NO15G03070.1, NO15G03070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G03070.1
Unique NameNO15G03070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1120
Alignment locationchr15:843746..845399 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:843746..845399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G03070.1 vs.
Match: XP_005854964.1 (hypothetical protein NGA_0386700 [Nannochloropsis gaditana CCMP526]; EKU21391.1 hypothetical protein NGA_0386700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 186.0 bits (471), Expect = 8.300e-44
Identity = 89/141 (63.12%), Postives = 116/141 (82.27%), Query Frame = 0 
Query:    1 MDMIKRVVSFIFLVMFILGTVVQFNDPDPAVWVLYYSSASLLAFMALVGANVRSGSFAHLDKAARSVAILMSLYWIISYFPTVQQDYKNKNGDIMRMVIQKDGNIKMKDEPMELAREFGGACIILMYSLVLYPLSTVAGVK 142
            M+++KR VS +FL MFILGT+VQFNDPDP +WV Y+++A+LL  MAL G N R G F+ +DK AR+ AIL+SLYWI +Y P +++DY+ KNG+I+RMVI +DG+I+MKD+ MELAREFGGA IIL+Y+LVLYPLSTV   K
Sbjct:    1 MEVLKRTVSLLFLAMFILGTLVQFNDPDPIIWVTYWATAALLPLMALTGVNTRHGLFSLVDKLARAAAILVSLYWITTYLPGIKKDYQAKNGNILRMVINQDGDIRMKDDQMELAREFGGAVIILVYTLVLYPLSTVGDEK 141
The following BLAST results are available for this feature:
BLAST of NO15G03070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854964.18.300e-4463.12hypothetical protein NGA_0386700 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G03070NO15G03070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G03070.1NO15G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G03070.1.cds1NO15G03070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03070.1.cds2NO15G03070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G03070.1.cds3NO15G03070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G03070.1 ID=NO15G03070.1|Name=NO15G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1120bp
CGGAGAGGCATGACGATCAGGCAGAGGCACGTTGGGGGTCGTTGCTGGGC
GTTTCGTTTGGCGAGTTGTGTGCGAGCAGCGATGGGAGCTGCTGTGATTC
AGTTCCTAAAATGATACGGGCAGAGTCACTCATTCTCGTCACAAGGGTAT
GGTAGGAGGCGACCTCAAGGGACCTCCCTCTGCCCAGGCAGGCAAACAGC
AGTAGAACGTAGCTCACTTGTGTTCCTTGTTTGGTGCTTCTCGTGCACAC
AAGGACAACAAGCACGTTGTTCGATCTTTGGTTCTGATGCATTCCCTCGT
GCTCAAGAGGTTCTGGCTCTTATGAGTTCAAGTATAAGTCACAGACGCAG
AACTGAAGGTCATCCAGCAAGGCACCTTTTCCCATGCTTGGATTTTTGCT
CTTGCCTCGAGACCCTGGCTCACTCTCCCCTACCTGAAAAATCCGTACAC
ATTGTGCCATACCCCCATCTCTACCTACAGACCACTATTCAACCATGGAC
ATGATCAAGCGTGTCGTCTCTTTTATCTTCCTTGTCATGTTCATCTTGGG
CACGGTCGTCCAGTTCAATGACCCGGATCCCGCAGTGTGGGTGCTCTACT
ACTCCTCTGCCTCTCTTTTGGCATTCATGGCACTGGTCGGTGCCAACGTC
CGCTCAGGCTCCTTCGCCCACCTCGATAAAGCCGCGCGGTCGGTAGCAAT
CCTCATGTCACTGTACTGGATCATTTCCTACTTTCCTACAGTGCAACAGG
ATTACAAAAACAAGAACGGCGATATAATGCGCATGGTCATCCAGAAAGAC
GGCAATATTAAGATGAAGGACGAGCCTATGGAGCTCGCGCGGGAGTTCGG
AGGGGCATGCATCATTTTGATGTATTCGTTGGTGCTGTATCCTTTGTCGA
CGGTGGCGGGGGTGAAGGATGGGAAGAGCAAGAAGGCGATGTGAAGGCCC
ACGGGAGGAATGGAGTGAGTGAAGGAAGGAGGAATAGGATGATGTTTAAA
GGATGTCAATCAGTGTCTTGATCGTCGCTCTGCTTGGATACATGTTAAGA
TGTCAGTGTGTCCTTGTTCGGACGGGGACTTGGGGTGTATCCCGCATGTG
TGTGTGTGGGTGGGTGGGGA
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protein sequence of NO15G03070.1

