NO15G02560, NO15G02560 (gene) Nannochloropsis oceanica

Overview
NameNO15G02560
Unique NameNO15G02560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr15:699940..701709 -

Link to JBrowse

Properties
Property NameValue
DescriptionRNA-binding protein NOB1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:699940..701709 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036283NOB1_Zf-like_sf
IPR014881NOB1_Zn-bd
IPR033411Ribonuclease_PIN
Homology
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: XP_005855024.1 (RNA-binding protein NOB1, partial [Nannochloropsis gaditana CCMP526] >EKU21336.1 RNA-binding protein NOB1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 347.4 bits (890), Expect = 8.500e-92
Identity = 198/330 (60.00%), Postives = 223/330 (67.58%), Query Frame = 0 
Query:  263 SWANAVKATAXXXXXXXXXXXXXXXXEAETEGT-PAIPLAIEKLSLSEKEDRFVGNPLTTTRANG-----GEATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRRGCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            SWA AVKATA                    +GT P+IP   + L++ E+  R    P  +    G     G  TSR +GGA                    EGWI+  N+ +VRAKG ES+FG R G G T    GV                 TTDF MQNV+LQMGLRL+S++G AVTRVKQWARRCESCAK+VHDQ+RMFCPRCGNAYLSRVSISVDS TGQLRVHLSKLWRPR GCKYSIPK  KGK  RWEGD+LLREDQLQMGIWQQK+KRRTK L SMFGADITETLGVAV+K+ AA+GIQ+GYGRKNPNSQRGRERRGK+KK
Sbjct:   77 SWAQAVKATA-----SRPPPPAKAMGARRRQGTDPSIP--FQALTM-EETARGGPRPALSRVVEGRAGEHGGVTSRIIGGA--GQEALGLASGTREEVDDEEGWIHTGNLTSVRAKGVESVFGPRGGTGPTQDRDGV------MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 390
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: EWM22320.1 (ribosome biogenesis protein nob1 [Nannochloropsis gaditana])

HSP 1 Score: 316.6 bits (810), Expect = 1.600e-82
Identity = 152/176 (86.36%), Postives = 165/176 (93.75%), Query Frame = 0 
Query:  411 TTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRRGCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            TTDF MQNV+LQMGLRL+S++G AVTRVKQWARRCESCAK+VHDQ+RMFCPRCGNAYLSRVSISVDS TGQLRVHLSKLWRPR GCKYSIPK  KGK  RWEGD+LLREDQLQMGIWQQK+KRRTK L SMFGADITETLGVAV+K+ AA+GIQ+GYGRKNPNSQRGRERRGK+KK
Sbjct:   12 TTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 187
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: CBN76614.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 268.1 bits (684), Expect = 6.600e-68
Identity = 225/582 (38.66%), Postives = 285/582 (48.97%), Query Frame = 0 
Query:   15 DRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVIAEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDLRVLALTYTLEEEHGGDLGHLRKTTV---TRIAIMANDKAPETKKEGEDXXXXXXXXXXXXXXXXXXAGDERVYVEVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKPCFSWANAVKATAXXXXXXXXXXXXXXXXEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGE-ATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKG-------TESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPR-RGCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKK 585
