NO15G02560.1, NO15G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02560.1
Unique NameNO15G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr15:699940..701709 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:699940..701709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02560.1 vs.
Match: XP_005855024.1 (RNA-binding protein NOB1, partial [Nannochloropsis gaditana CCMP526]; EKU21336.1 RNA-binding protein NOB1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 378.3 bits (970), Expect = 4.500e-101
Identity = 241/416 (57.93%), Postives = 283/416 (68.03%), Query Frame = 0 
Query:  176 EDSSDEEDEGGEDETEVESKSEGEEESNEAALITTTTTTTPPPPPPTTTTTTTTTMAAASIPAATTCPPPSADSSSSNSSSTIKPCFSWANAVKATASKPPPPANAVAARRQKEAETEGTPAIPLAIEKLSLSEKEDRFVGNPLTTTRANG-----GEATSRFLGGAGREAATQGHGGGGQEEEDDGEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGGGEGGVVPPPPVVACVTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAKIVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRRGCKYSIPKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETLGVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKK 587
            E+  +EE+EG  +E EV  + +GE E  +  +              TTT        A   PA  + P P    +S           SWA AVKATAS+PPPPA A+ ARR++  +    P+IP   + L++ E   R    P  +    G     G  TSR +GGAG+EA   G   G +EE DD EGWI+  N+ +VRAKG ES+FG R G G T    GV      + P  P+VACVTTDF MQNV+LQMGLRL+S++G AVTRVKQWARRCESCAK+VHDQ+RMFCPRCGNAYLSRVSISVDS TGQLRVHLSKLWRPR GCKYSIPK  KGK  RWEGD+LLREDQLQMGIWQQK+KRRTK L SMFGADITETLGVAV+K+ AA+GIQ+GYGRKNPNSQRGRERRGK+KK
Sbjct:    1 EEEGEEEEEG--EEEEVVDRGKGETEETDGGV---RRGDEERDAEDTTTEGVADEGGARPAPAPPSLPTPPPLHASPQGGR------SWAQAVKATASRPPPPAKAMGARRRQGTD----PSIPF--QALTMEETA-RGGPRPALSRVVEGRAGEHGGVTSRIIGGAGQEAL--GLASGTREEVDDEEGWIHTGNLTSVRAKGVESVFGPRGGTGPTQDRDGV------MEPSLPLVACVTTDFAMQNVMLQMGLRLMSLEGAAVTRVKQWARRCESCAKLVHDQDRMFCPRCGNAYLSRVSISVDSATGQLRVHLSKLWRPRPGCKYSIPKPGKGKASRWEGDLLLREDQLQMGIWQQKMKRRTKMLDSMFGADITETLGVAVTKSTAANGIQFGYGRKNPNSQRGRERRGKRKK 390
The following BLAST results are available for this feature:
BLAST of NO15G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855024.14.500e-10157.93RNA-binding protein NOB1, partial [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02560NO15G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02560.1NO15G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02560.1.cds1NO15G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02560.1 ID=NO15G02560.1|Name=NO15G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp
ATGGCCGAGTCCACGCCCACGTCATCCACGACCCTGAACAGCGATAGAAA
AGTCCGGCACCTGGTGCTAGACACGGGTGCGCTGATCAAAGGCCAGGGGT
ACAGCTTGGCACGTATGGCGGAGCACTTCTGGACCATCCCAGAAGTGATT
GCCGAGGTGCGTGATCCCCGTGCCCGCTTCCACCTGGACACCTTGCCGTT
TGAATTGCGCACACGCGAGCCAACTCTACAGGCGTGTAAGGCCGTGGCAG
ATTTTGCGAGACAGACGGGGGATTACTCGGCTTTGTCCAAGGTGGATTTG
AGAGTGTTGGCCTTGACGTACACGTTGGAGGAGGAGCATGGGGGGGATCT
TGGGCATTTAAGGAAGACGACAGTAACGCGAATAGCGATCATGGCTAATG
ATAAGGCTCCTGAGACAAAGAAGGAGGGAGAGGATAAGGAGGAGGAGGAA
GGGGCGAAAAATGACGGAGAGCGGGAGGCGGAGGGAGAGGCGGGGGATGA
ACGTGTATATGTGGAGGTGGCGGATGAAGATAGCAGCGATGAGGAAGATG
AGGGTGGAGAAGATGAAACTGAAGTGGAAAGTAAAAGCGAGGGGGAGGAG
GAAAGTAACGAAGCCGCCTTGATCACTACCACTACCACTACTACTCCTCC
TCCCCCTCCTCCTACTACTACTACTACAACCACAACTACTATGGCTGCTG
CTTCAATACCCGCTGCAACGACCTGCCCTCCTCCATCCGCCGACAGCAGC
