NO15G03290, NO15G03290 (gene) Nannochloropsis oceanica

Overview
NameNO15G03290
Unique NameNO15G03290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4087
Alignment locationchr15:959703..963789 -

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Properties
Property NameValue
DescriptionSignal recognition particle subunit SRP54
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:959703..963789 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:00083127S RNA binding
GO:0005525GTP binding
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: INTERPRO
TermDefinition
IPR036891Signal_recog_part_SRP54_M_sf
IPR027417P-loop_NTPase
IPR022941SRP54
IPR004125Signal_recog_particle_SRP54_M
IPR013822Signal_recog_particl_SRP54_hlx
IPR003593AAA+_ATPase
IPR000897SRP54_GTPase_dom
Homology
BLAST of NO15G03290 vs. NCBI_GenBank
Match: XP_005717012.1 (signal recognition particle SRP54 homolog ffh [Chondrus crispus] >CDF37193.1 signal recognition particle SRP54 homolog ffh [Chondrus crispus])

HSP 1 Score: 474.6 bits (1220), Expect = 4.500e-130
Identity = 253/440 (57.50%), Postives = 322/440 (73.18%), Query Frame = 0
Query:   73 LAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELI-QASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRMSNKLSEKTGFDPSKG 512
            + G   I+E N+ GA++DVKRALLDADVNL+V NALL  +K +A+G DVT GV P Q  +KIM++EL  +MG+ Q+ L  +    PTV+LLAGLQGAGKTTAAAKLALYC            V+M+AAD+YRPAAIDQL+TLG+ I V+VF MGTD +P +I RKGL++ K     T+IVDTAGRQVID KLMKE+K +K+  K  E LLVVDAMTGQEAAT+T  FNDE+G+TGAILTKLDGDTRGGAALSV+ VSG PIKFIGVGE ++KLEPFYP+RMASRILGMGDV+T+VEKAQD +++ +A  + RKMM   FDF+DF+ QT+M+S+MGSL G+MKM+PG+ G +    + E E KL     +I  M  +ER +P++L   P S  R +RI   SGRS+ +AK    +F  +R MM RMS ++       P++G
Sbjct:    1 MRGVDKITEKNVTGAMKDVKRALLDADVNLRVVNALLKQIKARAVGADVTPGVEPGQMLVKIMHEELTKIMGSNQAPLANRTDGEPTVVLLAGLQGAGKTTAAAKLALYCLKEE------RSVMMIAADVYRPAAIDQLKTLGKSIEVDVFQMGTDVNPREIVRKGLQEGKTRKINTIIVDTAGRQVIDAKLMKELKDIKSVSKADETLLVVDAMTGQEAATLTRSFNDEVGITGAILTKLDGDTRGGAALSVQQVSGSPIKFIGVGEKVQKLEPFYPERMASRILGMGDVLTIVEKAQDVMDEAEAEKMTRKMMENKFDFNDFLKQTKMLSQMGSLGGLMKMMPGIGGQINESKLKEAEVKLKVADSIIKSMTKQERGNPELLYTAPSSRSRVERIANGSGRSLAQAKNMISDFQKMRTMMQRMSKQMVGGPDGTPAEG 434          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: XP_002287312.1 (signal recognition particle 54 kDA subunit [Thalassiosira pseudonana CCMP1335] >EED94755.1 signal recognition particle 54 kDA subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 468.0 bits (1203), Expect = 4.200e-128