            D+K+ HLV+D+GA+IKG G +LA  AE+FWTIPEV+AE+RD +AR HL++LPFEL+ REP+ +A K  A FARQTGD  +LS+VDL+V+AL Y LE +  G  GHLR   +   T++       +  T     D                  A +E     +AD                                                                  XXXXXXXXXXXXXXXX     SW+   ++        XXXXXXXXXX                 + S              R +G +  TSR +  A                    EGW+N  NIK+ +A G            G+ KG     +    G                TTDF MQNV+LQ+GL LLS+DG+AV RVKQW  RC +C K   +  R+FCP CGNA L RVS SV++ +G  RVHL K  +   RG K+SIP A   K GR+EGD+LLREDQL  GIW QK +R+ K ++SMFG DIT  +G+ VSK+A    +  GYGRKNPNS RGRERRGKK
Sbjct:   73 DQKLTHLVIDSGAIIKGAGMTLASAAENFWTIPEVVAEIRDKKARQHLESLPFELKLREPSDEAMKFAASFARQTGDLRSLSRVDLKVIALAYMLERQETG-AGHLRTAPIRPGTKVNSNRKGVSAPTLAPAND------------------ATEEASAKVLAD--------------------------------------------------------------ATLQXXXXXXXXXXXXXXXXXXXXXSWSLMARSNPAPFKVPXXXXXXXXXXXXXXXXXXXXXXXAGHFTTSGVASPGAAAAADRPRPDGAKPGTSRIMSTA-----AAFGVSGGGADDDDGEGWVNPSNIKSQKAAGIGLNGPSQTQRKGSHKGRSTVASQCRAG--------------CVTTDFAMQNVILQVGLPLLSLDGMAVHRVKQWILRCAACFKTCTEMGRLFCPVCGNATLDRVSCSVNANSGATRVHLRKNHKVNLRGSKFSIPAANPAK-GRFEGDLLLREDQLLSGIWAQKARRKEKDVSSMFGEDITGNVGLTVSKSA---DLVVGYGRKNPNSARGRERRGKK 550
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: GAX92706.1 (Hypothetical protein PINS_000615 [Pythium insidiosum])

HSP 1 Score: 223.0 bits (567), Expect = 2.400e-54
Identity = 197/598 (32.94%), Postives = 266/598 (44.48%), Query Frame = 0 
Query:    1 MAESTPTSSTTLNS---DRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVIAEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDLRVLALTYTLEEEHGGDLGHLRKT-----TVTRIA---IMANDKAPETKKEGEDXXXXXXXXXXXXXXXXXXAGDERVYVEVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKPCFSWANAVKATAXXXXXXXXXXXXXXXXEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRRGCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKKN 588
            +A + P +  T  S    +KV HLV+D+GA+IKG   +L  +AE+FWT+P+V+ E+RD R+R  LD LPF LRTREP+ +A KAV +F+R+TGD++ LS  DLRV+ALTY LE E  G   HL+ T     T+TR A   I+  D+    K  G                      DE +  E  +                                                                                         A A       XXXXXXXXXXXXXX                    E  D  +  P+        +  SR LGG                     + WIN  N+    A+  +S+FG  K        + V                 TTD+ MQNV+LQ+GLRLLS DG+ + RVKQW  +C +C     + ER+FCP+CGN  L RV+ S+  +   +  H +       G K+S+PK PKG  GR +GD+LLREDQL MGIW Q+ ++  K + S FG ++   LGV   K ++   I  G+GR NPN+Q+GRERRGKKK+N
Sbjct:   47 VATAQPATMATSRSGADSKKVLHLVVDSGAIIKGT--NLGVLAENFWTVPDVLDEIRDKRSRAVLDALPFTLRTREPSAEAMKAVVNFSRKTGDFAYLSLTDLRVMALTYMLESEQNG-TDHLKDTPGTSATITRDANGKIIGGDRRFPCKYFG-------TAIGCKYGDECKFIHDESLVAEAGE-----------------------------------------------------------------------------------------AGAKPVKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEETVDEALNQPVPEA-IRKADVKSRILGG-------FGASSNAGASEDDGKNWINTSNL----AQFKDSMFGDGKNVEAIKNEIAVA--------------CITTDYSMQNVMLQIGLRLLSTDGMMIKRVKQWILKCIACFTTTTEMERLFCPKCGNNTLERVAYSIGQDGQMVFYHRANRPNKLMGTKFSLPK-PKG--GR-QGDLLLREDQLMMGIWGQRQRQHKKVMQSAFGENVAHDLGVKAEKHSS---IVVGFGRMNPNAQKGRERRGKKKRN 512
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: KUF94320.1 (hypothetical protein AM588_10006139 [Phytophthora nicotianae])

HSP 1 Score: 222.6 bits (566), Expect = 3.200e-54
