NO15G02890.1, NO15G02890.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02890.1
Unique NameNO15G02890.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length624
Alignment locationchr15:786619..787785 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:786619..787785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02890.1 vs.
Match: EWM22327.1 (Protein of unknown function DUF3228 [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 3.000e-76
Identity = 136/166 (81.93%), Postives = 147/166 (88.55%), Query Frame = 0 
Query:   42 VDKYLRSNSPPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLPVLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAPWGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFWMDHAAIR 208
            VD YLR+ +PPLREGYSSFCYHLIVPNFAHLK SYLKI  ENEHLIR+ YDANSP DLPVLTRYFPA  V+EM GPAKFLD+ILY+R EIH+EN+ARGM HLN  +DAPWGIMRVKAQDV++ELPMLPTTLIRNALG  FGGSGVPLDV RYKESV FWM HAAIR
Sbjct:  102 VDNYLRTKTPPLREGYSSFCYHLIVPNFAHLKASYLKIVPENEHLIRTAYDANSPEDLPVLTRYFPASAVKEMTGPAKFLDVILYTREEIHQENIARGMEHLNNASDAPWGIMRVKAQDVERELPMLPTTLIRNALGKGFGGSGVPLDVDRYKESVGFWMHHAAIR 267
The following BLAST results are available for this feature:
BLAST of NO15G02890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22327.13.000e-7681.93Protein of unknown function DUF3228 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02890NO15G02890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02890.1NO15G02890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02890.1.cds1NO15G02890.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02890.1.cds2NO15G02890.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02890.1.cds3NO15G02890.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02890.1.cds4NO15G02890.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02890.1 ID=NO15G02890.1|Name=NO15G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
ATGGCCGCCGTCGACTCGAGTGAGAAGCTAGCTACCTTGGAGCCCGTTGC
ACTGCGCCAATTCACGGACCCCGGCTTCGTCGGGCCCAAGATTTACTTGC
ACCCGAAGGAGTTCGAGGCCAAGGTCGACAAGTACCTCCGCTCCAACTCT
CCCCCCTTGCGGGAGGGGTACTCCTCCTTCTGCTACCACCTTATTGTTCC
AAATTTTGCACACCTGAAAGTGTCCTACCTTAAAATTAAGGTGGAAAATG
AGCACTTGATTCGATCGACCTATGATGCCAATAGCCCGAGAGATCTCCCT
GTCCTGACGCGTTACTTCCCTGCCGACGAAGTCAGGGAAATGATGGGCCC
CGCAAAGTTTTTGGACATTATCCTCTACAGCCGCAATGAGATCCATAAGG
AGAATGTGGCCCGCGGCATGGCCCACTTGAACAAGGAGACGGACGCACCG
TGGGGGATCATGCGTGTAAAGGCTCAAGACGTCGACAAGGAGCTGCCGAT
GCTCCCCACGACGTTGATACGAAATGCCCTGGGGAATGAATTTGGAGGCT
CGGGCGTTCCTTTGGACGTGAAGAGGTATAAAGAGAGCGTTGCCTTCTGG
ATGGACCATGCCGCCATCCGTTGA
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protein sequence of NO15G02890.1

>NO15G02890.1-protein ID=NO15G02890.1-protein|Name=NO15G02890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MAAVDSSEKLATLEPVALRQFTDPGFVGPKIYLHPKEFEAKVDKYLRSNS