Identity = 249/450 (55.33%), Postives = 327/450 (72.67%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSEL--------IQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRMSNK 500
            M D ++N L    K+  G++ ++E +I  AL+ V+RALLDADVNL V  AL+D VK ++LG +VTKGVT +Q+FIK MYDEL+D+MG E +E            +  P VILLAGLQGAGKTTAA KLA     R        KVL+VAAD+YRPAAI+QL+ LG++IGVEVFSMG DADP DIA++ +EKAK EGF TV+VDTAGRQV+DE+LM+E++ VK  V+P E LLVVDAMTGQ AA++TA F+  +G++GAILTKLDGD+RGGAA+S+RGVSGKPIKF+GVGE    LEPFYPDRMASRILGMGDV++LVEKA  E++  DA  +  KM    FDFDDFMTQ+RM+S+MGS++G+ KM+PGM  ++    M + E+++   + MI  M  +ER +P +LL +  +  R  RI + SG + E+   F  EF  +R M++RM+ +
Sbjct:    1 MFDQLSNALTEVAKNFGGKQRMTENSIQPALKSVRRALLDADVNLDVATALIDGVKRRSLGKEVTKGVTAEQQFIKAMYDELLDMMGGEANESNTMATLAHSSVANEPAVILLAGLQGAGKTTAAGKLAFRLPKRN------RKVLLVAADVYRPAAIEQLQILGKQIGVEVFSMGVDADPADIAKEAVEKAKREGFDTVVVDTAGRQVVDEELMEELRRVKKTVEPDETLLVVDAMTGQAAASLTASFDAAVGISGAILTKLDGDSRGGAAVSIRGVSGKPIKFVGVGEKTNDLEPFYPDRMASRILGMGDVISLVEKASMEVSDADAAKMQEKMAKAEFDFDDFMTQSRMVSKMGSMAGVAKMLPGMGNMIDSSQMRQVEERIKRSEAMICSMNKKERANPGLLLTDKSARSRLMRITKGSGLAFEDGLAFMSEFQKMRTMISRMAKQ 444          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: WP_106920888.1 (signal recognition particle protein [filamentous cyanobacterium CCP3] >PSR18254.1 signal recognition particle protein [filamentous cyanobacterium CCP3])

HSP 1 Score: 467.2 bits (1201), Expect = 7.200e-128
Identity = 249/439 (56.72%), Postives = 322/439 (73.35%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRM 497
            M + +++ L  A KSL GQ  ISE NID ALR+V+RALL+ADVNL+V    +  VKE ALG++V KGV+PDQ+FIK++ DELV LMG   + L  +   PTV+L+AGLQG GKTTA AKLAL+ +     T      L+VA D+YRPAA+DQL TLG++I V VF +GTDA+P+DIAR+G+EKAKA+G  TVIVDTAGR  ID K+M E+  +KTA+ P EVLLVVDAMTGQEAA +T  F+DEIG+TGAILTK+DGD+RGGAALSVR +SG+PIKFIGVGE +E L+PFYPDRMASRILGMGDV+TLVEKAQ+ ++  DA  + +K++   FDFDDF+ Q R++  MGSL G+MK+IPGM   + GD + +GE +L   + MIN M  +ERK P +L  +P    R +RI   SG   ++      +F+ +R MM +M
Sbjct:    1 MFEALSDRLESAWKSLRGQDKISETNIDSALREVRRALLEADVNLQVVKDFIAQVKENALGIEVVKGVSPDQQFIKVVNDELVRLMGDTNAPLANSPTKPTVVLMAGLQGTGKTTATAKLALHLRKENRST------LLVATDVYRPAAVDQLVTLGKQIDVPVFELGTDANPVDIARQGVEKAKADGVDTVIVDTAGRLQIDPKMMAELANIKTAIAPDEVLLVVDAMTGQEAANLTRTFHDEIGITGAILTKMDGDSRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEAVDIADAEKLTQKILEAEFDFDDFLKQMRLMKTMGSLGGIMKLIPGMGKQITGDMLEQGEAQLKRCEAMINSMTTQERKQPNLLSSSPS---RRRRIAAGSGHQEKDVGKLVSDFTKMRTMMQQM 430          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: WP_106866821.1 (MULTISPECIES: signal recognition particle protein [unclassified Cyanobacteria (miscellaneous)] >PSN16072.1 signal recognition particle protein [filamentous cyanobacterium CCT1] >PSN81131.1 signal recognition particle protein [filamentous cyanobacterium CCP4])