>NO15G03070.1-protein ID=NO15G03070.1-protein|Name=NO15G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MDMIKRVVSFIFLVMFILGTVVQFNDPDPAVWVLYYSSASLLAFMALVGA
NVRSGSFAHLDKAARSVAILMSLYWIISYFPTVQQDYKNKNGDIMRMVIQ
KDGNIKMKDEPMELAREFGGACIILMYSLVLYPLSTVAGVKDGKSKKAM*
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mRNA from alignment at chr15:843746..845399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G03070.1 ID=NO15G03070.1|Name=NO15G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp|location=Sequence derived from alignment at chr15:843746..845399- (Nannochloropsis oceanica)
CGGAGAGGCATGACGATCAGGCAGAGGCACGTTGGGGGTCGTTGCTGGGC
GTTTCGTTTGGCGAGTTGTGTGCGAGCAGCGATGGGAGCTGCTGTGATTC
AGTTCCTAAAATGATACGGGCAGAGTCACTCATTCTCGTCACAAGGGTAT
GGTAGGAGGCGACCTCAAGGGACCTCCCTCTGCCCAGGCAGGCAAACAGC
AGTAGAACGTAGCTCACTTGTGTTCCTTGTTTGGTGCTTCTCGTGCACAC
AAGGACAACAAGCACGTTGTTCGATCTTTGGTTCTGATGCATTCCCTCGT
GCTCAAGAGGTTCTGGCTCTTATGAGTTCAAGTATAAGTCACAGACGCAG
AACTGAAGGTCATCCAGCAAGGCACCTTTTCCCATGCTTGGATTTTTGCT
CTTGCCTCGAGACCCTGGCTCACTCTCCCCTACCTGAAAAATCCGTACAC
ATTGTGCCATACCCCCATCTCTACCTACAGACCACTATTCAACCATGGAC
ATGATCAAGCGTGTCGTCTCTTTTATCTTCCTTGTCATGTTCATCTTGGG
CACGGTCGTCCAGGTAAGACTCATGTTGCATCCCTCCCCATTCTTTTTTT
TTCTTAGTCACACGCACACACACAATCCTCTACTTTCCCCCTCCCGCGTG
CCCCACATGTAACACACTTCTGACACCATGCCATTTCACTTTTCCTTCTT
CATCAGTTCAATGACCCGGATCCCGCAGTGTGGGTGCTCTACTACTCCTC
TGCCTCTCTTTTGGCATTCATGGCACTGGTCGGTGCCAACGTCCGCTCAG
GCTCCTTCGCCCACCTCGATAAAGCCGCGCGGTCGGTAGCAATCCTCATG
TCACTGTACTGGATCATTTCCTACTTTCCTACAGTGCAACAGGATTACAA
AAACAAGAACGGCGATGTACGTCTTACTTTCCCATCTTCAATCCCTAAGT
CCATTCCTTCATCCCTCCTTCCCTTTCTCCTCCTTTTTTACCACATACTC
CACATTTGGTTTTGGCTGACTGGATTATGCCCGTAATCTGCCTTCGGGCC
CACATCTTCATGATATTTGTTGTGTGCCGAATGCGTGTTGCTACTTTCTC
GGATGGTGTATTGCGGTGCCCCGGGGCATGGTTGGGGGAGGGCTTCTATA
TGAGTAGCTCGTCGTGTCATCGATCGCTGTCGTCGGTCGCGGTCGACTCT
TCTGACTCAGACCTTTCCATCTTCTTAGCCTTGACAAAAAGTCACTCCGC
GTGCTTATTTCCCCCTCTCACCCTCCCCCCCTTTCCACCCTCGCTTCTTC
CTTCTAGATAATGCGCATGGTCATCCAGAAAGACGGCAATATTAAGATGA
AGGACGAGCCTATGGAGCTCGCGCGGGAGTTCGGAGGGGCATGCATCATT
TTGATGTATTCGTTGGTGCTGTATCCTTTGTCGACGGTGGCGGGGGTGAA
GGATGGGAAGAGCAAGAAGGCGATGTGAAGGCCCACGGGAGGAATGGAGT
GAGTGAAGGAAGGAGGAATAGGATGATGTTTAAAGGATGTCAATCAGTGT
CTTGATCGTCGCTCTGCTTGGATACATGTTAAGATGTCAGTGTGTCCTTG
TTCGGACGGGGACTTGGGGTGTATCCCGCATGTGTGTGTGTGGGTGGGTG
GGGA
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Coding sequence (CDS) from alignment at chr15:843746..845399-

>NO15G03070.1 ID=NO15G03070.1|Name=NO15G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at chr15:843746..845399- (Nannochloropsis oceanica)
ATGGACATGATCAAGCGTGTCGTCTCTTTTATCTTCCTTGTCATGTTCAT
CTTGGGCACGGTCGTCCAGTTCAATGACCCGGATCCCGCAGTGTGGGTGC
TCTACTACTCCTCTGCCTCTCTTTTGGCATTCATGGCACTGGTCGGTGCC
AACGTCCGCTCAGGCTCCTTCGCCCACCTCGATAAAGCCGCGCGGTCGGT
AGCAATCCTCATGTCACTGTACTGGATCATTTCCTACTTTCCTACAGTGC
AACAGGATTACAAAAACAAGAACGGCGATATAATGCGCATGGTCATCCAG
AAAGACGGCAATATTAAGATGAAGGACGAGCCTATGGAGCTCGCGCGGGA
GTTCGGAGGGGCATGCATCATTTTGATGTATTCGTTGGTGCTGTATCCTT
TGTCGACGGTGGCGGGGGTGAAGGATGGGAAGAGCAAGAAGGCGATGTGA
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Synonyms
Publications