NO15G02960.1, NO15G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02960.1
Unique NameNO15G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1351
Alignment locationchr15:803164..804770 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:803164..804770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02960.1 vs.
Match: EWM22309.1 (hypothetical protein Naga_100465g2 [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 5.800e-39
Identity = 101/267 (37.83%), Postives = 158/267 (59.18%), Query Frame = 0 
Query:   46 MGQPWSASSPLPTRLDVLKQALTVFLHIKSLLNPRHEFSLVTVDEQESRVVLPFSVALPEIYRTLSNITPVGTWPPAAPAADAVTDPIGATPTANGINLSHLLGNTLPSLLSKYLTHNRDSSYDNPGTPSSSSSQPALARAILFMGTSYALPLLPQPSVVQALFANDSFFFDMMYLHARK--ASPPVPLTPPPPSSSTTTDVVLVDLADDQDDVAVVQAPAAAQAL--PPSILPPRIRRSAEIWNACLDLLVDHHPFLPESSYCFSV 309
            M Q W+ SSP  TRLD++K  ++VFL +K+ L  RH+F+LV+VD + S+++LPF+ +L E  R L  ++          +  A T  + +    + ++L+HLLG TLPS  S   +  +   ++     ++ S  P L RAIL MG SY  PLLP+P++V+ LF++D+FF D++Y+HAR+    PP P     P+ +       + + ++ DDV V+ +     A+  PP+   PR R S++IW ACL+LL D HP LPE+ Y F+V
Sbjct:    1 MSQGWTTSSPFQTRLDIVKHVVSVFLSVKTRLCLRHKFALVSVDGRGSQMLLPFTSSLQEFTRKLETLS----------STTAATSTVDSDTQDDALHLAHLLGETLPSFFSS--SKKKKEEWEELDA-TTFSCPPPLLRAILLMGASYTFPLLPEPALVEDLFSHDNFFLDLLYVHARQPFLPPPGPSLSSSPAITNLKKSKAMPMREEDDDVTVLDSRHGDPAVLSPPT---PRRRLSSDIWKACLELLADRHPMLPETGYFFTV 251
The following BLAST results are available for this feature:
BLAST of NO15G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22309.15.800e-3937.83hypothetical protein Naga_100465g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02960NO15G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02960.1NO15G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02960.1.cds1NO15G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02960.1.cds2NO15G02960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02960.1 ID=NO15G02960.1|Name=NO15G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp
AACCCACAGTTCCCACCAACCATGAAGCAGGGTGCAATGCGTGCGGCTCC
TGCAGGAGACCAGCCAGTCCCTTCGGCCGCTGTGGTCCGGCGGCGCCTGA
CCCGTTTCGCCCGTCTGCCCGAGCGCATTGCGTTGTGCATCGATGTGAGC
CCGGAAATGGGACAGCCCTGGTCCGCCTCGTCGCCTTTGCCCACACGCCT
CGATGTCCTTAAGCAAGCCCTCACCGTTTTCTTGCACATCAAATCGCTTT
TAAACCCCCGACATGAGTTTTCCCTTGTCACCGTGGACGAGCAAGAGAGC
CGCGTCGTCCTCCCTTTTTCCGTTGCTTTACCTGAAATCTACCGGACGCT
CAGTAATATAACCCCCGTCGGCACGTGGCCTCCTGCTGCTCCTGCTGCTG
ATGCTGTTACTGATCCTATTGGTGCTACGCCTACTGCCAATGGAATCAAT
TTATCACATCTCCTCGGCAACACCCTCCCATCCTTGCTTTCAAAATACTT
GACACACAACAGAGACAGCAGCTACGACAACCCTGGAACCCCCTCCTCCT