HSP 1 Score: 466.5 bits (1199), Expect = 1.200e-127
Identity = 249/439 (56.72%), Postives = 322/439 (73.35%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRM 497
            M + +++ L  A KSL GQ  ISE NID ALR+V+RALL+ADVNL+V    +  VKE ALG++V KGV+PDQ+FIK++ DELV LMG   + L  +   PTV+L+AGLQG GKTTA AKLAL+ +     T      L+VA D+YRPAA+DQL TLG++I V VF +GT+A+P+DIAR+G+EKAKA+G  TVIVDTAGR  ID K+M E+  +KTA+ P EVLLVVDAMTGQEAA +T  F+DEIG+TGAILTK+DGD+RGGAALSVR +SG+PIKFIGVGE +E L+PFYPDRMASRILGMGDV+TLVEKAQ+ ++  DA  + +K++   FDFDDF+ Q R++  MGSL G+MK+IPGM   + GD + +GE +L   + MIN M  EERK P +L  +P    R +RI   SG   ++      +F+ +R MM +M
Sbjct:    1 MFEALSDRLESAWKSLRGQDKISETNIDSALREVRRALLEADVNLQVVKDFIAQVKENALGIEVVKGVSPDQQFIKVVNDELVRLMGDTNAPLANSPTKPTVVLMAGLQGTGKTTATAKLALHLRKENRST------LLVATDVYRPAAVDQLVTLGKQIDVPVFELGTEANPVDIARQGVEKAKADGVDTVIVDTAGRLQIDPKMMAELANIKTAIAPDEVLLVVDAMTGQEAANLTRTFHDEIGITGAILTKMDGDSRGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEAVDIADAEKLTQKILEAEFDFDDFLKQMRLMKTMGSLGGIMKLIPGMGKQITGDMLEQGEAQLKRCEAMINSMTTEERKHPNLLSSSPS---RRRRIAAGSGHQEKDVGKLVSDFTKMRTMMQQM 430          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: WP_017299489.1 (signal recognition particle protein [Nodosilinea nodulosa])

HSP 1 Score: 464.5 bits (1194), Expect = 4.700e-127
Identity = 248/439 (56.49%), Postives = 321/439 (73.12%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRM 497
            M + +++ L  A KSL GQ  ISE+NID ALR+V+RALL+ADVNL+V    +  VKE ALG++V KGV+PDQ+FIK++ DELV LMG   + L  A   PTV+L+AGLQG GKTTA AKLAL+ +     T      L+VA D+YRPAA+DQL TLG++I V VF +GTDA+P+DIAR+G+E+AKA+G  TVIVDTAGR  ID K+M E+  +KTA+ P EVLLVVDAMTGQEAA +T  F+D+IG+TGAILTK+DGD RGGAALSVR +SG+PIKFIGVGE +E L+PFYPDRMASRILGMGDV+TLVEKAQ+ ++  DA  + +K++   FDFDDF+ Q R +  MGSL G+MK+IPGM   + GD + +GE +L   + MIN M   ERK P +L  +P    R +RI + SG   ++      +F+ +R MM +M
Sbjct:    1 MFEALSDRLESAWKSLRGQDKISESNIDSALREVRRALLEADVNLQVIKDFIAQVKENALGIEVVKGVSPDQQFIKVVNDELVRLMGDTNAPLANAPTKPTVVLMAGLQGTGKTTATAKLALHLRKENRST------LLVATDVYRPAAVDQLVTLGKQIDVPVFELGTDANPVDIARRGVEQAKADGIDTVIVDTAGRLQIDPKMMGELADIKTAIAPDEVLLVVDAMTGQEAANLTRTFHDQIGITGAILTKMDGDARGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEAVDLGDAEKLQQKILEAEFDFDDFLKQMRFMKSMGSLGGIMKLIPGMGKQITGDMLEQGEAQLKRCEAMINSMTTAERKQPNLLSSSPS---RRRRIAKGSGHQEKDVGKLVSDFTKMRTMMQQM 430          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: WP_035986250.1 (signal recognition particle protein [Leptolyngbya sp. KIOST-1])

