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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr15 | genome | chr15:959703..963789 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G03290.1 vs.
Match: XP_005717012.1 (signal recognition particle SRP54 homolog ffh [Chondrus crispus]; CDF37193.1 signal recognition particle SRP54 homolog ffh [Chondrus crispus]) HSP 1 Score: 471.9 bits (1213), Expect = 2.900e-129 Identity = 265/491 (53.97%), Postives = 339/491 (69.04%), Query Frame = 0
Query: 73 LAGQKTISEANIDGALRDVKRALLDADVNLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSELIQASK-PPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAADIYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVIVDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFNDEIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPDRMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTRMISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERKDPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRMSNKLSEKTGFDPSKGKDAVIDESALQELDMRNLAMMSQNRQARRKLEKQARQSGGGDDDAPQKGFG 563
+ G I+E N+ GA++DVKRALLDADVNL+V NALL +K +A+G DVT GV P Q +KIM++EL +MG+ Q+ L + PTV+LLAGLQGAGKTTAAAKLALYC V+M+AAD+YRPAAIDQL+TLG+ I V+VF MGTD +P +I RKGL++ K T+IVDTAGRQVID KLMKE+K +K+ K E LLVVDAMTGQEAAT+T FNDE+G+TGAILTKLDGDTRGGAALSV+ VSG PIKFIGVGE ++KLEPFYP+RMASRILGMGDV+T+VEKAQD +++ +A + RKMM FDF+DF+ QT+M+S+MGSL G+MKM+PG+ G + + E E KL +I M +ER +P++L P S R +RI SGRS+ +AK +F +R MM RMS ++ P++G A S+NR RR+ K+ GG ++GFG
Sbjct: 1 MRGVDKITEKNVTGAMKDVKRALLDADVNLRVVNALLKQIKARAVGADVTPGVEPGQMLVKIMHEELTKIMGSNQAPLANRTDGEPTVVLLAGLQGAGKTTAAAKLALYCLKEERS------VMMIAADVYRPAAIDQLKTLGKSIEVDVFQMGTDVNPREIVRKGLQEGKTRKINTIIVDTAGRQVIDAKLMKELKDIKSVSKADETLLVVDAMTGQEAATLTRSFNDEVGITGAILTKLDGDTRGGAALSVQQVSGSPIKFIGVGEKVQKLEPFYPERMASRILGMGDVLTIVEKAQDVMDEAEAEKMTRKMMENKFDFNDFLKQTKMLSQMGSLGGLMKMMPGIGGQINESKLKEAEVKLKVADSIIKSMTKQERGNPELLYTAPSSRSRVERIANGSGRSLAQAKNMISDFQKMRTMMQRMSKQMVGGPDGTPAEG------------------APGSKNRAQRRRNAKKKALRGG-----ERRGFG 462
