NO15G02950.1, NO15G02950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02950.1
Unique NameNO15G02950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length405
Alignment locationchr15:800152..800556 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:800152..800556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02950.1 vs.
Match: OHD22510.1 (tRNA-specific adenosine deaminase [Spirochaetes bacterium GWB1_59_5])

HSP 1 Score: 114.0 bits (284), Expect = 3.600e-22
Identity = 56/98 (57.14%), Postives = 64/98 (65.31%), Query Frame = 0 
Query:    2 ACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEIA----KGATFDLPCREVFERGTLEMKVEGPYEVEGMRGVHDGFWNQDMG 96
            A ++Y   FLR CTLY SAEPC MCAGAIYWSGI R+VYAL E  L+ I     +  T DLPCREVF RG   + VEGP +V G   VH+GFW    G
Sbjct:   64 ASKAYNRDFLRSCTLYTSAEPCAMCAGAIYWSGIGRVVYALSESALRAITGDDPENPTLDLPCREVFARGQRPVAVEGPADVPGAVEVHEGFWQPTDG 161
The following BLAST results are available for this feature:
BLAST of NO15G02950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OHD22510.13.600e-2257.14tRNA-specific adenosine deaminase [Spirochaetes ba... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02950NO15G02950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02950.1NO15G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02950.1.cds1NO15G02950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02950.1 ID=NO15G02950.1|Name=NO15G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGGCCTGTCAAAGTTACACCGAGGCGTTTCTGCGTCACTGCACTCTCTA
CGTATCCGCCGAGCCCTGCCCGATGTGTGCCGGAGCGATCTATTGGAGCG
GCATTCCGAGGCTAGTGTACGCACTACCTGAATATGAGCTCAAGGAAATT
GCTAAAGGGGCAACATTTGACTTGCCGTGTCGTGAGGTTTTTGAACGTGG
AACGCTGGAGATGAAGGTGGAGGGACCGTATGAGGTGGAGGGGATGAGAG
GGGTACATGACGGGTTTTGGAATCAGGACATGGGTCATATAAATGGACCA
AAGCCGGCAAGGGAGGAAAGGGAGGGAGATGAGGAAGAGGAGGAGGGGAG
AAAGGGATGGATAGGTCGAGGAGGAAGGAGAGGGAAGGAGGAAGGCGATA
TGTAG
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protein sequence of NO15G02950.1

>NO15G02950.1-protein ID=NO15G02950.1-protein|Name=NO15G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MACQSYTEAFLRHCTLYVSAEPCPMCAGAIYWSGIPRLVYALPEYELKEI
AKGATFDLPCREVFERGTLEMKVEGPYEVEGMRGVHDGFWNQDMGHINGP
KPAREEREGDEEEEEGRKGWIGRGGRRGKEEGDM*
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mRNA from alignment at chr15:800152..800556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02950.1 ID=NO15G02950.1|Name=NO15G02950.1|organism=Nannochloropsis oceanica|type=mRNA|length=405bp|location=Sequence derived from alignment at chr15:800152..800556- (Nannochloropsis oceanica)
ATGGCCTGTCAAAGTTACACCGAGGCGTTTCTGCGTCACTGCACTCTCTA
CGTATCCGCCGAGCCCTGCCCGATGTGTGCCGGAGCGATCTATTGGAGCG
GCATTCCGAGGCTAGTGTACGCACTACCTGAATATGAGCTCAAGGAAATT
GCTAAAGGGGCAACATTTGACTTGCCGTGTCGTGAGGTTTTTGAACGTGG
AACGCTGGAGATGAAGGTGGAGGGACCGTATGAGGTGGAGGGGATGAGAG
GGGTACATGACGGGTTTTGGAATCAGGACATGGGTCATATAAATGGACCA
AAGCCGGCAAGGGAGGAAAGGGAGGGAGATGAGGAAGAGGAGGAGGGGAG
AAAGGGATGGATAGGTCGAGGAGGAAGGAGAGGGAAGGAGGAAGGCGATA
TGTAG
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Coding sequence (CDS) from alignment at chr15:800152..800556-

>NO15G02950.1 ID=NO15G02950.1|Name=NO15G02950.1|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr15:800152..800556- (Nannochloropsis oceanica)
ATGGCCTGTCAAAGTTACACCGAGGCGTTTCTGCGTCACTGCACTCTCTA
CGTATCCGCCGAGCCCTGCCCGATGTGTGCCGGAGCGATCTATTGGAGCG
GCATTCCGAGGCTAGTGTACGCACTACCTGAATATGAGCTCAAGGAAATT
GCTAAAGGGGCAACATTTGACTTGCCGTGTCGTGAGGTTTTTGAACGTGG
AACGCTGGAGATGAAGGTGGAGGGACCGTATGAGGTGGAGGGGATGAGAG
GGGTACATGACGGGTTTTGGAATCAGGACATGGGTCATATAAATGGACCA
AAGCCGGCAAGGGAGGAAAGGGAGGGAGATGAGGAAGAGGAGGAGGGGAG
AAAGGGATGGATAGGTCGAGGAGGAAGGAGAGGGAAGGAGGAAGGCGATA
TGTAG
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Synonyms
Publications