NO15G02890, NO15G02890 (gene) Nannochloropsis oceanica

Overview
NameNO15G02890
Unique NameNO15G02890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1167
Alignment locationchr15:786619..787785 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:786619..787785 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021610DUF3228
Homology
BLAST of NO15G02890 vs. NCBI_GenBank
Match: EWM22327.1 (Protein of unknown function DUF3228 [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 3.000e-76
Identity = 136/166 (81.93%), Postives = 147/166 (88.55%), Query Frame = 0
Query:   42 VDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            VD YLR+ +PPLREGYSSFCYHLIVPNFAHLK SYLKI  ENEHLIR+ YDANSP DLPVLTRYFPA  V+EM GPAKFLD+ILY+R EIH+EN+ARGM HLN  +DAPWGIMRVKAQDV++ELPMLPTTLIRNALG  FGGSGVPLDV RYKESV FWM HAAIR
Sbjct:  102 VDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: CBJ30341.1 (flagellar associated protein [Ectocarpus siliculosus])

HSP 1 Score: 201.8 bits (512), Expect = 2.000e-48
Identity = 96/195 (49.23%), Postives = 135/195 (69.23%), Query Frame = 0
Query:   13 LEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            ++  A+RQFTD  + G K+   P+EFE KV++  R+    L EGY+ FC H+ VPNFA +K S +KI  ENE L+ + Y+A + ++LP+L+R+F +  V      AKFLDIILYSR +I KE  A G     ++++APWGI+ VK+QDVD E+PM P T++RNALG E GGSGVPL+ ++Y +SV FW DHA ++
Sbjct:   61 MDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVAGYEARTAKELPILSRWFESGTVE--TPEAKFLDIILYSREQIRKETAAMGKE--KEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKEEGGSGVPLEREKYMQSVEFWRDHAPVK 251          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: XP_014159943.1 (hypothetical protein SARC_01800 [Sphaeroforma arctica JP610] >KNC86041.1 hypothetical protein SARC_01800 [Sphaeroforma arctica JP610])

HSP 1 Score: 191.0 bits (484), Expect = 3.600e-45
Identity = 92/204 (45.10%), Postives = 130/204 (63.73%), Query Frame = 0
Query:    4 VDSSEKLATLEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            + SS     ++  A+RQF DP + G +I   P EFEAKV+++  S    L++GY+ FC HL +PNF  +K  Y +I  +N  L+++ Y+A S ++LPVL R+F  ++V      A  LDIILYS+ +I KEN A  M +  K   APWGI+ VK Q  D ELPM P T++RNALG + GGSGV L+ ++Y ESV FW +HA+ +
Sbjct:   21 MSSSAHTFVMDDFAMRQFDDPNYTGTRIKFDPSEFEAKVNEFYTSGEATLKDGYAPFCKHLFIPNFCGVKCGYARITADNRSLLQTEYEARSEKELPVLVRFFKTEDV--TAPDATHLDIILYSKEQIIKENEA--MGNPGKIMSAPWGIISVKGQTKDYELPMQPITMLRNALGRDEGGSGVKLEREKYSESVNFWKEHASFK 220          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: OQR88253.1 (hypothetical protein THRCLA_10388 [Thraustotheca clavata])

HSP 1 Score: 191.0 bits (484), Expect = 3.600e-45
Identity = 94/201 (46.77%), Postives = 129/201 (64.18%), Query Frame = 0
Query:    7 SEKLATLEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            ++K   L+   LRQF D  + G +I      FEAK++    S +  L +GY+ FC HL VPNF   K+SY +I   N+HL++S Y A  P +LPVL R+FP++ +   +  AKFLD+ILYSR +I KE+ A G     K  D+PWGI+ +KAQD + ELPM P T++RNALG E GGSGVPL  + Y ++V +W DHA I+
Sbjct:    2 AKKTFALDGFCLRQFDDVSYKGTRIAYDKAAFEAKINDLFDSGACSLVDGYAPFCKHLFVPNFVQAKLSYARITDANKHLLQSDYVARVPTELPVLVRWFPSNSIEPEI--AKFLDVILYSREQICKEHEATGAPFDAKNGDSPWGIISIKAQDAEHELPMNPITVMRNALGKEEGGSGVPLLRENYMQAVKYWKDHAVIQ 200          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: CCI41043.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 190.7 bits (483), Expect = 4.700e-45
Identity = 91/195 (46.67%), Postives = 128/195 (65.64%), Query Frame = 0
Query:   13 LEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            L+P   RQF DP + G +I    KEFE ++++    ++  L +GY+ FC HL V NF   + + +KI   N HL+ S Y+A +  +LPVL R+FP+  V   M  AK+LDIILY+R++I  EN A G A    + +APWGI+ +KAQ+VD ELPM P T++RNALG E GGSGVPL+  +Y +SV FW +HA ++
Sbjct:  253 LDPFCFRQFDDPKYNGTRINFDKKEFEKRINEIYVQHNKKLIDGYAPFCKHLFVENFTDTRTNTVKITQANAHLLMSDYEARAAHELPVLVRWFPSHSVTPSM--AKYLDIILYNRDQIQNENKATGTAMDQTQNEAPWGIISIKAQNVDYELPMTPITMMRNALGKEEGGSGVPLNRNQYIKSVEFWKNHANVK 445          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: OQR84539.1 (hypothetical protein ACHHYP_13269 [Achlya hypogyna])

