTGCTACCCCCTCCTCCTCTTCCTTCT
CCTCGCCCTCCCCCCCTTCCTCGCCCTTCGTTATTCCTATGCGTCGTCTC
TGGCAGCAAGAGCTGAAGGCCGCCCTCACTCACATGCACACTAGCCACAA
GCACAAAAGCAGAGGACGGCGAGGTGTAGGAGCAGGAGGAGGAGGGGAGG
GTGGAGGTGTCAGCAAGTGCAGCAGCGGTGGTGGCAGCAGTAATAGCAAC
AGCAACGGCCGTGGCAGCAGCAACAGCAGCAAAGCCCTTGACAGCCTCCT
AGACGGACTCGCCTGGCGCCTCATTTCCACCCACCGTCCCTCCCTCGACT
TCCTTCTCCTGCCTCCCTCCTTACTCCCCTCCCTTCCCCTCCCCCTTCCT
CGCCCCTCTCTCCTCCACTCTCTTACCTCCCGCCGGGCCGCCCTTGCGCG
TGCCGCCAGCCAAGACAAAGAGCGGGCCGAGGCCGCAAGCGCGCGGAAAA
TGAGGGAAGAAACTTTAAAATTGAGCAGCAAACTCGCCTCTCTCAAGGTA
GAGCTCGCGCACGTGACCGCCGAAGAGACCCACGCGCTTGCCCCTCTCCT
CGCGGAGAAGGACCGCGTATGGGCCGCAATCAATGGCGGCAGCATCACGA
GCGAAGATTCAATCCCTCCCCCCGCCGCTTCACCGCTTCCTTCGTCGTTG
CAGGCCAAAATAGCGGCGCTTGATGAAGCTCGTGCTCAGATTCGGCAGGT
GCAAGATCGGGCAGCGGAGAAGAGGGGGAAAATAGAAGAGAGGATGGAGG
CGACGAGGGAAGAGGGAGAAAAGGCCGTGAGAATAGCGCGGGAGATGGGG
TTGGCTAAAGCGGCGGTGAGCGAAGGTATGCTTCACGTGGGCACCGAGGC
ACTGGCTCGGGAATTGCTGCAAGCGGTGGGGTTGATGGAAGCGGAGGGTG
TAGAAGCGACGAACAGGTAG back to topCoding sequence (CDS) from alignment at chr15:975732..979151- >NO15G03360.1 ID=NO15G03360.1|Name=NO15G03360.1|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at chr15:975732..979151- (Nannochloropsis oceanica) ATGAGCAGCACCAGCTGGACCAGTAGTGCCTCCCGCAAAAACCGTCGCCG CCCCTTCCCTGAGGTGTGGCAAGCTTTGGAGGACAAAGAAGATGAGACTC AGGAAGAAGAAATCAAGCAACGAGTGCACGCAAGCCGAAAAGCTACCACA CGGCAGCACCACCATCACCAGCAGCACCAGCAACGCGATGATGACGACGG GGATGATAATGCATCCGACGACGAATATGCGAATGAAGTAAAGGAAGAGG ACGACGAGGACGACGAGGAGCAGAAAGGCGACAGTGAAGCCTCCCGCCCG TCTGACTCCTCCTCTTTAGCGCTCATTTCCGGTGGCAGTGGCGGCGGCGA CAGTAGCAGGAGCCACCGTCCCACCAAACGCCATCGTCCCCGTCGTCGCT TCTCGCACATCAAGAGTGATATTTTGGGCTCCAAGACCTTGGTAAGACGG GCGCAGGAAGAAGCCCGCCTACGATCCTCCCGGTCCTCCGCGAGCAAGTG GCAGCGGTTGTTGGAGGGTGTGTGCGGCGGGGCGGGGACACTGGGGACCT TAGCCTCGGTGGGCTTGATGGCGCGGAAGACAACTGGTGCCTCAACGGCG