CTTCCTCGCAACCGGCCCTCGCCCGTGCGATTCTCTTCATGGGCACCTCC
TACGCCTTGCCCCTCCTTCCCCAACCCAGTGTCGTCCAAGCACTCTTTGC
CAACGATAGCTTCTTCTTCGACATGATGTACCTACATGCACGTAAGGCTT
CTCCTCCCGTCCCTCTCACTCCTCCTCCCCCTTCTTCCTCCACGACCACC
GATGTGGTGCTAGTGGATTTGGCCGACGACCAAGACGACGTAGCCGTCGT
CCAAGCACCTGCAGCAGCTCAAGCCCTTCCTCCCTCCATTCTTCCTCCGC
GTATTCGCCGCAGCGCCGAGATCTGGAACGCCTGTCTCGATCTGCTCGTT
GACCATCACCCTTTCTTGCCCGAGTCCAGCTACTGCTTCTCAGTCTTGCA
TGGTTCCAGCACTGACAGGGTTTTGACACCGCTGCAGCTGCTGTTGGCAC
ACCCAGCGCACCGCCTCCCCCAGTCAATGGCCGAGGAGCGATTGCATTAC
CACCATCCAGAACCGGAAGCACAGGAAGGAGGAGAAGGAGGGAGAGGGAA
GGGAGGGTGGAGGATGAGGATGATGAACGAAACGAGGGAAGGGAAGGAGG
AAATGGAGTTGGGGGCCCGAGGGGGAAGCATGGAGGGAGCGACACCTGTA
ACTAGAGGTGAAATGAGCGCGCGGGAAACGCTGCCGTTACTCTCAGACGC
GCAGACATAGATGTAAAAATAAATGAAGCGAGAGTATAAATTAGGGATCG
AATTGTCCAGATGCCCACACAGCAATTAAATAGAGGGTGACTGCCGGGGA
A
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protein sequence of NO15G02960.1

>NO15G02960.1-protein ID=NO15G02960.1-protein|Name=NO15G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MKQGAMRAAPAGDQPVPSAAVVRRRLTRFARLPERIALCIDVSPEMGQPW
SASSPLPTRLDVLKQALTVFLHIKSLLNPRHEFSLVTVDEQESRVVLPFS
VALPEIYRTLSNITPVGTWPPAAPAADAVTDPIGATPTANGINLSHLLGN
TLPSLLSKYLTHNRDSSYDNPGTPSSSSSQPALARAILFMGTSYALPLLP
QPSVVQALFANDSFFFDMMYLHARKASPPVPLTPPPPSSSTTTDVVLVDL
ADDQDDVAVVQAPAAAQALPPSILPPRIRRSAEIWNACLDLLVDHHPFLP
ESSYCFSVLHGSSTDRVLTPLQLLLAHPAHRLPQSMAEERLHYHHPEPEA
QEGGEGGRGKGGWRMRMMNETREGKEEMELGARGGSMEGATPVTRGEMSA
RETLPLLSDAQT*
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mRNA from alignment at chr15:803164..804770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02960.1 ID=NO15G02960.1|Name=NO15G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1607bp|location=Sequence derived from alignment at chr15:803164..804770- (Nannochloropsis oceanica)
AACCCACAGTTCCCACCAACCATGAAGCAGGGTGCAATGCGTGCGGCTCC
TGCAGGAGACCAGCCAGTCCCTTCGGCCGCTGTGGTCCGGCGGCGCCTGA
CCCGTTTCGCCCGTCTGCCCGAGCGCATTGCGTTGTGCATCGATGTGAGC
CCGGAAATGGGACAGCCCTGGTCCGCCTCGTCGCCTTTGCCCACACGCCT
CGATGTCCTTAAGCAAGCCCTCACCGTTTTCTTGCACATCAAATCGCTTT
TAAACCCCCGACATGAGTTTTCCCTTGTCACCGTGGACGAGCAAGAGAGC
CGCGTCGTCCTCCCTTTTTCCGTTGCTTTACCTGAAATCTACCGGACGCT
CAGTAATATAACCCCCGTCGGCACGTGGCCTCCTGCTGCTCCTGCTGCTG
ATGCTGTTACTGATCCTATTGGTGCTACGCCTACTGCCAATGGAATCAAT
TTATCACATCTCCTCGGCAACACCCTCCCATCCTTGCTTTCAAAATACTT
GACACACAACAGAGACAGCAGCTACGACAACCCTGGAACCCCCTCCTCCT
CTTCCTCGCAACCGGCCCTCGCCCGTGCGATTCTCTTCATGGGCACCTCC
TACGCCTTGCCCCTCCTTCCCCAACCCAGTGTCGTCCAAGCACTCTTTGC
CAACGATAGCTTCTTCTTCGACATGATGTACCTACATGCACGTAAGGCTT