HSP 1 Score: 189.5 bits (480), Expect = 1.000e-44
Identity = 96/199 (48.24%), Postives = 123/199 (61.81%), Query Frame = 0
Query:    9 KLATLEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            K   L+   LRQF DP + G  I      FEAK+++   + +  L +GY+ FC HL VPNF   K+S   I   N+HL+ S Y A  P +LPVL R+FPA  +   +  A  LDIILYSR +I KE+ A G A      D PWGI+ +KAQDVD ELPM P T++RNALG E GGSGVPL  ++Y E+VA+W  HA I+
Sbjct:   18 KTFALDSFVLRQFDDPSYKGTHIAFDKAAFEAKINELYNAGACSLVDGYAPFCKHLFVPNFVGAKLSAALITDANKHLLESDYVARVPTELPVLVRWFPAGRIEPEV--ASHLDIILYSREQIRKEHEATGHAPDTVNDDCPWGIISIKAQDVDHELPMNPITVLRNALGKEEGGSGVPLSREKYLEAVAYWSTHAVIQ 214          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: EWM27735.1 (Protein of unknown function DUF3228 [Nannochloropsis gaditana])

HSP 1 Score: 187.2 bits (474), Expect = 5.200e-44
Identity = 102/196 (52.04%), Postives = 129/196 (65.82%), Query Frame = 0
Query:   13 LEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETD-APWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            ++   LRQF+       KI L P EFE +V+ Y ++N P L +GY+ FC H+ +PNFA L+     I  EN HL+RS Y+A   ++LPVL RYFP +EV   + PA FLDIILYSR +I KEN    MA+L KE + +PWGI+ VK QDVD ELPM P T++RNALG  +GGSGV LD  +Y  SV FW  HA IR
Sbjct:   55 VDDFCLRQFSQEENYS-KIRLPPSEFEEQVNAYYQAN-PTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEV--ALKPAAFLDIILYSREQIQKEN--EDMANLVKEQNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: XP_008616200.1 (hypothetical protein SDRG_11924 [Saprolegnia diclina VS20] >EQC30347.1 hypothetical protein SDRG_11924 [Saprolegnia diclina VS20])

HSP 1 Score: 186.8 bits (473), Expect = 6.800e-44
Identity = 95/202 (47.03%), Postives = 125/202 (61.88%), Query Frame = 0
Query:    6 SSEKLATLEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            ++ K   L+   LRQF DP + G  I      FEAK+++   + +  L +GY+ FC HL VPNF   K+S   I   N+HL+ + Y A  P +LPVL R+FP+  +      A FLDIILYSR++I KE  A G+   N   D PWGI+ VKAQDV  ELPM P T++RNALG E GGSGVPL  ++Y E+VA+W  HA I+
Sbjct:    4 TTTKTFALDGFCLRQFDDPSYKGTHIAYDKAAFEAKINELYAAGACSLIDGYAPFCKHLFVPNFVGAKLSTALITDVNKHLLETDYVARVPTELPVLARWFPSASLEP--EAASFLDIILYSRDQIRKETAATGLPLDNVNDDVPWGIISVKAQDVAHELPMNPITVLRNALGKEEGGSGVPLSREKYLEAVAYWKTHAVIQ 203          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: CCA21935.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA24785.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 186.4 bits (472), Expect = 8.800e-44
Identity = 90/195 (46.15%), Postives = 125/195 (64.10%), Query Frame = 0
Query:   13 LEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            L+P   RQF D  + G +I     EFE ++++     +  L +GY+ FC HL V NF   + + +KI   N HL+ S Y+A +  +LPVL R+FP+  V   M  AK+LDIILY+R++I  EN A G A    + +APWGI+ +KAQ+VD ELPM P T++RNALG E GGSGVPLD  +Y +SV FW +HA ++
Sbjct:  232 LDPFCFRQFDDAKYNGTRINYDKNEFEKRINEIYVKQNKNLVDGYAPFCKHLFVENFTDTRTNMVKITQANAHLLMSEYEARAAYELPVLVRWFPSHSVTPSM--AKYLDIILYNRDQIQNENKATGTAMDQTQDEAPWGIISIKAQNVDYELPMTPITMMRNALGKEEGGSGVPLDRNKYLKSVEFWKNHANVK 424          
BLAST of NO15G02890 vs. NCBI_GenBank
Match: GAX98312.1 (Hypothetical protein PINS_006189 [Pythium insidiosum])