HSP 1 Score: 464.2 bits (1193), Expect = 6.100e-127
Identity = 248/439 (56.49%), Postives = 322/439 (73.35%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRM 497
            M + +++ L  A KSL GQ  ISE+NIDGALR+V+RALL+ADVNL+V    +  VKE ALG++V KGV+PDQ+FIK++ DELV LMG   + L  A   PTV+L+AGLQG GKTTA AKLAL+ +     T      L+VA D+YRPAA+DQL TLG++I V VF +GTDA+P+DIAR+G+EKA+A+G  TVIVDTAGR  ID K+M E+  +KTA+ P EVLLVVDAMTGQEAA +T  F+D+IG+TGAILTK+DGD RGGAALSVR +SG+PIKFIGVGE +E L+PFYPDRMASRILGMGDV+TLVEKAQ+ ++  DA  + +K++   FDFDDF+ Q R +  MGSL  +MK+IPGM   + G+ + +GE +L   + MIN M  EERK P +L  +P    R +RI + SG   ++      +F+ +R MM +M
Sbjct:    1 MFEALSDRLESAWKSLRGQDKISESNIDGALREVRRALLEADVNLQVIKDFIAQVKENALGIEVVKGVSPDQQFIKVVNDELVRLMGDTNAPLADAPTKPTVVLMAGLQGTGKTTATAKLALHLRKENRST------LLVATDVYRPAAVDQLITLGKQIDVPVFELGTDANPVDIARQGVEKARADGVDTVIVDTAGRLQIDPKMMAELADIKTAIDPDEVLLVVDAMTGQEAANLTRTFHDQIGITGAILTKMDGDARGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEAVDIADAEKLTQKILEAEFDFDDFLKQMRFMKSMGSLGSIMKLIPGMGKQISGEMLEQGEVQLKRCEAMINSMTTEERKHPNLLSSSPS---RRRRIAKGSGHQEKDVGKLVSDFTKMRTMMQQM 430          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: WP_073607117.1 (signal recognition particle protein [Phormidium tenue] >OKH49877.1 signal recognition particle protein [Phormidium tenue NIES-30])

HSP 1 Score: 464.2 bits (1193), Expect = 6.100e-127
Identity = 247/439 (56.26%), Postives = 321/439 (73.12%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRM 497
            M + +++ L  A KSL GQ  ISE+NID ALR+V+RALL+ADVNL+V    +  VKE ALG++V KGV+PDQ+FIK++ DEL+ LMG   + L  +   PTV+L+AGLQG GKTTA AKLAL+ +     T      L+VA D+YRPAAIDQL TLG++I V VF +GTDA+P+ IAR+G+EKAKA+G  TVIVDTAGR  ID K+M E+  +KTA+ P EVLLVVDAMTGQEAA +T  F+D+IG+TGAILTK+DGD RGGAALSVR +SG+PIKFIGVGE +E L+PFYPDRMASRILGMGDV+TLVEKAQ+ ++  DA  + +K++   FDFDDF+ Q R +  MGSL G+MK+IPGM   + GD + +GE +L   + MIN M  +ERK P +L  +P    R +RI + SG   ++      +F+ +R MM +M
Sbjct:    1 MFEALSDRLESAWKSLRGQDKISESNIDSALREVRRALLEADVNLQVIKDFIAQVKENALGIEVVKGVSPDQQFIKVVNDELIRLMGDTNAPLADSPTKPTVVLMAGLQGTGKTTATAKLALHLRKENRST------LLVATDVYRPAAIDQLVTLGKQIDVPVFELGTDANPVGIARQGIEKAKADGIDTVIVDTAGRLQIDPKMMAELADIKTAIDPDEVLLVVDAMTGQEAANLTRTFHDQIGITGAILTKMDGDARGGAALSVRQISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEAVDLGDAEKLTQKILEAEFDFDDFLKQMRFMKSMGSLGGIMKLIPGMGKQITGDMLEQGEAQLKRCEAMINSMTTQERKQPNLLSSSPS---RRRRIAKGSGHQEKDVGKLVSDFTKMRTMMQQM 430          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: WP_106170752.1 (signal recognition particle protein [filamentous cyanobacterium CCP2] >PSB22494.1 signal recognition particle protein [filamentous cyanobacterium CCP2])