Identity = 200/579 (34.54%), Postives = 269/579 (46.46%), Query Frame = 0 
Query:   15 DRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVIAEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDLRVLALTYTLEEEHGGDLGHLRKT-----TVTRIAIMANDKAPETKKEGEDXXXXXXXXXXXXXXXXXXAGDERVYVEVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKPCFSWANAVKATAXXXXXXXXXXXXXXXXEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRR--GCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            ++KV HLV+D+GA+IKG   +LA +AE+FWT+P+V+ E+RD ++R  L+ LPF L+TREP+ +A KAV +F+R+TGD++ LS  DLRV+AL+Y LE E  G   HLR +     TVTR    AN K     +                        DE                                                                                                  +AV    XXXXXXXXXXXXXXXX           +  ++ +  E E+  V   ++    N  +  SR +GG                     + WI  +N     AK T S FG  KG     + L V                 TTDF MQNV+LQ+GLRLLS +G+ + RVKQW  RC +C     + +R+FCP+CGN+ + RVS S+D + G +  + ++  RP +  G KYS+PK PKG  GR  GD+LLREDQL +GIW Q+ ++  K + S FG ++   LGV   K     GIQ GYGR NPNSQ+GRERRGKKKK
Sbjct:   49 NKKVLHLVIDSGAIIKGT--NLAVLAENFWTVPDVLDEIRDKKSRAILERLPFTLQTREPSAEAMKAVVNFSRKTGDFTYLSLTDLRVMALSYQLEVEANG-ADHLRTSPELSQTVTR---AANGKIVGGSQTNIPCKYFGTAMGCKYGDECRFTHDETAVANTE------------------------------------------------------------------------------------------GDAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIESDEPTQEETEEPVVEQVISEEIRN-ADVKSRIMGG-------FAASSNAGAAEDDGKNWITSDNF----AKFTASPFGDGKGLEEISSRLSVA--------------CITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMERVSYSLDRD-GHMTFY-TRANRPTKLSGTKYSLPK-PKG--GR-NGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAEKQT---GIQVGYGRMNPNSQKGRERRGKKKK 496
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: ETI36683.1 (hypothetical protein F443_17199 [Phytophthora parasitica P1569] >ETM36770.1 hypothetical protein L914_16575 [Phytophthora parasitica])

HSP 1 Score: 221.9 bits (564), Expect = 5.400e-54
Identity = 201/579 (34.72%), Postives = 268/579 (46.29%), Query Frame = 0 
Query:   15 DRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVIAEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDLRVLALTYTLEEEHGGDLGHLRKT-----TVTRIAIMANDKAPETKKEGEDXXXXXXXXXXXXXXXXXXAGDERVYVEVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKPCFSWANAVKATAXXXXXXXXXXXXXXXXEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRR--GCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            ++KV HLV+D+GA+IKG   +LA +AE+FWT+P+V+ E+RD ++R  L+ LPF L+TREP+ +A KAV +F+R+TGD++ LS  DLRV+AL+Y LE E  G   HLR +     TVTR    AN K     +                        DE                                                                                           K             XXXXXXXXXXXXXXX E++          + +  +SE+    + N    +R  GG A S   G A                    + WI  +N     AK T S FG  KG     + L V                 TTDF MQNV+LQ+GLRLLS +G+ + RVKQW  RC +C     + +R+FCP+CGN+ + RVS S+D + G +  + ++  RP +  G KYS+PK PKG  GR  GD+LLREDQL +GIW Q+ ++  K + S FG ++   LGV   K     GIQ GYGR NPNSQ+GRERRGKKKK
