NO15G03070, NO15G03070 (gene) Nannochloropsis oceanica

Overview
NameNO15G03070
Unique NameNO15G03070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1654
Alignment locationchr15:843746..845399 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:843746..845399 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029377TMEM220
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO15G03070 vs. NCBI_GenBank
Match: XP_005854964.1 (hypothetical protein NGA_0386700 [Nannochloropsis gaditana CCMP526] >EKU21391.1 hypothetical protein NGA_0386700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 186.0 bits (471), Expect = 8.300e-44
Identity = 89/141 (63.12%), Postives = 116/141 (82.27%), Query Frame = 0 
Query:    1 MDMIKRVVSFIFLVMFILGTVVQFNDPDPAVWVLYYSSASLLAFMALVGANVRSGSFAHLDKAARSVAILMSLYWIISYFPTVQQDYKNKNGDIMRMVIQKDGNIKMKDEPMELAREFGGACIILMYSLVLYPLSTVAGVK 142
            M+++KR VS +FL MFILGT+VQFNDPDP +WV Y+++A+LL  MAL G N R G F+ +DK AR+ AIL+SLYWI +Y P +++DY+ KNG+I+RMVI +DG+I+MKD+ MELAREFGGA IIL+Y+LVLYPLSTV   K
Sbjct:    1 MEVLKRTVSLLFLAMFILGTLVQFNDPDPIIWVTYWATAALLPLMALTGVNTRHGLFSLVDKLARAAAILVSLYWITTYLPGIKKDYQAKNGNILRMVINQDGDIRMKDDQMELAREFGGAVIILVYTLVLYPLSTVGDEK 141
The following BLAST results are available for this feature:
BLAST of NO15G03070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854964.18.300e-4463.12hypothetical protein NGA_0386700 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001270NSK001270Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G03070.1NO15G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588180gene_4871Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G03070.1NO15G03070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G03070 ID=NO15G03070|Name=NO15G03070|organism=Nannochloropsis oceanica|type=gene|length=1654bp
CGGAGAGGCATGACGATCAGGCAGAGGCACGTTGGGGGTCGTTGCTGGGC
GTTTCGTTTGGCGAGTTGTGTGCGAGCAGCGATGGGAGCTGCTGTGATTC
AGTTCCTAAAATGATACGGGCAGAGTCACTCATTCTCGTCACAAGGGTAT
GGTAGGAGGCGACCTCAAGGGACCTCCCTCTGCCCAGGCAGGCAAACAGC
AGTAGAACGTAGCTCACTTGTGTTCCTTGTTTGGTGCTTCTCGTGCACAC
AAGGACAACAAGCACGTTGTTCGATCTTTGGTTCTGATGCATTCCCTCGT
GCTCAAGAGGTTCTGGCTCTTATGAGTTCAAGTATAAGTCACAGACGCAG
AACTGAAGGTCATCCAGCAAGGCACCTTTTCCCATGCTTGGATTTTTGCT
CTTGCCTCGAGACCCTGGCTCACTCTCCCCTACCTGAAAAATCCGTACAC
ATTGTGCCATACCCCCATCTCTACCTACAGACCACTATTCAACCATGGAC
ATGATCAAGCGTGTCGTCTCTTTTATCTTCCTTGTCATGTTCATCTTGGG
CACGGTCGTCCAGgtaagactcatgttgcatccctccccattcttttttt
ttcttagtcacacgcacacacacaatcctctactttccccctcccgcgtg
ccccacatgtaacacacttctgacaccatgccatttcacttttccttctt
catcagTTCAATGACCCGGATCCCGCAGTGTGGGTGCTCTACTACTCCTC
TGCCTCTCTTTTGGCATTCATGGCACTGGTCGGTGCCAACGTCCGCTCAG
GCTCCTTCGCCCACCTCGATAAAGCCGCGCGGTCGGTAGCAATCCTCATG
TCACTGTACTGGATCATTTCCTACTTTCCTACAGTGCAACAGGATTACAA
AAACAAGAACGGCGATgtacgtcttactttcccatcttcaatccctaagt
ccattccttcatccctccttccctttctcctccttttttaccacatactc
cacatttggttttggctgactggattatgcccgtaatctgccttcgggcc
cacatcttcatgatatttgttgtgtgccgaatgcgtgttgctactttctc
ggatggtgtattgcggtgccccggggcatggttgggggagggcttctata
tgagtagctcgtcgtgtcatcgatcgctgtcgtcggtcgcggtcgactct
tctgactcagacctttccatcttcttagccttgacaaaaagtcactccgc
gtgcttatttccccctctcaccctccccccctttccaccctcgcttcttc
cttctagATAATGCGCATGGTCATCCAGAAAGACGGCAATATTAAGATGA
AGGACGAGCCTATGGAGCTCGCGCGGGAGTTCGGAGGGGCATGCATCATT
TTGATGTATTCGTTGGTGCTGTATCCTTTGTCGACGGTGGCGGGGGTGAA
GGATGGGAAGAGCAAGAAGGCGATGTGAAGGCCCACGGGAGGAATGGAGT
GAGTGAAGGAAGGAGGAATAGGATGATGTTTAAAGGATGTCAATCAGTGT
CTTGATCGTCGCTCTGCTTGGATACATGTTAAGATGTCAGTGTGTCCTTG
TTCGGACGGGGACTTGGGGTGTATCCCGCATGTGTGTGTGTGGGTGGGTG
GGGA
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protein sequence of NO15G03070.1

>NO15G03070.1-protein ID=NO15G03070.1-protein|Name=NO15G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MDMIKRVVSFIFLVMFILGTVVQFNDPDPAVWVLYYSSASLLAFMALVGA
NVRSGSFAHLDKAARSVAILMSLYWIISYFPTVQQDYKNKNGDIMRMVIQ
KDGNIKMKDEPMELAREFGGACIILMYSLVLYPLSTVAGVKDGKSKKAM*
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Synonyms
Publications