NO15G03240, NO15G03240 (gene) Nannochloropsis oceanica

Overview
NameNO15G03240
Unique NameNO15G03240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4911
Alignment locationchr15:936696..941606 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:936696..941606 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf
IPR001478PDZ
Homology
[Close]
BLAST of NO15G03240 vs. NCBI_GenBank
Match: EWM22274.1 (hypothetical protein Naga_100960g1 [Nannochloropsis gaditana])

HSP 1 Score: 206.5 bits (524), Expect = 4.000e-49
Identity = 111/210 (52.86%), Postives = 129/210 (61.43%), Query Frame = 0 
Query:    3 TTESTTISRRRLPWAQCHFRGQDLICLGVGNEALIIDGASRLELQRVSN--GCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDDAVVGVAWGDARGVLAALWESGTLAIAENPTATGAWSVVSWFHIRNAEEEYEXXXXXXXXXXXXXXXXXXXXXXXXRGPLIPLDASVTLSWSSHALLLAWGRSLQVFAFYDWHERAMK 211
            T ++TT SR+RLPWAQCHFRGQDLICLGVG++AL++D ASRLELQR+S+  G +                                      D VVGVAWG +RGVLA LW++GTLAIAENPT TGAWSVVSWFHIRN EEE                           G  IP +A+VT+ WS+HALL+AWGRSLQVFAFYDWHERA K
Sbjct:    2 TRKNTTTSRQRLPWAQCHFRGQDLICLGVGSDALLLDSASRLELQRLSSEGGRKKQHLHDQSDVSSAQHGEDESPSAMARNGSISGEDPQGIDLVVGVAWGPSRGVLAVLWDNGTLAIAENPTITGAWSVVSWFHIRNPEEE------------EGREEASETAPRHRGGAFIPPEANVTVRWSNHALLVAWGRSLQVFAFYDWHERAKK 199
[Close]
BLAST of NO15G03240 vs. NCBI_GenBank
Match: EWM22271.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 97.4 bits (241), Expect = 2.600e-16
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0 
Query:  929 MRLEKREDFVHVASFKRHPQTNALLPAEAHAAREREGGREGGIEVGDALVGVNGYSLVGMELEQAVGVMRSVG 1002
            MRLEKRE ++ VASFKRHPQT  LLPAEA      +G  E  I+VGDALV VNGYSLVGM LEQAVGVMRSVG
Sbjct:    1 MRLEKREPYIRVASFKRHPQTGELLPAEA-----SKGENEERIQVGDALVAVNGYSLVGMSLEQAVGVMRSVG 68
The following BLAST results are available for this feature:
BLAST of NO15G03240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22274.14.000e-4952.86hypothetical protein Naga_100960g1 [Nannochloropsi... [more]