HSP 1 Score: 461.8 bits (1187), Expect = 3.000e-126
Identity = 243/439 (55.35%), Postives = 321/439 (73.12%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRM 497
            M + + + +  A K L GQ  ISE+NI  ALR+V+RALL+AD NL+V    +  V++KA G +V  GV P Q+FIKI++DELV +MG     +      PT++L+AGLQG GKTTA AKLAL+ + +          L+VA D+YRPAAIDQL TLG++I V VF MG+DA+P++IAR+G+EKAKA+G  TVI+DTAGR  IDE +M E+  +K  VKPHEVLLVVDAMTGQEAA +T  F+++IG+TGAILTK+DGDTRGGAALSVR +SG+PIKFIGVGE +E L+PFYPDRMASRILGMGDV+TLVEKAQ+E++ ++A  +  K++T  FDF DF+ QTR++  MGSLSG+MK+IPGM G L  D + +GE++L   + MIN M PEER+DP +L    GS  R KRI   SG  +++     ++F  +R +M +M
Sbjct:    1 MFEALADRMESAWKKLRGQDKISESNIQEALREVRRALLEADANLQVVKDFVAEVQKKAQGEEVISGVNPGQQFIKIVHDELVAVMGETNVPMAHVDTAPTIVLMAGLQGTGKTTATAKLALHLRKQD------RNCLLVATDVYRPAAIDQLITLGKQIDVPVFDMGSDANPVEIARQGVEKAKADGIDTVIIDTAGRLQIDESMMAELAQIKDTVKPHEVLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDTRGGAALSVRRISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEEVDLEEAEKLQEKILTAKFDFTDFLKQTRLMKNMGSLSGIMKLIPGMGGKLSDDQLQKGEEQLKRVEAMINSMTPEERRDPDLL---SGSPSRRKRIARGSGYGLDDVSKLVKDFQKMRSLMQQM 430          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: WP_081914739.1 (signal recognition particle protein [[Leptolyngbya] sp. JSC-1])

HSP 1 Score: 460.3 bits (1183), Expect = 8.800e-126
Identity = 247/439 (56.26%), Postives = 319/439 (72.67%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRM 497
            M + + + L GA K L GQ  ISEANI  ALR+V+RALL+AD NL+V    +  V+ +ALG +V  GV P Q+FIKI+YDELV +MG     L QA  PPT++L+AGLQG GKTTA AKLAL+ +     T      L+VA D+YRPAAIDQL TLG++I V VF +G DA+P++IAR+G+EKAKA+G  TVI+DTAGR  IDE +M E+  +K AV+PHEVLLVVDAMTGQEAA +T  F+++IG+TGAILTK+DGDTRGGAALSVR +SG+PIKFIGVGE +E L+PFYPDRMASRILGMGDV+TLVEKAQ+E++  +A  +  K++T  FDF DF+ Q R++  MGSL+G+MK+IPGM   +  + + +GE +L   + MIN M   ERKDP +L    GS  R KRI   SG S+E+      +F  +R +M +M
Sbjct:    1 MFEALADRLEGAWKKLRGQDKISEANIQEALREVRRALLEADANLQVVKDFVADVQTRALGAEVITGVNPGQQFIKIVYDELVAVMGDTNVPLAQADTPPTIVLMAGLQGTGKTTATAKLALHLRKLDRST------LLVATDVYRPAAIDQLVTLGKQIDVPVFELGKDANPVEIARQGVEKAKADGIDTVIIDTAGRLQIDESMMAELAQIKKAVQPHEVLLVVDAMTGQEAANLTRTFHEQIGITGAILTKMDGDTRGGAALSVRRISGQPIKFIGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEEVDIAEAEKLQEKILTAKFDFTDFVKQLRLMKNMGSLAGIMKLIPGMGNKISDEQLQQGEAQLKRTEAMINSMTMAERKDPDLL---AGSPSRRKRIARGSGYSLEDVSKLVSDFQKMRTLMQQM 430          
BLAST of NO15G03290 vs. NCBI_GenBank
Match: WP_010467673.1 (signal recognition particle protein [Acaryochloris sp. CCMEE 5410])

