NO15G02880.1, NO15G02880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02880.1
Unique NameNO15G02880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length957
Alignment locationchr15:784920..786249 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:784920..786249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02880.1 vs.
Match: XP_002292847.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED90043.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-7
Identity = 49/167 (29.34%), Postives = 85/167 (50.90%), Query Frame = 0 
Query:  153 SESRVREA----ATEIEEALHDLWKAGNHHEYNNKLRHLVFNLHRNDALRRKVLDGSLPPTKLLSLPIEALRTD----AERDAAKAVEKKEILGYSHSHVFSDVIFEEAAKGVTGMKGGDGEGMGGKCRQCESTKVLFSRRQSYNESSTWCGEEQGVPVMMNCLSCG 312
            +ES V++     A E+E A+ D W  G    YN K+R LVFNL +N  LR +V+ G + P +L+ +  E L+TD    A  D  K++++   L +  ++       E+    + G+KG         C +C+STK   +++Q+ +        ++ + V + CL+CG
Sbjct:  238 NESAVKQLCLSRAGEVEAAV-DTWSRGVKQTYNEKVRTLVFNLKKNGPLRDRVILGQVTPERLVKMTSEELQTDEKAKAIEDTVKSLQESRRLDWDQAN-------EDKINDMCGIKGDLKNASLFTCGRCKSTKTTSTQKQTRS-------ADEPMTVFVLCLNCG 389
The following BLAST results are available for this feature:
BLAST of NO15G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002292847.11.600e-729.34predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02880NO15G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02880.1NO15G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02880.1.cds1NO15G02880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02880.1.cds2NO15G02880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02880.1.cds3NO15G02880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02880.1 ID=NO15G02880.1|Name=NO15G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=957bp
ATGGATCGTCCCGGGAGAGCCAAGCTTGCTTCCCTGCTGAAGAAGCGCCA
ACGCACCGCCTCCTCCGCCTCTGCCTCGTCAAGGAGTAAAAAGGCGGCCG
CTCCAGCCAGCAAGCACTCACCCTCCTCGTCCTTTCCCCCTCCAACAAAT
GCCCGCGCATCGTCCATCTCTTCACCGGACGCCCAGGCTAAAGCGATAGA
TCTCTTAGTCCAAGCGCTGCTCGTGGTGGATGGGGAAAAGACTCTTCGGA
AGAATGGGGCGAGGAAGGGAGCTGAGGTAGCTGGGCAAGGAGACAAGAAG
GAGGGGAAGGAGGCCACCACCACCACGAACACCTCAGCTGGTGCGGCAAT
GGCAGCAGCCGGGAAGAAGAAGAAAACGGAGGACATGAAGAAGGGCGTGA
CAGCTGGCAAAGAGGCGGCTGCTCCTGCTCGTCCTGATGCCTCGGCTTCG
CCCTTTTCAGAAAGCCGGGTGCGGGAGGCGGCGACAGAGATCGAGGAAGC
GTTGCACGACCTGTGGAAGGCGGGGAACCACCACGAGTACAACAACAAGT
TACGCCACCTTGTCTTCAATTTGCACCGCAATGACGCCCTCCGGAGGAAA
GTGCTCGACGGGTCCCTCCCTCCCACCAAGCTCCTTTCCCTCCCCATCGA
AGCACTCCGGACTGACGCCGAACGAGATGCAGCCAAGGCCGTGGAAAAGA
AAGAGATATTGGGCTACAGTCACTCGCATGTCTTTTCTGATGTCATCTTT
GAAGAAGCGGCAAAGGGTGTGACGGGGATGAAGGGAGGAGATGGAGAAGG
GATGGGAGGGAAGTGCCGGCAGTGTGAGAGTACGAAGGTGCTGTTTTCTC
GTCGGCAGTCGTATAATGAGAGTAGTACGTGGTGTGGAGAGGAGCAGGGC
GTGCCAGTCATGATGAATTGTTTGAGTTGTGGGACCGTGGAGTCGATAAG
GGAATGA
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protein sequence of NO15G02880.1

>NO15G02880.1-protein ID=NO15G02880.1-protein|Name=NO15G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MDRPGRAKLASLLKKRQRTASSASASSRSKKAAAPASKHSPSSSFPPPTN
ARASSISSPDAQAKAIDLLVQALLVVDGEKTLRKNGARKGAEVAGQGDKK
EGKEATTTTNTSAGAAMAAAGKKKKTEDMKKGVTAGKEAAAPARPDASAS
PFSESRVREAATEIEEALHDLWKAGNHHEYNNKLRHLVFNLHRNDALRRK