EWM22271.12.600e-1672.60conserved unknown protein [Nannochloropsis gaditan... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03240.1NO15G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588250gene_4888Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100960g1gene8168Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03240.1NO15G03240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03240 ID=NO15G03240|Name=NO15G03240|organism=Nannochloropsis oceanica|type=gene|length=4911bp
ACAGGCATCTGACTCTCTAGGTGTGCTTGCGTGACTCATCGCTCACAACT
CAGGCAACCGACGACGATCAGCGACGAAGGCGCAAGCTGGCCGAACGAGA
CACAGGGCCGGATTATCATGAGGAGGCAGGCCGTCGCGGCACCTGCGTTT
TGACCTACGAAATCGTCCACATAAAATACGCACAGCGCAGCGTCATGACA
ACGACGGAGAGTACAACAATAAGCCGACGGCGGCTTCCGTGGGCGCAATG
CCATTTCCGAGGACAGgtgcgtaggaatggaatgcatatggttttgtgaa
gaaggcaccgtcccgaacccccgtgcggtgcttccttctccttcccccat
cccacgatttacactctgctctccccttcttctacatatattcttacgct
gacatgccccatttctctttcccactcttctttcgcatcggttccaaagG
ACTTGATATGCCTGGGTGTGGGCAACGAAGCCCTCATTATTGACGGAGCG
TCGCGCCTGGAACTTCAACGCGTGTCCAATGGATGCGAGAGACGAAAGAA
GCAGCAGCAGCAGCTACAGCAACAGCAGCTGACAGCAGAGGAAGAAGAGG
AGGTGGCCGGGGTCTTAGCAGAGGCGGTGGCTGAGGGAGAAGAAGAGAGG
GATGATGCCGTCGTGGGCGTGGCATGGGGGGACGCGCGCGGCGTTTTGGC
GGCGCTGTGGGAGAGCGGCACTCTGGCTATTGCCGAGAACCCAACCGCGA
CGGGTGCATGGTCTGTGGTGAGCTGGTTTCATATTCGTAACGCCGAGGAG
GAGTACGAGAAGGAGGAGAAGGGTGGCGACGGGGAAAGGCACGGGGCGGA
GAAGGAGAAAGAGAAGGGAAAGAGGAAGAAGAGGGGGCCGCTGATCCCAC
TGGACGCGTCGGTGACGTTGAGCTGGTCCAGCCACGCGCTGCTTCTGGCT
TGGGGTCGCTCTCTTCAGGTTTTTGCCTTCTATGACTGGCACGAGCGGGC
CATGAAGAGTGGTGGAGGGAGCGGGGGAGGAGGAGGAGGAGGAGGAGGCA
GGGGGGCGTTGCGGCGGCTGCTGCATTACCGTCTTCCTCTTCCTCATTTG
ACGGCAGACCTATGCCCGGATGGCAATTTTTTAGCTGTGTCCTACCTCGA
TGAGGAGCAGACGGATGTGCACGTCTGGTCGGTACTCGCTTCCTCCTCCA
CCTCCTCCTCCTCATCTGCCTCCTCCTCCTCCTCCTCCTCCTCTTCATCC
TCCTCCTCCTCCACGCCAGCGTCTTCCTCTTCCACCTTGCCAGCAGgtac
acattattttggttgatctttttgaccatcgtactcctggctcttcatct
gtcttaccacattctgtctcattcacctgcacagACCCCCCTTCCTCCCG
CTCCGCCTCCATGGACGGGACATCTCACCCAAGCCCCGCCACTGCAGCCA
CGGCCAATAGCAGCAGCATCAGCAGCAGCATCACCGACCCCCCCCCGCCT
CCCATTGCGACGTTAGGCCACCGGTCTCCTGCGCATGTGGTTGAATGGCG
GTCGGGCTTGCCTGGGGTCCTGTCCATCCTCATGACGTGCTGTGGAACGg
taagggaccctcccccctccctccctctctttcttcctacctcttatttc
catagtacagctgctgattcttttttttgttcttctccctctattcctcc
cttcctcccttcctccctccctctcacagGACAACCAGCTCCACATCTGG
GCCGAAGCCCGCGCCCTTGCCCCTTCCTCCCTCCCTCCCTCCTTCTCCTC
CAGCACGGATTCTCCCGCCTCCTCTCCCCGGAACACGACGGCTGCCTCCT
