NO15G02960, NO15G02960 (gene) Nannochloropsis oceanica

Overview
NameNO15G02960
Unique NameNO15G02960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1607
Alignment locationchr15:803164..804770 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:803164..804770 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0070552BRISC complex
GO:0070531BRCA1-A complex
GO:0070552BRISC complex
GO:0070531BRCA1-A complex
Vocabulary: Biological Process
TermDefinition
GO:0045739positive regulation of DNA repair
GO:0045739positive regulation of DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR026126BABAM1
Homology
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BLAST of NO15G02960 vs. NCBI_GenBank
Match: EWM22309.1 (hypothetical protein Naga_100465g2 [Nannochloropsis gaditana])

HSP 1 Score: 138.7 bits (348), Expect = 4.200e-29
Identity = 87/264 (32.95%), Postives = 127/264 (48.11%), Query Frame = 0 
Query:   46 MGQPWSASSPLPTRLDVLKQALTVFLHIKSLLNPRHEFSLVTVDEQESRVVLPFSVALPEIYRTLSNITPVGTWPPAAPAADAVTDPIGATPTANGINLSHLLGNTLPSLLSKYLTHNRDSSYDNPGTPSSSSSQPALARAILFMGTSYALPLLPQPSVVQALFANDSFFFDMMYLHARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSILP-PRIRRSAEIWNACLDLLVDHHPFLPESSYCFSV 309
            M Q W+ SSP  TRLD++K  ++VFL +K+ L  RH+F+LV+VD + S+++LPF+ +L E  R L  ++          +  A T  + +    + ++L+HLLG TLPS                              RAIL MG SY  PLLP+P++V+ LF++D+FF D++Y+HAR                                                  P PR R S++IW ACL+LL D HP LPE+ Y F+V
Sbjct:    1 MSQGWTTSSPFQTRLDIVKHVVSVFLSVKTRLCLRHKFALVSVDGRGSQMLLPFTSSLQEFTRKLETLS----------STTAATSTVDSDTQDDALHLAHLLGETLPSF---XXXXXXXXXXXXXXXXXXXXXXXXXXRAILLMGASYTFPLLPEPALVEDLFSHDNFFLDLLYVHARQPFLPPPGPSLSSSPAITNLKKSKAMPMREEDDDVTVLDSRHGDPAVLSPPTPRRRLSSDIWKACLELLADRHPMLPETGYFFTV 251
The following BLAST results are available for this feature:
BLAST of NO15G02960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22309.14.200e-2932.95hypothetical protein Naga_100465g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001282NSK001282Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02960.1NO15G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588129gene_4858Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100465g2gene8132Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02960.1NO15G02960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02960 ID=NO15G02960|Name=NO15G02960|organism=Nannochloropsis oceanica|type=gene|length=1607bp
AACCCACAGTTCCCACCAACCATGAAGCAGGGTGCAATGCGTGCGGCTCC
TGCAGGAGACCAGCCAGTCCCTTCGGCCGCTGTGGTCCGGCGGCGCCTGA
CCCGTTTCGCCCGTCTGCCCGAGCGCATTGCGTTGTGCATCGATGTGAGC
CCGGAAATGGGACAGCCCTGGTCCGCCTCGTCGCCTTTGCCCACACGCCT
CGATGTCCTTAAGCAAGCCCTCACCGTTTTCTTGCACATCAAATCGCTTT
TAAACCCCCGACATGAGTTTTCCCTTGTCACCGTGGACGAGCAAGAGAGC
CGCGTCGTCCTCCCTTTTTCCGTTGCTTTACCTGAAATCTACCGGACGCT
CAGTAATATAACCCCCGTCGGCACGTGGCCTCCTGCTGCTCCTGCTGCTG
ATGCTGTTACTGATCCTATTGGTGCTACGCCTACTGCCAATGGAATCAAT
TTATCACATCTCCTCGGCAACACCCTCCCATCCTTGCTTTCAAAATACTT
GACACACAACAGAGACAGCAGCTACGACAACCCTGGAACCCCCTCCTCCT
CTTCCTCGCAACCGGCCCTCGCCCGTGCGATTCTCTTCATGGGCACCTCC
TACGCCTTGCCCCTCCTTCCCCAACCCAGTGTCGTCCAAGCACTCTTTGC
CAACGATAGCTTCTTCTTCGACATGATGTACCTACATGCACGTAAGGCTT
CTCCTCCCGTCCCTCTCACTCCTCCTCCCCCTTCTTCCTCCACGACCACC
GATGTGGTGCTAGTGGATTTGGCCGACGACCAAGACGACGTAGCCGTCGT
CCAAGCACCTGCAGCAGCTCAAGCCCTTCCTCCCTCCATTCTTCCTCCGC
GTATTCGCCGCAGCGCCGAGATCTGGAACGCCTGTCTCGATCTGCTCGTT
GACCATCACCCTTTCTTGCCCGAGTCCAGCTACTGCTTCTCAGTCTTgtg
agttacccgtcctcccctccctccctccctcattctttccgctttggctt
ctcctcgcaacattccttttccttcccccccgtacattttgatttcactc
actttaatgcctcccctttctccctccctccctcaggcaccggcccttcc
cgccagttgccgcacgtactccacggcaggagaaagagtgctgtgatctg
tatctcacactgtcataaatccattccttattccctctccccccctctct
cagGCATGGTTCCAGCACTGACAGGGTTTTGACACCGCTGCAGCTGCTGT
TGGCACACCCAGCGCACCGCCTCCCCCAGTCAATGGCCGAGGAGCGATTG
CATTACCACCATCCAGAACCGGAAGCACAGGAAGGAGGAGAAGGAGGGAG
AGGGAAGGGAGGGTGGAGGATGAGGATGATGAACGAAACGAGGGAAGGGA
AGGAGGAAATGGAGTTGGGGGCCCGAGGGGGAAGCATGGAGGGAGCGACA
CCTGTAACTAGAGGTGAAATGAGCGCGCGGGAAACGCTGCCGTTACTCTC
AGACGCGCAGACATAGATGTAAAAATAAATGAAGCGAGAGTATAAATTAG
GGATCGAATTGTCCAGATGCCCACACAGCAATTAAATAGAGGGTGACTGC
CGGGGAA
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protein sequence of NO15G02960.1

>NO15G02960.1-protein ID=NO15G02960.1-protein|Name=NO15G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MKQGAMRAAPAGDQPVPSAAVVRRRLTRFARLPERIALCIDVSPEMGQPW
SASSPLPTRLDVLKQALTVFLHIKSLLNPRHEFSLVTVDEQESRVVLPFS
VALPEIYRTLSNITPVGTWPPAAPAADAVTDPIGATPTANGINLSHLLGN
TLPSLLSKYLTHNRDSSYDNPGTPSSSSSQPALARAILFMGTSYALPLLP
QPSVVQALFANDSFFFDMMYLHARKASPPVPLTPPPPSSSTTTDVVLVDL
ADDQDDVAVVQAPAAAQALPPSILPPRIRRSAEIWNACLDLLVDHHPFLP
ESSYCFSVLHGSSTDRVLTPLQLLLAHPAHRLPQSMAEERLHYHHPEPEA
QEGGEGGRGKGGWRMRMMNETREGKEEMELGARGGSMEGATPVTRGEMSA
RETLPLLSDAQT*
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Synonyms
Publications