Sbjct:   49 NKKVLHLVIDSGAIIKGT--NLAVLAENFWTVPDVLDEIRDKKSRAILERLPFTLQTREPSAEAMKAVVNFSRKTGDFTYLSLTDLRVMALSYQLEVEANG-ADHLRTSPELSQTVTR---AANGKIVGGSQTNIPCKYFGTAMGCKYGDECRFTHDETAVANTEGDAEAP------------------------------------------------------------------------------KKXXXXXXXXXXXXXXXXXXXXXXXXXXXIESDEPTQEETEEPVVEQVISEE----IRNADVKSRIMGGFAASSNAGAA----------------EDDGKNWITSDNF----AKFTASPFGDGKGLEEISSRLSVA--------------CITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMERVSYSLDRD-GHMTFY-TRANRPTKLSGTKYSLPK-PKG--GR-NGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAEKQT---GIQVGYGRMNPNSQKGRERRGKKKK 496
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: ETK76904.1 (hypothetical protein L915_16742 [Phytophthora parasitica] >ETL30330.1 hypothetical protein L916_16651 [Phytophthora parasitica] >ETP06514.1 hypothetical protein F441_17073 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 221.9 bits (564), Expect = 5.400e-54
Identity = 201/579 (34.72%), Postives = 268/579 (46.29%), Query Frame = 0 
Query:   15 DRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVIAEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDLRVLALTYTLEEEHGGDLGHLRKT-----TVTRIAIMANDKAPETKKEGEDXXXXXXXXXXXXXXXXXXAGDERVYVEVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKPCFSWANAVKATAXXXXXXXXXXXXXXXXEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRR--GCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            ++KV HLV+D+GA+IKG   +LA +AE+FWT+P+V+ E+RD ++R  L+ LPF L+TREP+ +A KAV +F+R+TGD++ LS  DLRV+AL+Y LE E  G   HLR +     TVTR    AN K     +                        DE                                                                                           K             XXXXXXXXXXXXXXX E++          + +  +SE+    + N    +R  GG A S   G A                    + WI  +N     AK T S FG  KG     + L V                 TTDF MQNV+LQ+GLRLLS +G+ + RVKQW  RC +C     + +R+FCP+CGN+ + RVS S+D + G +  + ++  RP +  G KYS+PK PKG  GR  GD+LLREDQL +GIW Q+ ++  K + S FG ++   LGV   K     GIQ GYGR NPNSQ+GRERRGKKKK
Sbjct:   49 NKKVLHLVIDSGAIIKGT--NLAVLAENFWTVPDVLDEIRDKKSRAILERLPFTLQTREPSAEAMKAVVNFSRKTGDFTYLSLTDLRVMALSYQLEVEANG-ADHLRTSPELSQTVTR---AANGKIVGGSQTNIPCKYFGTAMGCKYGDECRFTHDETAVANTEGDAEAP------------------------------------------------------------------------------KKXXXXXXXXXXXXXXXXXXXXXXXXXXXIESDEPTQEETEEPVVEQVISEE----IRNADVKSRIMGGFAASSNAGAA----------------EDDGKNWITSDNF----AKFTASPFGDGKGLEEISSRLSVA--------------CITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMERVSYSLDRD-GHMTFY-TRANRPTKLSGTKYSLPK-PKG--GR-NGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAEKQT---GIQVGYGRMNPNSQKGRERRGKKKK 496
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: XP_008912555.1 (hypothetical protein PPTG_16804 [Phytophthora parasitica INRA-310] >ETN02172.1 hypothetical protein PPTG_16804 [Phytophthora parasitica INRA-310])

HSP 1 Score: 221.9 bits (564), Expect = 5.400e-54
Identity = 201/579 (34.72%), Postives = 268/579 (46.29%), Query Frame = 0 