VLDGSLPPTKLLSLPIEALRTDAERDAAKAVEKKEILGYSHSHVFSDVIF
EEAAKGVTGMKGGDGEGMGGKCRQCESTKVLFSRRQSYNESSTWCGEEQG
VPVMMNCLSCGTVESIRE*
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mRNA from alignment at chr15:784920..786249+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02880.1 ID=NO15G02880.1|Name=NO15G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp|location=Sequence derived from alignment at chr15:784920..786249+ (Nannochloropsis oceanica)
ATGGATCGTCCCGGGAGAGCCAAGCTTGCTTCCCTGCTGAAGAAGCGCCA
ACGCACCGCCTCCTCCGCCTCTGCCTCGTCAAGGAGTAAAAAGGCGGCCG
CTCCAGCCAGCAAGCACTCACCCTCCTCGTCCTTTCCCCCTCCAACAAAT
GCCCGCGCATCGTCCATCTCTTCACCGGACGCCCAGGCTAAAGCGATAGA
TCTCTTAGTCCAAGCGCTGCTCGTGGTGGATGGGGAAAAGACTCTTCGGA
AGAATGGGGCGAGGAAGGGAGCTGAGGTAGCTGGGCAAGGAGACAAGAAG
GAGGGGAAGGAGGCCACCACCACCACGAACACCTCAGCTGGTGCGGCAAT
GGCAGCAGCCGGGAAGAAGAAGAAAACGGAGGACATGAAGAAGGGCGTGA
CAGCTGGCAAAGAGGCGGCTGCTCCTGCTCGTCCTGATGCCTCGGCTTCG
CCCTTTTCAGAAAGCCGGGTGCGGGAGGTGAGAGTCAATTGGAGTCACCA
AGGGAGAGTGTTGTATGCAGCGACGTAGATATTTGCAATTTGTTTGTGAT
GCCTAAGCAAAAGGTGGTTTGTCTGCAACTATTCTTCTGACTTATCCACC
CACGCGCATACATATGCACAACCACCCCCAGGCGGCGACAGAGATCGAGG
AAGCGTTGCACGACCTGTGGAAGGCGGGGAACCACCACGAGTACAACAAC
AAGTTACGCCACCTTGTCTTCAATTGTACGTTTATATATGAACGCAAACG
TATGCATTCTCATGGACCTGTCTTAACTTCAAGTGTGTCATGTCCTCGGC
ACGCACGCCTTCACTTTTTCTGGTTCACGGCCCGTCTAATTCCTCCGTAC
AATATTTCCATTTTTTCTGCTGGTAAGAAATTTGGTATTCACATTGTCAC
CTCTTTTTTTCCCGTATGCTACTTTTCTATCACGCAATAAATAGTGCACC
GCAATGACGCCCTCCGGAGGAAAGTGCTCGACGGGTCCCTCCCTCCCACC
AAGCTCCTTTCCCTCCCCATCGAAGCACTCCGGACTGACGCCGAACGAGA
TGCAGCCAAGGCCGTGGAAAAGAAAGAGATATTGGGCTACAGTCACTCGC
ATGTCTTTTCTGATGTCATCTTTGAAGAAGCGGCAAAGGGTGTGACGGGG
ATGAAGGGAGGAGATGGAGAAGGGATGGGAGGGAAGTGCCGGCAGTGTGA
GAGTACGAAGGTGCTGTTTTCTCGTCGGCAGTCGTATAATGAGAGTAGTA
CGTGGTGTGGAGAGGAGCAGGGCGTGCCAGTCATGATGAATTGTTTGAGT
TGTGGGACCGTGGAGTCGATAAGGGAATGA
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Coding sequence (CDS) from alignment at chr15:784920..786249+

>NO15G02880.1 ID=NO15G02880.1|Name=NO15G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=957bp|location=Sequence derived from alignment at chr15:784920..786249+ (Nannochloropsis oceanica)
ATGGATCGTCCCGGGAGAGCCAAGCTTGCTTCCCTGCTGAAGAAGCGCCA
ACGCACCGCCTCCTCCGCCTCTGCCTCGTCAAGGAGTAAAAAGGCGGCCG
CTCCAGCCAGCAAGCACTCACCCTCCTCGTCCTTTCCCCCTCCAACAAAT
GCCCGCGCATCGTCCATCTCTTCACCGGACGCCCAGGCTAAAGCGATAGA
TCTCTTAGTCCAAGCGCTGCTCGTGGTGGATGGGGAAAAGACTCTTCGGA
AGAATGGGGCGAGGAAGGGAGCTGAGGTAGCTGGGCAAGGAGACAAGAAG
GAGGGGAAGGAGGCCACCACCACCACGAACACCTCAGCTGGTGCGGCAAT
GGCAGCAGCCGGGAAGAAGAAGAAAACGGAGGACATGAAGAAGGGCGTGA
CAGCTGGCAAAGAGGCGGCTGCTCCTGCTCGTCCTGATGCCTCGGCTTCG
CCCTTTTCAGAAAGCCGGGTGCGGGAGGCGGCGACAGAGATCGAGGAAGC
GTTGCACGACCTGTGGAAGGCGGGGAACCACCACGAGTACAACAACAAGT
TACGCCACCTTGTCTTCAATTTGCACCGCAATGACGCCCTCCGGAGGAAA
GTGCTCGACGGGTCCCTCCCTCCCACCAAGCTCCTTTCCCTCCCCATCGA
AGCACTCCGGACTGACGCCGAACGAGATGCAGCCAAGGCCGTGGAAAAGA
AAGAGATATTGGGCTACAGTCACTCGCATGTCTTTTCTGATGTCATCTTT
GAAGAAGCGGCAAAGGGTGTGACGGGGATGAAGGGAGGAGATGGAGAAGG
GATGGGAGGGAAGTGCCGGCAGTGTGAGAGTACGAAGGTGCTGTTTTCTC
GTCGGCAGTCGTATAATGAGAGTAGTACGTGGTGTGGAGAGGAGCAGGGC
GTGCCAGTCATGATGAATTGTTTGAGTTGTGGGACCGTGGAGTCGATAAG
GGAATGA
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Synonyms
Publications