PPLREGYSSFCYHLIVPNFAHLKVSYLKIKVENEHLIRSTYDANSPRDLP
VLTRYFPADEVREMMGPAKFLDIILYSRNEIHKENVARGMAHLNKETDAP
WGIMRVKAQDVDKELPMLPTTLIRNALGNEFGGSGVPLDVKRYKESVAFW
MDHAAIR*
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mRNA from alignment at chr15:786619..787785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02890.1 ID=NO15G02890.1|Name=NO15G02890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at chr15:786619..787785+ (Nannochloropsis oceanica)
ATGGCCGCCGTCGACTCGAGTGAGAAGCTAGCTACCTTGGAGCCCGTTGC
ACTGCGCCAATTCACGGACCCCGGCTTCGTCGGGCCCAAGATTTACTTGC
ACCCGAAGGAGTTCGAGGCCAAGGTACGTCTGGCGTGGTGGTGGGCGAGC
GAGGGCATGTTTTTGTGGCATACTTTTGTCGTGTCATGTCCCGATGACGT
ACACTTCTTCCTCTCTTCACTCCCCTCCTCCCCTTCGTATTTCTCCCAAG
ACACGCAATGCAGAGACTGTGTGGTGTCGTTGATGCGTACATGTGCATTT
AATGAATTTCTCTGTCCTTTCATCCTCTTTCGTTGTCCTCTCCCTTTTTC
CCTCCCTCCCTCCCTCCCAACCTCTCCTACCCTGCGACAGGTCGACAAGT
ACCTCCGCTCCAACTCTCCCCCCTTGCGGGAGGGGTACTCCTCCTTCTGC
TACCACCTTATTGTTCCAAATTTTGCACACCTGAAAGTGTCCTACCTTAA
AATTAAGGTGGAAAATGAGCACTTGATTCGATCGACCTATGATGCCAATA
GCCCGAGGTAAGGAGGGAGGGAGGGACTGAGGGAGAATTATAACAGGCGT
GAATTAGATTTGAGAACAATATGTGCTTGTGAAGTAGATATTACCGTGAT
ACGCGTCTCATTTATCCCTCTACTTCTTTCATTCCCTCCTTCGTGTCTGT
AGAGATCTCCCTGTCCTGACGCGTTACTTCCCTGCCGACGAAGTCAGGGA
AATGATGGGCCCCGCAAAGTTTTTGGACATTATCCTCTACAGCCGCAATG
AGATCCATAAGGAGAATGTGGTGAGTCGCCTTCTTTTCTACCTGGCCTTC
TTCCCTCCTTCCCTCCATCCCGCCGTGCACTCGTGGTGGTGCATCCTTTT
CCTGCTCTTATGTCCCTCGTTAAACGCTTACTTTGCCAATTCCTCCTCCA
GGCCCGCGGCATGGCCCACTTGAACAAGGAGACGGACGCACCGTGGGGGA
TCATGCGTGTAAAGGCTCAAGACGTCGACAAGGAGCTGCCGATGCTCCCC
ACGACGTTGATACGAAATGCCCTGGGGAATGAATTTGGAGGCTCGGGCGT
TCCTTTGGACGTGAAGAGGTATAAAGAGAGCGTTGCCTTCTGGATGGACC
ATGCCGCCATCCGTTGA
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Coding sequence (CDS) from alignment at chr15:786619..787785+

>NO15G02890.1 ID=NO15G02890.1|Name=NO15G02890.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr15:786619..787785+ (Nannochloropsis oceanica)
ATGGCCGCCGTCGACTCGAGTGAGAAGCTAGCTACCTTGGAGCCCGTTGC
ACTGCGCCAATTCACGGACCCCGGCTTCGTCGGGCCCAAGATTTACTTGC
ACCCGAAGGAGTTCGAGGCCAAGGTCGACAAGTACCTCCGCTCCAACTCT
CCCCCCTTGCGGGAGGGGTACTCCTCCTTCTGCTACCACCTTATTGTTCC
AAATTTTGCACACCTGAAAGTGTCCTACCTTAAAATTAAGGTGGAAAATG
AGCACTTGATTCGATCGACCTATGATGCCAATAGCCCGAGAGATCTCCCT
GTCCTGACGCGTTACTTCCCTGCCGACGAAGTCAGGGAAATGATGGGCCC
CGCAAAGTTTTTGGACATTATCCTCTACAGCCGCAATGAGATCCATAAGG
AGAATGTGGCCCGCGGCATGGCCCACTTGAACAAGGAGACGGACGCACCG
TGGGGGATCATGCGTGTAAAGGCTCAAGACGTCGACAAGGAGCTGCCGAT
GCTCCCCACGACGTTGATACGAAATGCCCTGGGGAATGAATTTGGAGGCT
CGGGCGTTCCTTTGGACGTGAAGAGGTATAAAGAGAGCGTTGCCTTCTGG
ATGGACCATGCCGCCATCCGTTGA
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Synonyms
Publications