Query:   15 DRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVIAEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDLRVLALTYTLEEEHGGDLGHLRKT-----TVTRIAIMANDKAPETKKEGEDXXXXXXXXXXXXXXXXXXAGDERVYVEVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKPCFSWANAVKATAXXXXXXXXXXXXXXXXEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRR--GCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            ++KV HLV+D+GA+IKG   +LA +AE+FWT+P+V+ E+RD ++R  L+ LPF L+TREP+ +A KAV +F+R+TGD++ LS  DLRV+AL+Y LE E  G   HLR +     TVTR    AN K     +                        DE                                                                                           K             XXXXXXXXXXXXXXX E++          + +  +SE+    + N    +R  GG A S   G A                    + WI  +N     AK T S FG  KG     + L V                 TTDF MQNV+LQ+GLRLLS +G+ + RVKQW  RC +C     + +R+FCP+CGN+ + RVS S+D + G +  + ++  RP +  G KYS+PK PKG  GR  GD+LLREDQL +GIW Q+ ++  K + S FG ++   LGV   K     GIQ GYGR NPNSQ+GRERRGKKKK
Sbjct:   49 NKKVLHLVIDSGAIIKGT--NLAVLAENFWTVPDVLDEIRDKKSRAILERLPFTLQTREPSAEAMKAVVNFSRKTGDFTYLSLTDLRVMALSYQLEVEANG-ADHLRTSPELSQTVTR---AANGKIVGGSQTNIPCKYFGTAMGCKYGDECRFTHDETAVANTEGDAEAP------------------------------------------------------------------------------KKXXXXXXXXXXXXXXXXXXXXXXXXXXXIESDEPTQEETEEPVVEQVISEE----IRNADVKSRIMGGFAASSNAGAA----------------EDDGKNWITSDNF----AKFTASPFGDGKGLEEISSRLSVA--------------CITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMERVSYSLDRD-GHMTFY-TRANRPTKLSGTKYSLPK-PKG--GR-NGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAEKQT---GIQVGYGRMNPNSQKGRERRGKKKK 496
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: ETP34626.1 (hypothetical protein F442_17074 [Phytophthora parasitica P10297])

HSP 1 Score: 221.9 bits (564), Expect = 5.400e-54
Identity = 201/579 (34.72%), Postives = 268/579 (46.29%), Query Frame = 0 
Query:   15 DRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVIAEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDLRVLALTYTLEEEHGGDLGHLRKT-----TVTRIAIMANDKAPETKKEGEDXXXXXXXXXXXXXXXXXXAGDERVYVEVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKPCFSWANAVKATAXXXXXXXXXXXXXXXXEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRR--GCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            ++KV HLV+D+GA+IKG   +LA +AE+FWT+P+V+ E+RD ++R  L+ LPF L+TREP+ +A KAV +F+R+TGD++ LS  DLRV+AL+Y LE E  G   HLR +     TVTR    AN K     +                        DE                                                                                           K             XXXXXXXXXXXXXXX E++          + +  +SE+    + N    +R  GG A S   G A                    + WI  +N     AK T S FG  KG     + L V                 TTDF MQNV+LQ+GLRLLS +G+ + RVKQW  RC +C     + +R+FCP+CGN+ + RVS S+D + G +  + ++  RP +  G KYS+PK PKG  GR  GD+LLREDQL +GIW Q+ ++  K + S FG ++   LGV   K     GIQ GYGR NPNSQ+GRERRGKKKK
Sbjct:   49 NKKVLHLVIDSGAIIKGT--NLAVLAENFWTVPDVLDEIRDKKSRAILERLPFTLQTREPSAEAMKAVVNFSRKTGDFTYLSLTDLRVMALSYQLEVEANG-ADHLRTSPELSQTVTR---AANGKIVGGSQTNIPCKYFGTAMGCKYGDECRFTHDETAVANTEGDAEAP------------------------------------------------------------------------------KKXXXXXXXXXXXXXXXXXXXXXXXXXXXIESDEPTQEEAEEPVVEQVISEE----IRNADVKSRIMGGFAASSNAGAA----------------EDDGKNWITSDNF----AKFTASPFGDGKGLEEISSRLSVA--------------CITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMERVSYSLDRD-GHMTFY-TRANRPTKLSGTKYSLPK-PKG--GR-NGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAEKQT---GIQVGYGRMNPNSQKGRERRGKKKK 496