HSP 1 Score: 459.9 bits (1182), Expect = 1.200e-125
Identity = 248/454 (54.63%), Postives = 329/454 (72.47%), Query Frame = 0
Query:   58 MMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRMSNKLSEKTGFDPSKG 512
            M + +++ L  A K+L GQ  ISE+NI  AL++V+RALL+ADVNL+V    ++ V+E ALG +V  GV PDQ+FIKI++D+LV++MGA    L +++KPPTVIL+AGLQG GKTTA AKLAL+ + + + +      L+VA DIYRPAAIDQL TLGE+I V VF +GTDA+P++IAR+GL  A+ +   TVIVDTAGR  ID ++M E+  +K A+KP E LLVVDAMTGQEAA +T  F+D+IG+TGAILTK+DGDTRGGAALS+R +SGKPIKF+GVGE +E L+PFYPDRMASRILGMGDV+TLVEKAQ+E +  DA  + +K+M   FDF DF+ Q R++  MGSL G+MK+IPGM G +    + EGE KL   + MIN M  EERK+P++L ++P    R +RI + SG +  +      EF  +R MM +M     +  G  P+ G
Sbjct:    1 MFEALSDRLESAWKTLRGQTKISESNIQDALKEVRRALLEADVNLQVVKDFVEDVRESALGAEVITGVQPDQQFIKIVHDQLVEIMGATNEPLAESNKPPTVILMAGLQGTGKTTATAKLALHLRKQEQTS------LLVATDIYRPAAIDQLVTLGEQIDVPVFQLGTDANPVEIARQGLAAAREQNVDTVIVDTAGRLQIDPEMMSELADIKKAIKPDETLLVVDAMTGQEAANLTQTFHDQIGITGAILTKMDGDTRGGAALSIRQISGKPIKFVGVGEKVEALQPFYPDRMASRILGMGDVLTLVEKAQEEFDIADAEKMQKKIMEAQFDFTDFLKQMRLLKNMGSLGGVMKLIPGM-GKISNSQLQEGETKLQQTEAMINSMTKEERKNPQLLSNSPS---RRRRIAKGSGYTQNDVGKLVTEFQRMRSMMQQMGQ--GQMPGMSPAGG 442          
The following BLAST results are available for this feature:
BLAST of NO15G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005717012.14.500e-13057.50signal recognition particle SRP54 homolog ffh [Cho... [more]
XP_002287312.14.200e-12855.33signal recognition particle 54 kDA subunit [Thalas... [more]
WP_106920888.17.200e-12856.72signal recognition particle protein [filamentous c... [more]
WP_106866821.11.200e-12756.72MULTISPECIES: signal recognition particle protein ... [more]
WP_017299489.14.700e-12756.49signal recognition particle protein [Nodosilinea n... [more]
WP_035986250.16.100e-12756.49signal recognition particle protein [Leptolyngbya ... [more]
WP_073607117.16.100e-12756.26signal recognition particle protein [Phormidium te... [more]
WP_106170752.13.000e-12655.35signal recognition particle protein [filamentous c... [more]
WP_081914739.18.800e-12656.26signal recognition particle protein [[Leptolyngbya... [more]
WP_010467673.11.200e-12554.63signal recognition particle protein [Acaryochloris... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03290.1NO15G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588278gene_4893Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100504g1gene8176Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03290.1NO15G03290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03290 ID=NO15G03290|Name=NO15G03290|organism=Nannochloropsis oceanica|type=gene|length=4087bp