AGCAGCAATAGTAGCAGCACTATAAAACCCTGTTTTAGCTGGGCAAATGC
CGTGAAAGCGACGGCGTCAAAGCCTCCCCCACCGGCCAACGCCGTAGCTG
CTCGTCGTCAAAAGGAAGCAGAGACGGAGGGCACGCCTGCCATTCCTCTT
GCGATTGAAAAGCTTTCTTTGAGTGAAAAGGAGGATCGCTTTGTTGGGAA
CCCATTAACCACCACAAGGGCGAATGGTGGTGAGGCGACCTCTCGTTTCT
TGGGCGGGGCGGGTCGAGAGGCAGCGACGCAAGGACATGGAGGGGGAGGG
CAAGAGGAGGAGGATGATGGGGAGGGTTGGATAAATGTGGAGAACATCAA
GGCAGTTCGGGCCAAGGGGACGGAGAGCTTGTTTGGAGCAAGAAAGGGGG
ATGGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGGGGTG
GTGCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAATGCA
AAATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCGATGGTGTGG
CCGTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGCGAAA
ATTGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATGCTTA
TCTGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTGCGCG
TGCACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTCGATT
CCCAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGTTGCT
GCGCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAGAGGA
GGACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACCGAGACGTTA
GGTGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATGGATA
TGGACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGAAAGA
AGAAGAAGAATAAGAGTTAG
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protein sequence of NO15G02560.1

>NO15G02560.1-protein ID=NO15G02560.1-protein|Name=NO15G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MAESTPTSSTTLNSDRKVRHLVLDTGALIKGQGYSLARMAEHFWTIPEVI
AEVRDPRARFHLDTLPFELRTREPTLQACKAVADFARQTGDYSALSKVDL
RVLALTYTLEEEHGGDLGHLRKTTVTRIAIMANDKAPETKKEGEDKEEEE
GAKNDGEREAEGEAGDERVYVEVADEDSSDEEDEGGEDETEVESKSEGEE
ESNEAALITTTTTTTPPPPPPTTTTTTTTTMAAASIPAATTCPPPSADSS
SSNSSSTIKPCFSWANAVKATASKPPPPANAVAARRQKEAETEGTPAIPL
AIEKLSLSEKEDRFVGNPLTTTRANGGEATSRFLGGAGREAATQGHGGGG
QEEEDDGEGWINVENIKAVRAKGTESLFGARKGDGYTGASLGVGGGEGGV
VPPPPVVACVTTDFGMQNVLLQMGLRLLSIDGVAVTRVKQWARRCESCAK
IVHDQERMFCPRCGNAYLSRVSISVDSETGQLRVHLSKLWRPRRGCKYSI
PKAPKGKTGRWEGDMLLREDQLQMGIWQQKVKRRTKALTSMFGADITETL
GVAVSKTAAADGIQYGYGRKNPNSQRGRERRGKKKKNKS*
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mRNA from alignment at chr15:699940..701709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02560.1 ID=NO15G02560.1|Name=NO15G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp|location=Sequence derived from alignment at chr15:699940..701709- (Nannochloropsis oceanica)
ATGGCCGAGTCCACGCCCACGTCATCCACGACCCTGAACAGCGATAGAAA
AGTCCGGCACCTGGTGCTAGACACGGGTGCGCTGATCAAAGGCCAGGGGT
ACAGCTTGGCACGTATGGCGGAGCACTTCTGGACCATCCCAGAAGTGATT
GCCGAGGTGCGTGATCCCCGTGCCCGCTTCCACCTGGACACCTTGCCGTT
TGAATTGCGCACACGCGAGCCAACTCTACAGGCGTGTAAGGCCGTGGCAG
ATTTTGCGAGACAGACGGGGGATTACTCGGCTTTGTCCAAGGTGGATTTG
AGAGTGTTGGCCTTGACGTACACGTTGGAGGAGGAGCATGGGGGGGATCT
TGGGCATTTAAGGAAGACGACAGTAACGCGAATAGCGATCATGGCTAATG
ATAAGGCTCCTGAGACAAAGAAGGAGGGAGAGGATAAGGAGGAGGAGGAA
GGGGCGAAAAATGACGGAGAGCGGGAGGCGGAGGGAGAGGCGGGGGATGA
ACGTGTATATGTGGAGGTGGCGGATGAAGATAGCAGCGATGAGGAAGATG
AGGGTGGAGAAGATGAAACTGAAGTGGAAAGTAAAAGCGAGGGGGAGGAG
GAAAGTAACGAAGCCGCCTTGATCACTACCACTACCACTACTACTCCTCC
TCCCCCTCCTCCTACTACTACTACTACAACCACAACTACTATGGCTGCTG
CTTCAATACCCGCTGCAACGACCTGCCCTCCTCCATCCGCCGACAGCAGC
AGCAGCAATAGTAGCAGCACTATAAAACCCTGTTTTAGCTGGGCAAATGC
CGTGAAAGCGACGGCGTCAAAGCCTCCCCCACCGGCCAACGCCGTAGCTG
