NO15G02880, NO15G02880 (gene) Nannochloropsis oceanica

Overview
NameNO15G02880
Unique NameNO15G02880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1330
Alignment locationchr15:784920..786249 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:784920..786249 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR036575TFIIS_cen_dom_sf
IPR003618TFIIS_cen_dom
Homology
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BLAST of NO15G02880 vs. NCBI_GenBank
Match: XP_002292847.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90043.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-7
Identity = 49/167 (29.34%), Postives = 85/167 (50.90%), Query Frame = 0 
Query:  153 SESRVRE----AATEIEEALHDLWKAGNHHEYNNKLRHLVFNLHRNDALRRKVLDGSLPPTKLLSLPIEALRTD----AERDAAKAVEKKEILGYSHSHVFSDVIFEEAAKGVTGMKGGDGEGMGGKCRQCESTKVLFSRRQSYNESSTWCGEEQGVPVMMNCLSCG 312
            +ES V++     A E+E A+ D W  G    YN K+R LVFNL +N  LR +V+ G + P +L+ +  E L+TD    A  D  K++++   L +  ++       E+    + G+KG         C +C+STK   +++Q+ +        ++ + V + CL+CG
Sbjct:  238 NESAVKQLCLSRAGEVEAAV-DTWSRGVKQTYNEKVRTLVFNLKKNGPLRDRVILGQVTPERLVKMTSEELQTDEKAKAIEDTVKSLQESRRLDWDQAN-------EDKINDMCGIKGDLKNASLFTCGRCKSTKTTSTQKQTRS-------ADEPMTVFVLCLNCG 389
The following BLAST results are available for this feature:
BLAST of NO15G02880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002292847.11.600e-729.34predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL146nonsL146Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001305NSK001305Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02880.1NO15G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588100gene_4849Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02880.1NO15G02880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02880 ID=NO15G02880|Name=NO15G02880|organism=Nannochloropsis oceanica|type=gene|length=1330bp
ATGGATCGTCCCGGGAGAGCCAAGCTTGCTTCCCTGCTGAAGAAGCGCCA
ACGCACCGCCTCCTCCGCCTCTGCCTCGTCAAGGAGTAAAAAGGCGGCCG
CTCCAGCCAGCAAGCACTCACCCTCCTCGTCCTTTCCCCCTCCAACAAAT
GCCCGCGCATCGTCCATCTCTTCACCGGACGCCCAGGCTAAAGCGATAGA
TCTCTTAGTCCAAGCGCTGCTCGTGGTGGATGGGGAAAAGACTCTTCGGA
AGAATGGGGCGAGGAAGGGAGCTGAGGTAGCTGGGCAAGGAGACAAGAAG
GAGGGGAAGGAGGCCACCACCACCACGAACACCTCAGCTGGTGCGGCAAT
GGCAGCAGCCGGGAAGAAGAAGAAAACGGAGGACATGAAGAAGGGCGTGA
CAGCTGGCAAAGAGGCGGCTGCTCCTGCTCGTCCTGATGCCTCGGCTTCG
CCCTTTTCAGAAAGCCGGGTGCGGGAGgtgagagtcaattggagtcacca
agggagagtgttgtatgcagcgacgtagatatttgcaatttgtttgtgat
gcctaagcaaaaggtggtttgtctgcaactattcttctgacttatccacc
cacgcgcatacatatgcacaaccacccccagGCGGCGACAGAGATCGAGG
AAGCGTTGCACGACCTGTGGAAGGCGGGGAACCACCACGAGTACAACAAC
AAGTTACGCCACCTTGTCTTCAATTgtacgtttatatatgaacgcaaacg
tatgcattctcatggacctgtcttaacttcaagtgtgtcatgtcctcggc
acgcacgccttcactttttctggttcacggcccgtctaattcctccgtac
aatatttccattttttctgctggtaagaaatttggtattcacattgtcac
ctctttttttcccgtatgctacttttctatcacgcaataaatagTGCACC
GCAATGACGCCCTCCGGAGGAAAGTGCTCGACGGGTCCCTCCCTCCCACC
AAGCTCCTTTCCCTCCCCATCGAAGCACTCCGGACTGACGCCGAACGAGA
TGCAGCCAAGGCCGTGGAAAAGAAAGAGATATTGGGCTACAGTCACTCGC
ATGTCTTTTCTGATGTCATCTTTGAAGAAGCGGCAAAGGGTGTGACGGGG
ATGAAGGGAGGAGATGGAGAAGGGATGGGAGGGAAGTGCCGGCAGTGTGA
GAGTACGAAGGTGCTGTTTTCTCGTCGGCAGTCGTATAATGAGAGTAGTA
CGTGGTGTGGAGAGGAGCAGGGCGTGCCAGTCATGATGAATTGTTTGAGT
TGTGGGACCGTGGAGTCGATAAGGGAATGA
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protein sequence of NO15G02880.1

>NO15G02880.1-protein ID=NO15G02880.1-protein|Name=NO15G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MDRPGRAKLASLLKKRQRTASSASASSRSKKAAAPASKHSPSSSFPPPTN
ARASSISSPDAQAKAIDLLVQALLVVDGEKTLRKNGARKGAEVAGQGDKK
EGKEATTTTNTSAGAAMAAAGKKKKTEDMKKGVTAGKEAAAPARPDASAS
PFSESRVREAATEIEEALHDLWKAGNHHEYNNKLRHLVFNLHRNDALRRK
VLDGSLPPTKLLSLPIEALRTDAERDAAKAVEKKEILGYSHSHVFSDVIF
EEAAKGVTGMKGGDGEGMGGKCRQCESTKVLFSRRQSYNESSTWCGEEQG
VPVMMNCLSCGTVESIRE*
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Synonyms
Publications