ATGCCACGCCATCATACGATCCCCGTCTTCCTGGCATGCTGCCTCGTCCT
CCTTGCGCCCCTGTGCGCCTTTCTAATTCCACCTCCGGCATTGTCAATGG
CTGGGCATAAGGGTTCCATGACCGCCGTGTCCACCATCAGCCCTCGgtac
gtgtatgtctgaatgacacgtccgcgcctccatactccctcgcactctag
ttccagtgcccgtttgcctccctcccaccctcctccctctactccgatgc
ttgtatattattttgccacatcagcaattctatctttttggttcattgca
ccgaccggccatcccccttgtcgcctcgtcctcatcctatcatcctcgct
ccctctcttcttgtcagACGCAGCAAGGGCGTGGCCTACGCCATGATGGA
CGGCATCACTAACGGCCTTATCGGTGCCCTCAAGTCCCTGGCAGGACAAA
AGACCATTTCCGAGGCCAATATTGgtacgccttgtcttctactgcgtccc
tttttccttgttgccaaatcacacctgcttcttcaccccttccctccctc
cctccctctctccctccctcgccgcaacccacttgcctagATGGCGCCCT
CCGGGATGTCAAGCGGGCCCTCCTCGACGCCGACGTGAACTTGAAGGTGA
CCAACGCGTTGCTGGATGCCGTGAAGGAGAAGGCGCTCGgtaggcaggga
gggacggagggactagggcacggaaggcgggttggagggaaggaagggaa
gggaggagggaagtcaggtgtgattttcgagcgcagtctttcatttcgac
atgagtgttgtcgtttgtcttgtcctttgtcttgccctccagtagtgtgg
tgtagtctagtgtcatgcctctgtagtgtagtctagtctcatccctctgt
agtgccattcaatgcaggcatttacgcgggcatcggtcgagcccacactc
ccccttccttccttccctccctccctccctccttctctccctccctcgcc
cagGCATGGACGTGACAAAGGGCGTGACGCCGGACCAGGAATTCATCAAA
ATCATGTACGACGAGCTCGTGGATCTCATGGGCGCCGAGCAGTCCGAACT
GATCCAGgtaggttgccctacgtgtcttccctccctccctccctccctcc
ctccctcccttttcatcttgccccttatgtgcgaattcggactgcacctg
tctccctccctcccccctcccactctcccttcctccctccctccctcagG
CGAGCAAACCGCCCACCGTCATCCTCCTGGCTGGTCTGCAAGGGGCGGGC
AAGACCACCGCTGCCGCCAAGCTCGCGCTCTACTGCCAGTCCCGCGCCGA
AAAAACCGAGGCCTTCGAGAAGgttcgatccatccttttcatttttcctc
cctccctccctccctccctccctttctccacataccgttccccccccgcc
caccccattttttccctccctccctccttccgtccttctccaccccctct
cacagGTCCTGATGGTGGCCGCGGACATCTACCGGCCAGCAGCTATCGAC
CAGCTCCGAACGCTGGGGGAAAAGATCGGAGTGGAAGTCTTTTCCATGGG
CACGGACGCGGACCCCATCGgtggggagggagggagggagggagggaggg
agggagggagggaccactggatcatgctagtctttacttacgaccaaact
cccttcctccctcgcttcctccctcgcttcctccctcctcccctccctca
gACATCGCGCGGAAGGGCCTCGAGAAGGCCAAGGCGGAGGGCTTCACCAC
CGTCATCGTCGACACGGCAGGCCGTCAGGTCATCGACGAGAAACTCATGA
AGGAGATCAAGgtacctccctcattccctccctccctcctcccccctccc
ttcctccccctctggtttaccttcagcgtggcctctcccacttacccacg
cgcgcctccctccctccctccctccctccctatagGGCGTAAAAACTGCG
GTGAAGCCCCACGAGGTGCTGCTGGTGGTAGACGCCATGACGGGCCAGGA
GGCCGCCACAGTCACAGCGCGCTTCAACGACGAGATCGGCCTGACAGgtt
cgggcgctccctccctccctcccgccctcccccctaccctcccaccctcc
cccctccctccctcccgccctccctcccgtacatacaccatcccgatcct
caaccaccctccgcacctccctccctccctccctcagGCGCCATCCTGAC
GAAGCTTGACGGCGACACCCGAGGCGGGGCTGCTCTGTCTGTAAGGGGAG
TGAGTGGGAAGCCGATCAAATTCATCGGCGTGGGCGAGACGTTGGAGAAG
CTCGAACCAgtacgtccctccctcccgccctccctccctccctccctctc
tgctttgtctttgtttgtgtctgtgcatgactcggtgccgccgcgggcac
tcacccccctctccctccctccctccctcagTTCTATCCCGACCGTATGG