[Close]
BLAST of NO15G02560 vs. NCBI_GenBank
Match: ETL83572.1 (hypothetical protein L917_16472 [Phytophthora parasitica])

HSP 1 Score: 221.5 bits (563), Expect = 7.000e-54
Identity = 202/579 (34.89%), Postives = 271/579 (46.80%), Query Frame = 0 
Query:   15 DRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVIAEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDLRVLALTYTLEEEHGGDLGHLRKT-----TVTRIAIMANDKAPETKKEGEDXXXXXXXXXXXXXXXXXXAGDERVYVEVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKPCFSWANAVKATAXXXXXXXXXXXXXXXXEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAXXXXXXXXXXXXXXXXXXXXEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGXXXXXXXXXXXXXXXXTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRR--GCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            ++KV HLV+D+GA+IKG   +LA +AE+FWT+P+V+ E+RD ++R  L+ LPF L+TREP+ +A KAV +F+R+TGD++ LS  DLRV+AL+Y LE E  G   HLR +     TVTR    AN K     +                        DE   V + +                                                                                   K             XXXXXXXXXXXXXXX E++          + +  +SE+    + N    +R  GG A S   G A                    + WI  +N     AK T S FG  KG     + L V                 TTDF MQNV+LQ+GLRLLS +G+ + RVKQW  RC +C     + +R+FCP+CGN+ + RVS S+D + G +  + ++  RP +  G KYS+PK PKG  GR  GD+LLREDQL +GIW Q+ ++  K + S FG ++   LGV   K     GIQ GYGR NPNSQ+GRERRGKKKK
Sbjct:   49 NKKVLHLVIDSGAIIKGT--NLAVLAENFWTVPDVLDEIRDKKSRAILERLPFTLQTREPSAEAMKAVVNFSRKTGDFTYLSLTDLRVMALSYQLEVEANG-ADHLRTSPELSQTVTR---AANGKIVGGSQTNIPCKYFGTAMGCKYGDECRFTHDETA-VAITEGDAEAP-----------------------------------------------------------------------------KKXXXXXXXXXXXXXXXXXXXXXXXXXXXIESDEPTQEETEEPVVEQVISEE----IRNADVKSRIMGGFAASSNAGAA----------------EDDGKNWITSDNF----AKFTASPFGDGKGLEEISSRLSVA--------------CITTDFSMQNVMLQIGLRLLSTEGMIIKRVKQWILRCIACFTTSTEMDRLFCPKCGNSTMERVSYSLDRD-GHMTFY-TRANRPTKLSGTKYSLPK-PKG--GR-NGDLLLREDQLLVGIWGQRQRQHKKVMQSAFGENVAHDLGVKAEKQT---GIQVGYGRMNPNSQKGRERRGKKKK 496
The following BLAST results are available for this feature:
BLAST of NO15G02560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855024.18.500e-9260.00RNA-binding protein NOB1, partial [Nannochloropsis... [more]
EWM22320.11.600e-8286.36ribosome biogenesis protein nob1 [Nannochloropsis ... [more]
CBN76614.16.600e-6838.66conserved unknown protein [Ectocarpus siliculosus][more]
GAX92706.12.400e-5432.94Hypothetical protein PINS_000615 [Pythium insidios... [more]
KUF94320.13.200e-5434.54hypothetical protein AM588_10006139 [Phytophthora ... [more]
ETI36683.15.400e-5434.72hypothetical protein F443_17199 [Phytophthora para... [more]
ETK76904.15.400e-5434.72hypothetical protein L915_16742 [Phytophthora para... [more]
XP_008912555.15.400e-5434.72hypothetical protein PPTG_16804 [Phytophthora para... [more]
ETP34626.15.400e-5434.72hypothetical protein F442_17074 [Phytophthora para... [more]