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G03290.1 ID=NO15G03290.1|Name=NO15G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp ATGCCACGCCATCATACGATCCCCGTCTTCCTGGCATGCTGCCTCGTCCT CCTTGCGCCCCTGTGCGCCTTTCTAATTCCACCTCCGGCATTGTCAATGG CTGGGCATAAGGGTTCCATGACCGCCGTGTCCACCATCAGCCCTCGACGC AGCAAGGGCGTGGCCTACGCCATGATGGACGGCATCACTAACGGCCTTAT CGGTGCCCTCAAGTCCCTGGCAGGACAAAAGACCATTTCCGAGGCCAATA TTGATGGCGCCCTCCGGGATGTCAAGCGGGCCCTCCTCGACGCCGACGTG AACTTGAAGGTGACCAACGCGTTGCTGGATGCCGTGAAGGAGAAGGCGCT CGGCATGGACGTGACAAAGGGCGTGACGCCGGACCAGGAATTCATCAAAA TCATGTACGACGAGCTCGTGGATCTCATGGGCGCCGAGCAGTCCGAACTG ATCCAGGCGAGCAAACCGCCCACCGTCATCCTCCTGGCTGGTCTGCAAGG GGCGGGCAAGACCACCGCTGCCGCCAAGCTCGCGCTCTACTGCCAGTCCC GCGCCGAAAAAACCGAGGCCTTCGAGAAGGTCCTGATGGTGGCCGCGGAC ATCTACCGGCCAGCAGCTATCGACCAGCTCCGAACGCTGGGGGAAAAGAT CGGAGTGGAAGTCTTTTCCATGGGCACGGACGCGGACCCCATCGACATCG CGCGGAAGGGCCTCGAGAAGGCCAAGGCGGAGGGCTTCACCACCGTCATC GTCGACACGGCAGGCCGTCAGGTCATCGACGAGAAACTCATGAAGGAGAT CAAGGGCGTAAAAACTGCGGTGAAGCCCCACGAGGTGCTGCTGGTGGTAG ACGCCATGACGGGCCAGGAGGCCGCCACAGTCACAGCGCGCTTCAACGAC GAGATCGGCCTGACAGGCGCCATCCTGACGAAGCTTGACGGCGACACCCG AGGCGGGGCTGCTCTGTCTGTAAGGGGAGTGAGTGGGAAGCCGATCAAAT TCATCGGCGTGGGCGAGACGTTGGAGAAGCTCGAACCATTCTATCCCGAC CGTATGGCCAGTCGCATCCTGGGCATGGGAGATGTGGTGACCCTCGTCGA GAAGGCTCAAGACGAGATCAACCAAGACGACGCCATGGCCATCTTCAGGA AGATGATGACGGGAACCTTCGACTTCGATGACTTTATGACTCAAACCCGC ATGATCTCCAGGATGGGTAGCCTCTCAGGCATGATGAAAATGATACCCGG CATGGCTGGGGTCCTGCCAGGTGACGCTATGTACGAGGGCGAGAAGAAGC TGTTCGCGTATCAGGAGATGATCAACGTGATGGAGCCCGAGGAGAGGAAA GACCCCAAGATGCTCCTCGACAATCCAGGCTCCGACCTTCGATGGAAGCG CATCGTGGAGGAGAGTGGCCGCTCCATGGAGGAGGCCAAGACCTTCCAGC GAGAATTCTCCAACCTCCGCTTGATGATGACGAGGATGAGCAATAAACTG AGTGAGAAGACTGGCTTTGATCCGAGCAAGGGAAAGGATGCCGTCATCGA CGAGTCGGCGTTGCAAGAGCTCGACATGCGAAACCTGGCCATGATGAGCC AGAATAGACAAGCCCGGCGGAAGCTCGAGAAGCAGGCCCGGCAGTCAGGC GGCGGCGACGATGACGCCCCGCAAAAGGGCTTTGGAGGAGGAGGAGGTAG TGGTGGGGGGGGCAAGAAGAAGAAAAAGCGATAA back to topprotein sequence of NO15G03290.1 >NO15G03290.1-protein ID=NO15G03290.1-protein|Name=NO15G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp MPRHHTIPVFLACCLVLLAPLCAFLIPPPALSMAGHKGSMTAVSTISPRR SKGVAYAMMDGITNGLIGALKSLAGQKTISEANIDGALRDVKRALLDADV NLKVTNALLDAVKEKALGMDVTKGVTPDQEFIKIMYDELVDLMGAEQSEL IQASKPPTVILLAGLQGAGKTTAAAKLALYCQSRAEKTEAFEKVLMVAAD IYRPAAIDQLRTLGEKIGVEVFSMGTDADPIDIARKGLEKAKAEGFTTVI VDTAGRQVIDEKLMKEIKGVKTAVKPHEVLLVVDAMTGQEAATVTARFND EIGLTGAILTKLDGDTRGGAALSVRGVSGKPIKFIGVGETLEKLEPFYPD RMASRILGMGDVVTLVEKAQDEINQDDAMAIFRKMMTGTFDFDDFMTQTR MISRMGSLSGMMKMIPGMAGVLPGDAMYEGEKKLFAYQEMINVMEPEERK