NO15G02950, NO15G02950 (gene) Nannochloropsis oceanica

Overview
NameNO15G02950
Unique NameNO15G02950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length405
Alignment locationchr15:800152..800556 -

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Properties
Property NameValue
DescriptiontRNA-specific adenosine deaminase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:800152..800556 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008251tRNA-specific adenosine deaminase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0002100tRNA wobble adenosine to inosine editing
Vocabulary: INTERPRO
TermDefinition
IPR016193Cytidine_deaminase-like
IPR002125CMP_dCMP_Zn-bd
IPR028883tRNA_aden_deaminase
Homology
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: OHD22510.1 (tRNA-specific adenosine deaminase [Spirochaetes bacterium GWB1_59_5])

HSP 1 Score: 114.4 bits (285), Expect = 2.800e-22
Identity = 56/98 (57.14%), Postives = 64/98 (65.31%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYEVEGMRGVHDGFWNQDMG 96
            A ++Y   FLR CTLY SAEPC MCAGAIYWSGI R+VYAL E  L+ I     +  T DLPCREVF RG   + VEGP +V G   VH+GFW    G
Sbjct:   64 ASKAYNRDFLRSCTLYTSAEPCAMCAGAIYWSGIGRVVYALSESALRAITGDDPENPTLDLPCREVFARGQRPVAVEGPADVPGAVEVHEGFWQPTDG 161
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BLAST of NO15G02950 vs. NCBI_GenBank
Match: PKL26738.1 (hypothetical protein CVV47_02100 [Spirochaetae bacterium HGW-Spirochaetae-3])

HSP 1 Score: 113.6 bits (283), Expect = 4.700e-22
Identity = 54/93 (58.06%), Postives = 63/93 (67.74%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYEVEGMRGVHDGFW 91
            A ++Y   FLR CTLY SAEPC MC+GAIYWSGI R+VYAL E  L++I     +  T DLPCREVF RG   + VEGP  V G   VH+GFW
Sbjct:   64 ASKAYDRDFLRSCTLYTSAEPCAMCSGAIYWSGIGRVVYALSERALRDITGDDPENPTLDLPCREVFARGQRTVTVEGPEGVPGASAVHEGFW 156
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: EEQ60701.1 (putative guanine deaminase [Clostridiales bacterium 1_7_47FAA])

HSP 1 Score: 110.9 bits (276), Expect = 3.100e-21
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYE--VEGMRGVHDGFWN 92
            A Q Y++ FL+ CTLY +AEPC MCAGAIYW+GI R+VY + E +L        +  TFDLPCREVF RG  E++V GP+   VE + GVH+G+WN
Sbjct:   69 ASQQYSKEFLKDCTLYTTAEPCAMCAGAIYWAGIGRVVYGMSEKDLLAHTGADPQNPTFDLPCREVFARGQKEIEVVGPFPELVEEIAGVHEGYWN 164
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: WP_025484426.1 (MULTISPECIES: nucleoside deaminase [unclassified Clostridiales (miscellaneous)])

HSP 1 Score: 110.9 bits (276), Expect = 3.100e-21
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYE--VEGMRGVHDGFWN 92
            A Q Y++ FL+ CTLY +AEPC MCAGAIYW+GI R+VY + E +L        +  TFDLPCREVF RG  E++V GP+   VE + GVH+G+WN
Sbjct:   65 ASQQYSKEFLKDCTLYTTAEPCAMCAGAIYWAGIGRVVYGMSEKDLLAHTGADPQNPTFDLPCREVFARGQKEIEVVGPFPELVEEIAGVHEGYWN 160
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: PKL07992.1 (nucleoside deaminase [Spirochaetae bacterium HGW-Spirochaetae-7])

HSP 1 Score: 109.0 bits (271), Expect = 1.200e-20
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYEVEGMRGVHDGFW 91
            A + +  AFL  CTLY SAEPC MC+GAIYWSGI R+VYAL E  L++I     +  T DLPCR+VF RG   + V+GP +  G   VH+GFW
Sbjct:   65 ASRKFDRAFLSGCTLYTSAEPCAMCSGAIYWSGIGRVVYALSESRLRQITGDDPENPTLDLPCRDVFARGQRPIAVDGPIDTPGAAEVHEGFW 157
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: WP_024737153.1 (nucleoside deaminase [Clostridiales bacterium VE202-15])

HSP 1 Score: 106.7 bits (265), Expect = 5.800e-20
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYE--VEGMRGVHDGFWN 92
            A Q Y+  FL+ CTLY +AEPC MCAGAIYW+GI R+VY + E EL        +  TFDLPCREVF RG  E++V GP+   VE +  VH G+WN
Sbjct:   65 ASQLYSREFLKDCTLYTTAEPCAMCAGAIYWAGIGRVVYGMTEKELLAQTGADPQNPTFDLPCREVFARGQKEIEVVGPFPELVEEIAEVHKGYWN 160
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: WP_007709001.1 (nucleoside deaminase [[Clostridium] asparagiforme] >EEG56235.1 cytidine and deoxycytidylate deaminase zinc-binding region [[Clostridium asparagiforme] DSM 15981])