CTCCTCCCGTCCCTCTCACTCCTCCTCCCCCTTCTTCCTCCACGACCACC
GATGTGGTGCTAGTGGATTTGGCCGACGACCAAGACGACGTAGCCGTCGT
CCAAGCACCTGCAGCAGCTCAAGCCCTTCCTCCCTCCATTCTTCCTCCGC
GTATTCGCCGCAGCGCCGAGATCTGGAACGCCTGTCTCGATCTGCTCGTT
GACCATCACCCTTTCTTGCCCGAGTCCAGCTACTGCTTCTCAGTCTTGTG
AGTTACCCGTCCTCCCCTCCCTCCCTCCCTCATTCTTTCCGCTTTGGCTT
CTCCTCGCAACATTCCTTTTCCTTCCCCCCCGTACATTTTGATTTCACTC
ACTTTAATGCCTCCCCTTTCTCCCTCCCTCCCTCAGGCACCGGCCCTTCC
CGCCAGTTGCCGCACGTACTCCACGGCAGGAGAAAGAGTGCTGTGATCTG
TATCTCACACTGTCATAAATCCATTCCTTATTCCCTCTCCCCCCCTCTCT
CAGGCATGGTTCCAGCACTGACAGGGTTTTGACACCGCTGCAGCTGCTGT
TGGCACACCCAGCGCACCGCCTCCCCCAGTCAATGGCCGAGGAGCGATTG
CATTACCACCATCCAGAACCGGAAGCACAGGAAGGAGGAGAAGGAGGGAG
AGGGAAGGGAGGGTGGAGGATGAGGATGATGAACGAAACGAGGGAAGGGA
AGGAGGAAATGGAGTTGGGGGCCCGAGGGGGAAGCATGGAGGGAGCGACA
CCTGTAACTAGAGGTGAAATGAGCGCGCGGGAAACGCTGCCGTTACTCTC
AGACGCGCAGACATAGATGTAAAAATAAATGAAGCGAGAGTATAAATTAG
GGATCGAATTGTCCAGATGCCCACACAGCAATTAAATAGAGGGTGACTGC
CGGGGAA
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Coding sequence (CDS) from alignment at chr15:803164..804770-

>NO15G02960.1 ID=NO15G02960.1|Name=NO15G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr15:803164..804770- (Nannochloropsis oceanica)
ATGAAGCAGGGTGCAATGCGTGCGGCTCCTGCAGGAGACCAGCCAGTCCC
TTCGGCCGCTGTGGTCCGGCGGCGCCTGACCCGTTTCGCCCGTCTGCCCG
AGCGCATTGCGTTGTGCATCGATGTGAGCCCGGAAATGGGACAGCCCTGG
TCCGCCTCGTCGCCTTTGCCCACACGCCTCGATGTCCTTAAGCAAGCCCT
CACCGTTTTCTTGCACATCAAATCGCTTTTAAACCCCCGACATGAGTTTT
CCCTTGTCACCGTGGACGAGCAAGAGAGCCGCGTCGTCCTCCCTTTTTCC
GTTGCTTTACCTGAAATCTACCGGACGCTCAGTAATATAACCCCCGTCGG
CACGTGGCCTCCTGCTGCTCCTGCTGCTGATGCTGTTACTGATCCTATTG
GTGCTACGCCTACTGCCAATGGAATCAATTTATCACATCTCCTCGGCAAC
ACCCTCCCATCCTTGCTTTCAAAATACTTGACACACAACAGAGACAGCAG
CTACGACAACCCTGGAACCCCCTCCTCCTCTTCCTCGCAACCGGCCCTCG
CCCGTGCGATTCTCTTCATGGGCACCTCCTACGCCTTGCCCCTCCTTCCC
CAACCCAGTGTCGTCCAAGCACTCTTTGCCAACGATAGCTTCTTCTTCGA
CATGATGTACCTACATGCACGTAAGGCTTCTCCTCCCGTCCCTCTCACTC
CTCCTCCCCCTTCTTCCTCCACGACCACCGATGTGGTGCTAGTGGATTTG
GCCGACGACCAAGACGACGTAGCCGTCGTCCAAGCACCTGCAGCAGCTCA
AGCCCTTCCTCCCTCCATTCTTCCTCCGCGTATTCGCCGCAGCGCCGAGA
TCTGGAACGCCTGTCTCGATCTGCTCGTTGACCATCACCCTTTCTTGCCC
GAGTCCAGCTACTGCTTCTCAGTCTTGCATGGTTCCAGCACTGACAGGGT
TTTGACACCGCTGCAGCTGCTGTTGGCACACCCAGCGCACCGCCTCCCCC
AGTCAATGGCCGAGGAGCGATTGCATTACCACCATCCAGAACCGGAAGCA
CAGGAAGGAGGAGAAGGAGGGAGAGGGAAGGGAGGGTGGAGGATGAGGAT
GATGAACGAAACGAGGGAAGGGAAGGAGGAAATGGAGTTGGGGGCCCGAG
GGGGAAGCATGGAGGGAGCGACACCTGTAACTAGAGGTGAAATGAGCGCG
CGGGAAACGCTGCCGTTACTCTCAGACGCGCAGACATAG
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Synonyms
Publications