DPKMLLDNPGSDLRWKRIVEESGRSMEEAKTFQREFSNLRLMMTRMSNKL SEKTGFDPSKGKDAVIDESALQELDMRNLAMMSQNRQARRKLEKQARQSG GGDDDAPQKGFGGGGGSGGGGKKKKKR* back to topmRNA from alignment at chr15:959703..963789- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G03290.1 ID=NO15G03290.1|Name=NO15G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=4087bp|location=Sequence derived from alignment at chr15:959703..963789- (Nannochloropsis oceanica) ATGCCACGCCATCATACGATCCCCGTCTTCCTGGCATGCTGCCTCGTCCT
CCTTGCGCCCCTGTGCGCCTTTCTAATTCCACCTCCGGCATTGTCAATGG
CTGGGCATAAGGGTTCCATGACCGCCGTGTCCACCATCAGCCCTCGGTAC
GTGTATGTCTGAATGACACGTCCGCGCCTCCATACTCCCTCGCACTCTAG
TTCCAGTGCCCGTTTGCCTCCCTCCCACCCTCCTCCCTCTACTCCGATGC
TTGTATATTATTTTGCCACATCAGCAATTCTATCTTTTTGGTTCATTGCA
CCGACCGGCCATCCCCCTTGTCGCCTCGTCCTCATCCTATCATCCTCGCT
CCCTCTCTTCTTGTCAGACGCAGCAAGGGCGTGGCCTACGCCATGATGGA
CGGCATCACTAACGGCCTTATCGGTGCCCTCAAGTCCCTGGCAGGACAAA
AGACCATTTCCGAGGCCAATATTGGTACGCCTTGTCTTCTACTGCGTCCC
TTTTTCCTTGTTGCCAAATCACACCTGCTTCTTCACCCCTTCCCTCCCTC
CCTCCCTCTCTCCCTCCCTCGCCGCAACCCACTTGCCTAGATGGCGCCCT
CCGGGATGTCAAGCGGGCCCTCCTCGACGCCGACGTGAACTTGAAGGTGA
CCAACGCGTTGCTGGATGCCGTGAAGGAGAAGGCGCTCGGTAGGCAGGGA
GGGACGGAGGGACTAGGGCACGGAAGGCGGGTTGGAGGGAAGGAAGGGAA
GGGAGGAGGGAAGTCAGGTGTGATTTTCGAGCGCAGTCTTTCATTTCGAC
ATGAGTGTTGTCGTTTGTCTTGTCCTTTGTCTTGCCCTCCAGTAGTGTGG
TGTAGTCTAGTGTCATGCCTCTGTAGTGTAGTCTAGTCTCATCCCTCTGT
AGTGCCATTCAATGCAGGCATTTACGCGGGCATCGGTCGAGCCCACACTC
CCCCTTCCTTCCTTCCCTCCCTCCCTCCCTCCTTCTCTCCCTCCCTCGCC
CAGGCATGGACGTGACAAAGGGCGTGACGCCGGACCAGGAATTCATCAAA
ATCATGTACGACGAGCTCGTGGATCTCATGGGCGCCGAGCAGTCCGAACT
GATCCAGGTAGGTTGCCCTACGTGTCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTTTCATCTTGCCCCTTATGTGCGAATTCGGACTGCACCTG
TCTCCCTCCCTCCCCCCTCCCACTCTCCCTTCCTCCCTCCCTCCCTCAGG
CGAGCAAACCGCCCACCGTCATCCTCCTGGCTGGTCTGCAAGGGGCGGGC
AAGACCACCGCTGCCGCCAAGCTCGCGCTCTACTGCCAGTCCCGCGCCGA
AAAAACCGAGGCCTTCGAGAAGGTTCGATCCATCCTTTTCATTTTTCCTC
CCTCCCTCCCTCCCTCCCTCCCTTTCTCCACATACCGTTCCCCCCCCGCC
CACCCCATTTTTTCCCTCCCTCCCTCCTTCCGTCCTTCTCCACCCCCTCT
CACAGGTCCTGATGGTGGCCGCGGACATCTACCGGCCAGCAGCTATCGAC
CAGCTCCGAACGCTGGGGGAAAAGATCGGAGTGGAAGTCTTTTCCATGGG
CACGGACGCGGACCCCATCGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGACCACTGGATCATGCTAGTCTTTACTTACGACCAAACT
CCCTTCCTCCCTCGCTTCCTCCCTCGCTTCCTCCCTCCTCCCCTCCCTCA
GACATCGCGCGGAAGGGCCTCGAGAAGGCCAAGGCGGAGGGCTTCACCAC