CCAGTCGCATCCTGGGCATGGGAGATGTGGTGACCCTCGTCGAGAAGGCT
CAAGACGAGATCAACCAAGACGACGCCATGGCCATCTTCAGGAAGgtcag
gcacccctccctccctccctccctccctccctccctccctcccttctcat
acgtcttgtctccaaggaaaaggaatcgattccctccctccctccctccc
tccctccctagATGATGACGGGAACCTTCGACTTCGATGACTTTATGACT
CAAACCCGCATGATCTCCAGGATGGGTAGCCTCTCAGgtatctgccctcc
ctccctccctccctccctccctccctcgcggtggaaggcatctcatcagg
tgactacctctccagaacctcatccccctccccccccctctccctccctc
ccgcccgcccgccctccctcccttcctccagGCATGATGAAAATGATACC
CGGCATGGCTGGGGTCCTGCCAGGTGACGCTATGTACGAGGGCGAGAAGA
AGCTGTTCGCGTATCAGGAGATGATCAACGTGATGGAGCCCGAGGAGAGG
AAAGACCCCAAGATGCTCCTCGACAATCCAGgtgtgtaggtctgtctagg
gcgcgcccctccctccctccttccctccctcccttcctcccttcttcctc
cccttcataagcaaacgagagggttgagtgacgagtccctccctccctcc
ctccctccctccctccctccctccctccttcccttcctctctccctcatc
ttctttgtccgccaggggacgatatcgtggatgacagcagtcgcgccaag
aacacaacctcactctccctccctccctccctccctccctccctcagGCT
CCGACCTTCGATGGAAGCGCATCGTGGAGGAGAGTGGCCGCTCCATGGAG
GAGGCCAAGACCTTCCAGCGAGAATTCTCCAACCTCCGCTTGATGATGAC
GAGGATGAGCAATAAACTGAGTGAGAAGACTGGCTTTGATCCGAGCAAGg
tagggagggagggagggagggagggagggagggagggaggagtcgccctg
tccttccgggtcgtctcttcctcggacagctaacccttgtgtccttcatt
ctcttctttttcttctacttcttcttgttcttcttgttcttcttattctt
attcttcttgtcctccttcttcttctcattaattctcttcatcacatttt
tcatctttatccctctctcccttccccctccttccttcttcgctcttccc
catggctcccacagGGAAAGGATGCCGTCATCGACGAGTCGGCGTTGCAA
GAGCTCGACATGCGAAACCTGGCCATGATGAGCCAGAATAGgtaggcatt
acgccctcctgcccttacttccccctcccacactccaccacatgactcac
tgacttgccgcgtttggaccttcccatcgtcggtacttcgtaccacccca
tcacccacagACAAGCCCGGCGGAAGCTCGAGAAGCAGGCCCGGCAGTCA
GGCGGCGGCGACGATGACGCCCCGCAAAAGGGCTTTGGAGGAGGAGGAGG
TAGTGGTGGGGGGGGCAAGAAGAAGAAAAAGCGATAA
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protein sequence of NO15G03290.1

>NO15G03290.1-protein ID=NO15G03290.1-protein|Name=NO15G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MPRHHTIPVFLACCLVLLAPLCAFLIPPPALSMAGHKGSMTAVSTISPRR
SKGVAYAMMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADV
NLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSEL
IQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAAD
IYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVI
VDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFND
EIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPD
RMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTR
MISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERK
DPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRMSNKL
SEKTGFDPSKGKDAVIDESALQELDMRNLAMMSQNRQARRKLEKQARQSG
GGDDDAPQKGFGGGGGSGGGGKKKKKR*
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Synonyms
Publications