HSP 1 Score: 105.1 bits (261), Expect = 1.700e-19
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYE--VEGMRGVHDGFWN 92
            A Q Y+  FL+ CTLY +AEPC MCAGAIYW+GI R+VY + E EL        +  TFDLPCREVF RG  E++V GP+   V+ +  VH G+WN
Sbjct:   65 ASQLYSREFLKDCTLYTTAEPCAMCAGAIYWAGIGRVVYGMTEKELLAQTGADPQNPTFDLPCREVFARGQKEIEVVGPFPELVKEIAEVHKGYWN 160
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: WP_038282228.1 (nucleoside deaminase [[Clostridium] celerecrescens] >KEZ89523.1 CMP deaminase [ [[Clostridium] celerecrescens])

HSP 1 Score: 105.1 bits (261), Expect = 1.700e-19
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYE--VEGMRGVHDGFWN 92
            A Q Y++ FL  CTLY +AEPC MCAGAIYW+GI R+VY + E +L E      +  TFDLPCREVF RG  +++V GP+   VE +  VH G+WN
Sbjct:   65 ASQLYSKDFLGECTLYTTAEPCAMCAGAIYWAGIGRVVYGMTEKDLLEHTGADPQNPTFDLPCREVFARGQKKIEVVGPFPELVEEIAEVHKGYWN 160
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: WP_089991283.1 (nucleoside deaminase [Clostridium sp. C105KSO15] >CUX59007.1 Guanine deaminase [Clostridium sp. C105KSO15])

HSP 1 Score: 105.1 bits (261), Expect = 1.700e-19
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYE--VEGMRGVHDGFWN 92
            A Q Y++ FL  CTLY +AEPC MCAGAIYW+GI R+VY + E +L E      +  TFDLPCREVF RG  +++V GP+   VE +  VH G+WN
Sbjct:   65 ASQLYSKDFLGECTLYTTAEPCAMCAGAIYWAGIGRVVYGMTEKDLLEHTGADPQNPTFDLPCREVFARGQKKIEVVGPFPELVEEIAEVHKGYWN 160
[Close]
BLAST of NO15G02950 vs. NCBI_GenBank
Match: WP_013270786.1 (nucleoside deaminase [[Clostridium] saccharolyticum] >ADL02686.1 CMP/dCMP deaminase zinc-binding protein [[Clostridium] saccharolyticum WM1])

HSP 1 Score: 104.4 bits (259), Expect = 2.900e-19
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIAKG----ATFDLPCREVFERGTLEMKVEGPYE--VEGMRGVHDGFWN 92
            A Q Y++ FL  CTLY +AEPC MCAGAIYW+GI R+VY + E +L     G     TFDLPCREVF RG  +++V GP+   VE +  VH G+WN
Sbjct:   65 ASQLYSKDFLSDCTLYTTAEPCAMCAGAIYWAGIGRVVYGMSEKDLLSHTGGDPQNPTFDLPCREVFARGQKKIEVVGPFPELVEEIAEVHKGYWN 160
The following BLAST results are available for this feature:
BLAST of NO15G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OHD22510.12.800e-2257.14tRNA-specific adenosine deaminase [Spirochaetes ba... [more]
PKL26738.14.700e-2258.06hypothetical protein CVV47_02100 [Spirochaetae bac... [more]
EEQ60701.13.100e-2154.17putative guanine deaminase [Clostridiales bacteriu... [more]
WP_025484426.13.100e-2154.17MULTISPECIES: nucleoside deaminase [unclassified C... [more]
PKL07992.11.200e-2053.76nucleoside deaminase [Spirochaetae bacterium HGW-S... [more]
WP_024737153.15.800e-2054.17nucleoside deaminase [Clostridiales bacterium VE20... [more]
WP_007709001.11.700e-1953.13nucleoside deaminase [[Clostridium] asparagiforme]... [more]
WP_038282228.11.700e-1953.13nucleoside deaminase [[Clostridium] celerecrescens... [more]
WP_089991283.11.700e-1953.13nucleoside deaminase [Clostridium sp. C105KSO15] >... [more]
WP_013270786.12.900e-1953.13nucleoside deaminase [[Clostridium] saccharolyticu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02950.1NO15G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02950.1NO15G02950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02950 ID=NO15G02950|Name=NO15G02950|organism=Nannochloropsis oceanica|type=gene|length=405bp
ATGGCCTGTCAAAGTTACACCGAGGCGTTTCTGCGTCACTGCACTCTCTA
CGTATCCGCCGAGCCCTGCCCGATGTGTGCCGGAGCGATCTATTGGAGCG
GCATTCCGAGGCTAGTGTACGCACTACCTGAATATGAGCTCAAGGAAATT
GCTAAAGGGGCAACATTTGACTTGCCGTGTCGTGAGGTTTTTGAACGTGG
AACGCTGGAGATGAAGGTGGAGGGACCGTATGAGGTGGAGGGGATGAGAG
GGGTACATGACGGGTTTTGGAATCAGGACATGGGTCATATAAATGGACCA
AAGCCGGCAAGGGAGGAAAGGGAGGGAGATGAGGAAGAGGAGGAGGGGAG
AAAGGGATGGATAGGTCGAGGAGGAAGGAGAGGGAAGGAGGAAGGCGATA
TGTAG
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protein sequence of NO15G02950.1

>NO15G02950.1-protein ID=NO15G02950.1-protein|Name=NO15G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEI
AKGATFDLPCREVFERGTLEMKVEGPYEVEGMRGVHDGFWNQDMGHINGP
KPAREEREGDEEEEEGRKGWIGRGGRRGKEEGDM*
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Synonyms
Publications