CGTCATCGTCGACACGGCAGGCCGTCAGGTCATCGACGAGAAACTCATGA
AGGAGATCAAGGTACCTCCCTCATTCCCTCCCTCCCTCCTCCCCCCTCCC
TTCCTCCCCCTCTGGTTTACCTTCAGCGTGGCCTCTCCCACTTACCCACG
CGCGCCTCCCTCCCTCCCTCCCTCCCTCCCTATAGGGCGTAAAAACTGCG
GTGAAGCCCCACGAGGTGCTGCTGGTGGTAGACGCCATGACGGGCCAGGA
GGCCGCCACAGTCACAGCGCGCTTCAACGACGAGATCGGCCTGACAGGTT
CGGGCGCTCCCTCCCTCCCTCCCGCCCTCCCCCCTACCCTCCCACCCTCC
CCCCTCCCTCCCTCCCGCCCTCCCTCCCGTACATACACCATCCCGATCCT
CAACCACCCTCCGCACCTCCCTCCCTCCCTCCCTCAGGCGCCATCCTGAC
GAAGCTTGACGGCGACACCCGAGGCGGGGCTGCTCTGTCTGTAAGGGGAG
TGAGTGGGAAGCCGATCAAATTCATCGGCGTGGGCGAGACGTTGGAGAAG
CTCGAACCAGTACGTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCCTCTC
TGCTTTGTCTTTGTTTGTGTCTGTGCATGACTCGGTGCCGCCGCGGGCAC
TCACCCCCCTCTCCCTCCCTCCCTCCCTCAGTTCTATCCCGACCGTATGG
CCAGTCGCATCCTGGGCATGGGAGATGTGGTGACCCTCGTCGAGAAGGCT
CAAGACGAGATCAACCAAGACGACGCCATGGCCATCTTCAGGAAGGTCAG
GCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTCAT
ACGTCTTGTCTCCAAGGAAAAGGAATCGATTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTAGATGATGACGGGAACCTTCGACTTCGATGACTTTATGACT
CAAACCCGCATGATCTCCAGGATGGGTAGCCTCTCAGGTATCTGCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCGCGGTGGAAGGCATCTCATCAGG
TGACTACCTCTCCAGAACCTCATCCCCCTCCCCCCCCCTCTCCCTCCCTC
CCGCCCGCCCGCCCTCCCTCCCTTCCTCCAGGCATGATGAAAATGATACC
CGGCATGGCTGGGGTCCTGCCAGGTGACGCTATGTACGAGGGCGAGAAGA
AGCTGTTCGCGTATCAGGAGATGATCAACGTGATGGAGCCCGAGGAGAGG
AAAGACCCCAAGATGCTCCTCGACAATCCAGGTGTGTAGGTCTGTCTAGG
GCGCGCCCCTCCCTCCCTCCTTCCCTCCCTCCCTTCCTCCCTTCTTCCTC
CCCTTCATAAGCAAACGAGAGGGTTGAGTGACGAGTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTTCCTCTCTCCCTCATC
TTCTTTGTCCGCCAGGGGACGATATCGTGGATGACAGCAGTCGCGCCAAG
AACACAACCTCACTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCT
CCGACCTTCGATGGAAGCGCATCGTGGAGGAGAGTGGCCGCTCCATGGAG
GAGGCCAAGACCTTCCAGCGAGAATTCTCCAACCTCCGCTTGATGATGAC
GAGGATGAGCAATAAACTGAGTGAGAAGACTGGCTTTGATCCGAGCAAGG
TAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGTCGCCCTG
TCCTTCCGGGTCGTCTCTTCCTCGGACAGCTAACCCTTGTGTCCTTCATT
CTCTTCTTTTTCTTCTACTTCTTCTTGTTCTTCTTGTTCTTCTTATTCTT
ATTCTTCTTGTCCTCCTTCTTCTTCTCATTAATTCTCTTCATCACATTTT
TCATCTTTATCCCTCTCTCCCTTCCCCCTCCTTCCTTCTTCGCTCTTCCC
CATGGCTCCCACAGGGAAAGGATGCCGTCATCGACGAGTCGGCGTTGCAA
GAGCTCGACATGCGAAACCTGGCCATGATGAGCCAGAATAGGTAGGCATT
ACGCCCTCCTGCCCTTACTTCCCCCTCCCACACTCCACCACATGACTCAC