CCTCCTCCCTCCTACCTACGACCTTTCATCTCTGGCTGTCTATCCCATCA
TTCGCGCCATTGGGGTCGGCCGTGACGTGGCTCCGGTGGGCCAATTTTGG
GAGCACGCGGGCGTCGCAGgtaagggagggagggagggagggagggaagg
aggaagggagggcaggcagtcgatcgttggattctgttttcattgctcat
ttatacgtcggctttctctccgcgattttctccgaagCACCTCGCTGCCC
GTGTCCGGCAACACGGCCTCGATGACGGCAATAGAGGCGCACTGCTCCTC
AAGACAGTGGCAGgttggtcctccctccctccttccctcccttcctcctt
cgcgtttctccctccctccccccttccctccctttcgtccctcccgccct
tcccatttcagttccccttctttcatttctcacctttcactccatccttc
gcgtcagaccgtcagacccgtcactgtccatggctccctcctcttccact
tttcctccttatcctgggcctttcctctttcgtgtatgactaatcgcccc
atccttcgcgtcagacccgtcaatgtccataacttactccctttcttatc
ctgggcagggtcgccgtttcgtcgttcgaggacggttctccgattcagtc
tattttcaaacactctcactccaccctccatccctccctccctccctccc
tcagGCTCTTGGATTGTGGGAATGGAGGCGACAGGCACGATTAGAATTTG
GTGCATCGTGCACCCGCAGGATTCACAGCCCGGTGACCCTAAGCTGAAGG
AACATgtgaggagggagggagggagggagggagggagggagggagggagg
gagggagggagggagggagggagggagggagggagggagggcgggaggga
gggaaggggaaagcgccgcatatggacgtcatcagatgcaccactcaccc
ttccccttcctcctcccgctctccctccctccttctctccctccctccct
ccctcccttgcctcctctccttcttcctttttcagGCCAGGGTAGTTGAA
GTTGCAGCCCGCGCCTCCTGGCCCAGCTGGACCGCTTCCTCCTTCGGCCC
CTCTCTCTTCAAGGACACTCTCCCTCCCGCCCTCCCTCCCCATGCCATCA
CCCCAGTGAAGGGCAGCACGGCCGTGGTCAACAGAGATGATCCTGTCACT
CCTCTTACCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCATCTGC
CAGGAAGGCGGCGCCTGCCACCCCCCTCGCCCTCCTCGGCCTGGGGCCGC
GTGTAAGCGCCACGGGCTTCTTTGACCCCCGGGGGGTAGGCGTCCCGGCT
GAGATCGgtggggagggagggagggagggagggagggagggagggaagag
agggtagtttggaaggaagaagaataccactgtttttgatgcgctattat
ctcaccattcatgcccccctctcctccctcctttcctccctccttccctc
tagGCATGGTCCTCAAGCCCGACTTCCTCGCTCCCTGCCCCTCCCCCTCC
TCCTCCTCCTCCCCCTCCTCCTCCCTTCCCACGGCCGCGCAGCTTCACCG
TGACTCCCGTCGGCTTCTCCTCACCACCCTCGGCACGTCCCTGGCCCATA
ATGGAGGTCTTCATGTCCATTGCCTCTCAGGCACCGTTCTCGATGCCGCG
CTGGTAGTTCGAGAGgtatttaccccctccctccctccttccctccttcc
ctccttccctccctccttccctccctccttccctcccttctttccctcat
tctatcccgtattgtctccctccgttttccctccctccttccctcctcct
cacctccctttctgactccacccacccttccgcgcctctattacttccct
tcactcgatctacgacagGGTTCCTCCGCCTCCTCCCTCCTCCCTTCCTC
CTCTCCCTCCTCCTCTTCCTGCAGGACAAGCCTCCCCCCCACCTCCACCT
CCCTTCACCCTTTCTCCTCCTTCTCCCCTCCCCTCTTCCACCCCTCCCTC
CCTTTCCTTGTCCGCAAGGCTCCCAATTTCAATGGCGGCCCCGGCGACCC
GCCTGTCCTGAACACTGCCTTCCTCCCCCACCTCGCCCCTCCACTCTACA