HSP 1 Score: 184.9 bits (468), Expect = 2.600e-43
Identity = 94/206 (45.63%), Postives = 127/206 (61.65%), Query Frame = 0
Query:    2 AAVDSSEKLATLEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            AA   + +L  L+   LRQF DP ++G +I    +EF  K+++     +  L +GY+ FC HL V  F   +V  + I   N  L++S Y++  P +LPVL R+FP+  V   +  AK+LDIILYSR +I KEN A G        DAPWGI+ +KAQDVD ELPM P TL+RNALG E GGSGVPLD   Y +SV +W +HA ++
Sbjct:  372 AAASPAHEL-VLDRXCLRQFDDPKYLGSQIKXDKEEFVRKINEIYLERNRELVDGYAPFCKHLFVEXFTDTRVPVVPITQSNSRLLQSDYESRVPHELPVLVRWFPSHSVTPKV--AKYLDIILYSREQIRKENAAVGQEDDEAHKDAPWGIISIKAQDVDHELPMNPITLMRNALGKEEGGSGVPLDRDAYLKSVEYWRNHAIVK 574          
The following BLAST results are available for this feature:
BLAST of NO15G02890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22327.13.000e-7681.93Protein of unknown function DUF3228 [Nannochlorops... [more]
CBJ30341.12.000e-4849.23flagellar associated protein [Ectocarpus siliculos... [more]
XP_014159943.13.600e-4545.10hypothetical protein SARC_01800 [Sphaeroforma arct... [more]
OQR88253.13.600e-4546.77hypothetical protein THRCLA_10388 [Thraustotheca c... [more]
CCI41043.14.700e-4546.67unnamed protein product [Albugo candida][more]
OQR84539.11.000e-4448.24hypothetical protein ACHHYP_13269 [Achlya hypogyna... [more]
EWM27735.15.200e-4452.04Protein of unknown function DUF3228 [Nannochlorops... [more]
XP_008616200.16.800e-4447.03hypothetical protein SDRG_11924 [Saprolegnia dicli... [more]
CCA21935.18.800e-4446.15conserved hypothetical protein [Albugo laibachii N... [more]
GAX98312.12.600e-4345.63Hypothetical protein PINS_006189 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001304NSK001304Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02890.1NO15G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100118g23gene8125Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02890.1NO15G02890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02890 ID=NO15G02890|Name=NO15G02890|organism=Nannochloropsis oceanica|type=gene|length=1167bp
ATGGCCGCCGTCGACTCGAGTGAGAAGCTAGCTACCTTGGAGCCCGTTGC
ACTGCGCCAATTCACGGACCCCGGCTTCGTCGGGCCCAAGATTTACTTGC
ACCCGAAGGAGTTCGAGGCCAAGgtacgtctggcgtggtggtgggcgagc
gagggcatgtttttgtggcatacttttgtcgtgtcatgtcccgatgacgt
acacttcttcctctcttcactcccctcctccccttcgtatttctcccaag
acacgcaatgcagagactgtgtggtgtcgttgatgcgtacatgtgcattt
aatgaatttctctgtcctttcatcctctttcgttgtcctctccctttttc
cctccctccctccctcccaacctctcctaccctgcgacagGTCGACAAGT
ACCTCCGCTCCAACTCTCCCCCCTTGCGGGAGGGGTACTCCTCCTTCTGC
TACCACCTTATTGTTCCAAATTTTGCACACCTGAAAGTGTCCTACCTTAA
AATTAAGGTGGAAAATGAGCACTTGATTCGATCGACCTATGATGCCAATA
GCCCGAGgtaaggagggagggagggactgagggagaattataacaggcgt
gaattagatttgagaacaatatgtgcttgtgaagtagatattaccgtgat
acgcgtctcatttatccctctacttctttcattccctccttcgtgtctgt
agAGATCTCCCTGTCCTGACGCGTTACTTCCCTGCCGACGAAGTCAGGGA
AATGATGGGCCCCGCAAAGTTTTTGGACATTATCCTCTACAGCCGCAATG
AGATCCATAAGGAGAATGTGgtgagtcgccttcttttctacctggccttc
ttccctccttccctccatcccgccgtgcactcgtggtggtgcatcctttt
cctgctcttatgtccctcgttaaacgcttactttgccaattcctcctcca
gGCCCGCGGCATGGCCCACTTGAACAAGGAGACGGACGCACCGTGGGGGA
TCATGCGTGTAAAGGCTCAAGACGTCGACAAGGAGCTGCCGATGCTCCCC
ACGACGTTGATACGAAATGCCCTGGGGAATGAATTTGGAGGCTCGGGCGT
TCCTTTGGACGTGAAGAGGTATAAAGAGAGCGTTGCCTTCTGGATGGACC
ATGCCGCCATCCGTTGA
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protein sequence of NO15G02890.1

>NO15G02890.1-protein ID=NO15G02890.1-protein|Name=NO15G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MAAVDSSEKLATLEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNS
PPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLP
VLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAP
WGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFW
MDHAAIR*
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Synonyms
Publications