TGACTTGCCGCGTTTGGACCTTCCCATCGTCGGTACTTCGTACCACCCCA
TCACCCACAGACAAGCCCGGCGGAAGCTCGAGAAGCAGGCCCGGCAGTCA
GGCGGCGGCGACGATGACGCCCCGCAAAAGGGCTTTGGAGGAGGAGGAGG
TAGTGGTGGGGGGGGCAAGAAGAAGAAAAAGCGATAA back to topCoding sequence (CDS) from alignment at chr15:959703..963789- >NO15G03290.1 ID=NO15G03290.1|Name=NO15G03290.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr15:959703..963789- (Nannochloropsis oceanica) ATGCCACGCCATCATACGATCCCCGTCTTCCTGGCATGCTGCCTCGTCCT CCTTGCGCCCCTGTGCGCCTTTCTAATTCCACCTCCGGCATTGTCAATGG CTGGGCATAAGGGTTCCATGACCGCCGTGTCCACCATCAGCCCTCGACGC AGCAAGGGCGTGGCCTACGCCATGATGGACGGCATCACTAACGGCCTTAT CGGTGCCCTCAAGTCCCTGGCAGGACAAAAGACCATTTCCGAGGCCAATA TTGATGGCGCCCTCCGGGATGTCAAGCGGGCCCTCCTCGACGCCGACGTG AACTTGAAGGTGACCAACGCGTTGCTGGATGCCGTGAAGGAGAAGGCGCT CGGCATGGACGTGACAAAGGGCGTGACGCCGGACCAGGAATTCATCAAAA TCATGTACGACGAGCTCGTGGATCTCATGGGCGCCGAGCAGTCCGAACTG ATCCAGGCGAGCAAACCGCCCACCGTCATCCTCCTGGCTGGTCTGCAAGG GGCGGGCAAGACCACCGCTGCCGCCAAGCTCGCGCTCTACTGCCAGTCCC GCGCCGAAAAAACCGAGGCCTTCGAGAAGGTCCTGATGGTGGCCGCGGAC ATCTACCGGCCAGCAGCTATCGACCAGCTCCGAACGCTGGGGGAAAAGAT CGGAGTGGAAGTCTTTTCCATGGGCACGGACGCGGACCCCATCGACATCG CGCGGAAGGGCCTCGAGAAGGCCAAGGCGGAGGGCTTCACCACCGTCATC GTCGACACGGCAGGCCGTCAGGTCATCGACGAGAAACTCATGAAGGAGAT CAAGGGCGTAAAAACTGCGGTGAAGCCCCACGAGGTGCTGCTGGTGGTAG ACGCCATGACGGGCCAGGAGGCCGCCACAGTCACAGCGCGCTTCAACGAC GAGATCGGCCTGACAGGCGCCATCCTGACGAAGCTTGACGGCGACACCCG AGGCGGGGCTGCTCTGTCTGTAAGGGGAGTGAGTGGGAAGCCGATCAAAT TCATCGGCGTGGGCGAGACGTTGGAGAAGCTCGAACCATTCTATCCCGAC CGTATGGCCAGTCGCATCCTGGGCATGGGAGATGTGGTGACCCTCGTCGA GAAGGCTCAAGACGAGATCAACCAAGACGACGCCATGGCCATCTTCAGGA AGATGATGACGGGAACCTTCGACTTCGATGACTTTATGACTCAAACCCGC ATGATCTCCAGGATGGGTAGCCTCTCAGGCATGATGAAAATGATACCCGG CATGGCTGGGGTCCTGCCAGGTGACGCTATGTACGAGGGCGAGAAGAAGC TGTTCGCGTATCAGGAGATGATCAACGTGATGGAGCCCGAGGAGAGGAAA GACCCCAAGATGCTCCTCGACAATCCAGGCTCCGACCTTCGATGGAAGCG CATCGTGGAGGAGAGTGGCCGCTCCATGGAGGAGGCCAAGACCTTCCAGC GAGAATTCTCCAACCTCCGCTTGATGATGACGAGGATGAGCAATAAACTG AGTGAGAAGACTGGCTTTGATCCGAGCAAGGGAAAGGATGCCGTCATCGA CGAGTCGGCGTTGCAAGAGCTCGACATGCGAAACCTGGCCATGATGAGCC AGAATAGACAAGCCCGGCGGAAGCTCGAGAAGCAGGCCCGGCAGTCAGGC GGCGGCGACGATGACGCCCCGCAAAAGGGCTTTGGAGGAGGAGGAGGTAG TGGTGGGGGGGGCAAGAAGAAGAAAAAGCGATAA back to top
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