ETL83572.17.000e-5434.89hypothetical protein L917_16472 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02560.1NO15G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100118g2gene8108Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02560.1NO15G02560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02560 ID=NO15G02560|Name=NO15G02560|organism=Nannochloropsis oceanica|type=gene|length=1770bp
ATGGCCGAGTCCACGCCCACGTCATCCACGACCCTGAACAGCGATAGAAA
AGTCCGGCACCTGGTGCTAGACACGGGTGCGCTGATCAAAGGCCAGGGGT
ACAGCTTGGCACGTATGGCGGAGCACTTCTGGACCATCCCAGAAGTGATT
GCCGAGGTGCGTGATCCCCGTGCCCGCTTCCACCTGGACACCTTGCCGTT
TGAATTGCGCACACGCGAGCCAACTCTACAGGCGTGTAAGGCCGTGGCAG
ATTTTGCGAGACAGACGGGGGATTACTCGGCTTTGTCCAAGGTGGATTTG
AGAGTGTTGGCCTTGACGTACACGTTGGAGGAGGAGCATGGGGGGGATCT
TGGGCATTTAAGGAAGACGACAGTAACGCGAATAGCGATCATGGCTAATG
ATAAGGCTCCTGAGACAAAGAAGGAGGGAGAGGATAAGGAGGAGGAGGAA
GGGGCGAAAAATGACGGAGAGCGGGAGGCGGAGGGAGAGGCGGGGGATGA
ACGTGTATATGTGGAGGTGGCGGATGAAGATAGCAGCGATGAGGAAGATG
AGGGTGGAGAAGATGAAACTGAAGTGGAAAGTAAAAGCGAGGGGGAGGAG
GAAAGTAACGAAGCCGCCTTGATCACTACCACTACCACTACTACTCCTCC
TCCCCCTCCTCCTACTACTACTACTACAACCACAACTACTATGGCTGCTG
CTTCAATACCCGCTGCAACGACCTGCCCTCCTCCATCCGCCGACAGCAGC
AGCAGCAATAGTAGCAGCACTATAAAACCCTGTTTTAGCTGGGCAAATGC
CGTGAAAGCGACGGCGTCAAAGCCTCCCCCACCGGCCAACGCCGTAGCTG
CTCGTCGTCAAAAGGAAGCAGAGACGGAGGGCACGCCTGCCATTCCTCTT
GCGATTGAAAAGCTTTCTTTGAGTGAAAAGGAGGATCGCTTTGTTGGGAA
CCCATTAACCACCACAAGGGCGAATGGTGGTGAGGCGACCTCTCGTTTCT
TGGGCGGGGCGGGTCGAGAGGCAGCGACGCAAGGACATGGAGGGGGAGGG
CAAGAGGAGGAGGATGATGGGGAGGGTTGGATAAATGTGGAGAACATCAA
GGCAGTTCGGGCCAAGGGGACGGAGAGCTTGTTTGGAGCAAGAAAGGGGG
ATGGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGGGGTG
GTGCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAATGCA
AAATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCGATGGTGTGG
CCGTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGCGAAA
ATTGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATGCTTA
TCTGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTGCGCG
TGCACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTCGATT
CCCAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGTTGCT
GCGCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAGAGGA
GGACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACCGAGACGTTA
GGTGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATGGATA
TGGACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGAAAGA
AGAAGAAGAATAAGAGTTAG
back to top

protein sequence of NO15G02560.1

>NO15G02560.1-protein ID=NO15G02560.1-protein|Name=NO15G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MAESTPTSSTTLNSDRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVI
AEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDL
RVLALTYTLEEEHGGDLGHLRKTTVTRIAIMANDKAPETKKEGEDKEEEE
GAKNDGEREAEGEAGDERVYVEVADEDSSDEEDEGGEDETEVESKSEGEE
ESNEAALITTTTTTTPPPPPPTTTTTTTTTMAAASIPAATTCPPPSADSS
SSNSSSTIKPCFSWANAVKATASKPPPPANAVAARRQKEAETEGTPAIPL
AIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAGREAATQGHGGGG
QEEEDDGEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGGGEGGV
VPPPPVVACVTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAK
IVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRRGCKYSI
PKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETL
GVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKKNKS*
back to top
Synonyms
Publications