CTCGTCGTCAAAAGGAAGCAGAGACGGAGGGCACGCCTGCCATTCCTCTT
GCGATTGAAAAGCTTTCTTTGAGTGAAAAGGAGGATCGCTTTGTTGGGAA
CCCATTAACCACCACAAGGGCGAATGGTGGTGAGGCGACCTCTCGTTTCT
TGGGCGGGGCGGGTCGAGAGGCAGCGACGCAAGGACATGGAGGGGGAGGG
CAAGAGGAGGAGGATGATGGGGAGGGTTGGATAAATGTGGAGAACATCAA
GGCAGTTCGGGCCAAGGGGACGGAGAGCTTGTTTGGAGCAAGAAAGGGGG
ATGGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGGGGTG
GTGCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAATGCA
AAATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCGATGGTGTGG
CCGTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGCGAAA
ATTGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATGCTTA
TCTGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTGCGCG
TGCACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTCGATT
CCCAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGTTGCT
GCGCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAGAGGA
GGACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACCGAGACGTTA
GGTGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATGGATA
TGGACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGAAAGA
AGAAGAAGAATAAGAGTTAG
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Coding sequence (CDS) from alignment at chr15:699940..701709-

>NO15G02560.1 ID=NO15G02560.1|Name=NO15G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at chr15:699940..701709- (Nannochloropsis oceanica)
ATGGCCGAGTCCACGCCCACGTCATCCACGACCCTGAACAGCGATAGAAA
AGTCCGGCACCTGGTGCTAGACACGGGTGCGCTGATCAAAGGCCAGGGGT
ACAGCTTGGCACGTATGGCGGAGCACTTCTGGACCATCCCAGAAGTGATT
GCCGAGGTGCGTGATCCCCGTGCCCGCTTCCACCTGGACACCTTGCCGTT
TGAATTGCGCACACGCGAGCCAACTCTACAGGCGTGTAAGGCCGTGGCAG
ATTTTGCGAGACAGACGGGGGATTACTCGGCTTTGTCCAAGGTGGATTTG
AGAGTGTTGGCCTTGACGTACACGTTGGAGGAGGAGCATGGGGGGGATCT
TGGGCATTTAAGGAAGACGACAGTAACGCGAATAGCGATCATGGCTAATG
ATAAGGCTCCTGAGACAAAGAAGGAGGGAGAGGATAAGGAGGAGGAGGAA
GGGGCGAAAAATGACGGAGAGCGGGAGGCGGAGGGAGAGGCGGGGGATGA
ACGTGTATATGTGGAGGTGGCGGATGAAGATAGCAGCGATGAGGAAGATG
AGGGTGGAGAAGATGAAACTGAAGTGGAAAGTAAAAGCGAGGGGGAGGAG
GAAAGTAACGAAGCCGCCTTGATCACTACCACTACCACTACTACTCCTCC
TCCCCCTCCTCCTACTACTACTACTACAACCACAACTACTATGGCTGCTG
CTTCAATACCCGCTGCAACGACCTGCCCTCCTCCATCCGCCGACAGCAGC
AGCAGCAATAGTAGCAGCACTATAAAACCCTGTTTTAGCTGGGCAAATGC
CGTGAAAGCGACGGCGTCAAAGCCTCCCCCACCGGCCAACGCCGTAGCTG
CTCGTCGTCAAAAGGAAGCAGAGACGGAGGGCACGCCTGCCATTCCTCTT
GCGATTGAAAAGCTTTCTTTGAGTGAAAAGGAGGATCGCTTTGTTGGGAA
CCCATTAACCACCACAAGGGCGAATGGTGGTGAGGCGACCTCTCGTTTCT
TGGGCGGGGCGGGTCGAGAGGCAGCGACGCAAGGACATGGAGGGGGAGGG
CAAGAGGAGGAGGATGATGGGGAGGGTTGGATAAATGTGGAGAACATCAA
GGCAGTTCGGGCCAAGGGGACGGAGAGCTTGTTTGGAGCAAGAAAGGGGG
ATGGCTACACGGGGGCGAGCTTGGGGGTGGGAGGTGGGGAGGGAGGGGTG
GTGCCGCCACCGCCTGTGGTGGCTTGCGTGACGACGGACTTTGGAATGCA
AAATGTTTTGCTGCAAATGGGGTTGAGATTATTGTCAATCGATGGTGTGG
CCGTGACAAGGGTTAAGCAATGGGCGCGGCGGTGTGAGAGTTGCGCGAAA
ATTGTGCACGATCAGGAGCGGATGTTTTGCCCGAGGTGTGGGAATGCTTA
TCTGTCGCGGGTGTCGATTTCGGTGGACAGTGAAACGGGCCAGTTGCGCG
TGCACTTGAGCAAGCTGTGGCGGCCAAGGAGGGGGTGCAAGTACTCGATT
CCCAAGGCCCCCAAGGGTAAGACAGGCCGGTGGGAGGGTGACATGTTGCT
GCGCGAGGATCAATTGCAAATGGGGATTTGGCAGCAGAAGGTCAAGAGGA
GGACAAAGGCTCTTACCAGTATGTTTGGGGCAGACATCACCGAGACGTTA
GGTGTGGCGGTGAGCAAGACGGCGGCGGCAGATGGGATTCAGTATGGATA
TGGACGGAAGAATCCGAATTCGCAGCGGGGGAGGGAGAGGCGGGGAAAGA
AGAAGAAGAATAAGAGTTAG
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Synonyms
Publications