TTTGTGGCTTTGTCGGCTCTTGCCTCCTTCTCCTTTGTCTGGCGTGGGGC CGTGCGTCGACGAGGGGAGGAGGCGGAACGACGCTTGAGTCAGCTGGCTG CTCTAGAAGACGACCCCGGGCGAATTTCGCGCCTCCTGGACCTGGTGGAT GCGGATCCACATGCATTTTTCCAGAACGACGAGGTCCTGTCACTTCTTTC CCGCCCACGCGGCGAGCTTGTTATCTTCCGCGAGGAGACACTGGTTGAGG AGGCGCTAGAGGGAAAGATGGCCTCGGCGGGGTCCACAGCGTTCTTGCGA CAGCCGCACCTGCAAGCCATCACCTCTCGCCTGCGTCGCGCGTACCCTCG ACTAGCGCAGGCCATGGACCGGTGGCTGCTGGTGGAGCTGGAGGACGAGT ACTCCCCCCGGGCCTTGTCGCTCAAGGACCTGCTCGCCATCCTCTCTTCC TGGCAGTGGGAAGTGCTCATTTCGGACCGCGAACCGCTTCGACGCCAGCT GGAGGAAAGCTTAAGGAGGGCTTTGCATGCTCCACAGGGCCAAGGACCGA AAGGCGACCTGGTAGAGTCCCTCCTCCTCATCGACAGCCACACCGACGCT CGCTCCCTCTCCCTCCTCAAAACTCGCCTACCACGGGCCTTCGCCGCCTA CCAACGCGGAGAAGAGCGATTGGCCCATGCCCTGAGCATCTGGGAGGGTG GCTCCCTCTCCTCCTTCCTCGAGACCTACCCGTCCTCCCTTCTCCTCCGA CGCATTAAAGGCCCTCTTTCTTTCTCCCTCTCCCGCTCCTCCTCTGCTAC CCCCTCCTCCTCTTCCTTCTCCTCGCCCTCCCCCCCTTCCTCGCCCTTCG TTATTCCTATGCGTCGTCTCTGGCAGCAAGAGCTGAAGGCCGCCCTCACT CACATGCACACTAGCCACAAGCACAAAAGCAGAGGACGGCGAGGTGTAGG AGCAGGAGGAGGAGGGGAGGGTGGAGGTGTCAGCAAGTGCAGCAGCGGTG GTGGCAGCAGTAATAGCAACAGCAACGGCCGTGGCAGCAGCAACAGCAGC AAAGCCCTTGACAGCCTCCTAGACGGACTCGCCTGGCGCCTCATTTCCAC CCACCGTCCCTCCCTCGACTTCCTTCTCCTGCCTCCCTCCTTACTCCCCT CCCTTCCCCTCCCCCTTCCTCGCCCCTCTCTCCTCCACTCTCTTACCTCC CGCCGGGCCGCCCTTGCGCGTGCCGCCAGCCAAGACAAAGAGCGGGCCGA GGCCGCAAGCGCGCGGAAAATGAGGGAAGAAACTTTAAAATTGAGCAGCA AACTCGCCTCTCTCAAGGTAGAGCTCGCGCACGTGACCGCCGAAGAGACC CACGCGCTTGCCCCTCTCCTCGCGGAGAAGGACCGCGTATGGGCCGCAAT CAATGGCGGCAGCATCACGAGCGAAGATTCAATCCCTCCCCCCGCCGCTT CACCGCTTCCTTCGTCGTTGCAGGCCAAAATAGCGGCGCTTGATGAAGCT CGTGCTCAGATTCGGCAGGTGCAAGATCGGGCAGCGGAGAAGAGGGGGAA AATAGAAGAGAGGATGGAGGCGACGAGGGAAGAGGGAGAAAAGGCCGTGA GAATAGCGCGGGAGATGGGGTTGGCTAAAGCGGCGGTGAGCGAAGGTATG CTTCACGTGGGCACCGAGGCACTGGCTCGGGAATTGCTGCAAGCGGTGGG GTTGATGGAAGCGGAGGGTGTAGAAGCGACGAACAGGTAG back to top
|