CTCTCCCCTCCCTCCCTCAGCCCCTCCCCCTCCCCCTCCCCTCCATCGTT
CTTCCCCGCGGGAAAACGCCGGAACACGTCTTGTGGGTGGTCCATGCCGG
CACCCCGCCCTCCCTCCCGCCCTCCCTCCCACCCTCCCTCTTGGTGTTGG
ACACGACGCGAGGCCTTTATCTCTACACGGCCCAGCGGGCGAGATCCAAG
CTCCCTGTCCCTTCCCTTTTCCCACCCTGCTGGTCTGTCGAAGAAGATGG
AAGAGGGGAAGGGGAAGGAGGTGGAGGAGAAGCAGAAGGAGGGGAGGGAG
AGAGGGAGGGAGTGAGGGAGGGAGGGAAAACATGGATTTCGTTGAGTAGA
CCGGGATCGCCCACGAACATGACCGAGgtgagggagggagggagggaggg
agggagggagggagggaagaagggagggaacgagggagggaggatgaagg
ggaagaagagcatgatgcaaacgacgatgaagacacaacgactgacgact
caccgctgcctccgatccctccctccctttttcccttcctccctcccatc
cacgccccaacagCGCCTCGTGTCCTTCCCGCCCTCCTCCCCCTCCTCCT
CCCTCTCCTCCTACACCGTGTCGCTCCTCCCCGATCCCATCTACGGCCTG
GGCATGCGTCTGGAGAAGAGAGAGGACTTTGTCCACGTGGCCTCTTTCAA
GCGACACCCTCAAACAAACGCCCTCCTCCCCGCGGAAGCGCACGCAGCCA
GGGAGAGGGAGGGAGGGCGGGAGGGTGGGATAGAGGTGGGCGATGCGCTG
GTGGGTGTCAATGGGTATTCCCTTGTGGGGATGGAGCTGGAGCAGGCCGT
AGGGGTGATGAGGAGTGTAGGGGCTGGGAAGGGAGGGAGGGGGGAGGAAT
GGGAGGCGTAG
back to top

protein sequence of NO15G03240.1

>NO15G03240.1-protein ID=NO15G03240.1-protein|Name=NO15G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1014bp
MTTTESTTISRRRLPWAQCHFRGQDLICLGVGNEALIIDGASRLELQRVS
NGCERRKKQQQQLQQQQLTAEEEEEVAGVLAEAVAEGEEERDDAVVGVAW
GDARGVLAALWESGTLAIAENPTATGAWSVVSWFHIRNAEEEYEKEEKGG
DGERHGAEKEKEKGKRKKRGPLIPLDASVTLSWSSHALLLAWGRSLQVFA
FYDWHERAMKSGGGSGGGGGGGGGRGALRRLLHYRLPLPHLTADLCPDGN
FLAVSYLDEEQTDVHVWSVLASSSTSSSSSASSSSSSSSSSSSSSTPASS
SSTLPADPPSSRSASMDGTSHPSPATAATANSSSISSSITDPPPPPIATL
GHRSPAHVVEWRSGLPGVLSILMTCCGTDNQLHIWAEARALAPSSLPPSF
SSSTDSPASSPRNTTAASSSSLLPTTFHLWLSIPSFAPLGSAVTWLRWAN
FGSTRASQHLAARVRQHGLDDGNRGALLLKTVAGSWIVGMEATGTIRIWC
IVHPQDSQPGDPKLKEHARVVEVAARASWPSWTASSFGPSLFKDTLPPAL
PPHAITPVKGSTAVVNRDDPVTPLTTAAAAAAAAAAASARKAAPATPLAL
LGLGPRVSATGFFDPRGVGVPAEIGMVLKPDFLAPCPSPSSSSSPSSSLP
TAAQLHRDSRRLLLTTLGTSLAHNGGLHVHCLSGTVLDAALVVREGSSAS
SLLPSSSPSSSSCRTSLPPTSTSLHPFSSFSPPLFHPSLPFLVRKAPNFN
GGPGDPPVLNTAFLPHLAPPLYTLPSLPQPLPLPLPSIVLPRGKTPEHVL
WVVHAGTPPSLPPSLPPSLLVLDTTRGLYLYTAQRARSKLPVPSLFPPCW
SVEEDGRGEGEGGGGEAEGGEGEREGVREGGKTWISLSRPGSPTNMTERL
VSFPPSSPSSSLSSYTVSLLPDPIYGLGMRLEKREDFVHVASFKRHPQTN
ALLPAEAHAAREREGGREGGIEVGDALVGVNGYSLVGMELEQAVGVMRSV
GAGKGGRGEEWEA*
back to top
Synonyms
Publications