NO15G02450, NO15G02450 (gene) Nannochloropsis oceanica

Overview
NameNO15G02450
Unique NameNO15G02450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2747
Alignment locationchr15:671665..674411 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:671665..674411 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027370Znf-RING_LisH
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
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BLAST of NO15G02450 vs. NCBI_GenBank
Match: EWM22325.1 (putative zinc ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 318.5 bits (815), Expect = 4.700e-83
Identity = 181/304 (59.54%), Postives = 195/304 (64.14%), Query Frame = 0 
Query:    1 MTAATSSLWLVASNIQFHDDTALP-VGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQAEDGDTLEPQDDVFYLSRLNDPTTYFFQWICKRYRLTVKPEPHSCPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTLDPDVLRAQFQTQRFANLSWRLGKTRATPVFSKPSWEVLFSGGVGDAGIGGEKCGGCSGAGGERRAPTPPFCEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGPDIGALPRRLLMRRAAKSVKRAFVTRDPDVGAAAAAKLKGRWVDLMGGR 304
            M AAT SL+LVASNI F DD +LP  G+S                                  EDGD LEPQDDVFYLSRLNDPTTYFFQWICKRY LTVK EPHSCPICLETS++ IQLSCGHTFCRQCLKAAAE  MSSCALCRKSHTLDPDVLR QFQTQRFAN+SWRLG TRAT VFSKPSWE LF  G G AG  G KC       G+R   + P CE                              VGPDIG LP RLLMRRAAKSV+RAFV+ DPDVG +  A+L+ RW  LMGG+
Sbjct:    1 MAAATESLFLVASNIHFSDDMSLPRFGTS-----TRLLAATCSCSSTPCAAHAATSVDQAASVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKPSWEALFCAGSGGAGNAG-KCD-----VGDR--ASSPSCEA---GEAPTGGGGSVGVTKGKGGKETGRGYVGPDIGGLPHRLLMRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGK 288
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BLAST of NO15G02450 vs. NCBI_GenBank
Match: CBJ27513.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 122.9 bits (307), Expect = 3.800e-24
Identity = 60/120 (50.00%), Postives = 77/120 (64.17%), Query Frame = 0 
Query:   73 DVFYLSRLNDPTTYFFQWICKRYRLTVKP--------EPHSCPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTLDPDVLRAQFQTQRFANLSWRLGKTRATPVFSKPS 185
            DVF LSRLND T+YFF W CK+YR+ + P        E   CPICL++    I+L CGH+FCR CL  +A  NM+SCALCR+   +DP+ LRA+F  QR  NL+ RL      PV S+P+
Sbjct:   20 DVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEEKTRCPICLDSCTKSIELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLA-IPPPPVRSRPT 138
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BLAST of NO15G02450 vs. NCBI_GenBank
Match: XP_009032420.1 (hypothetical protein AURANDRAFT_70600 [Aureococcus anophagefferens] >EGB12778.1 hypothetical protein AURANDRAFT_70600 [Aureococcus anophagefferens])

HSP 1 Score: 69.7 bits (169), Expect = 3.800e-8
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 0 
Query:  106 CPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTLDPDVLRAQFQTQRFANLSWRLGKTRAT 178
            C IC  T    I+L CGH FC  CLK  A  ++++C  CR  H LDPD LRA  +  R    SWR G T+ +
Sbjct:  623 CTICFTTKYEAIRLRCGHAFCGGCLKRCASHDIAACPHCRAPHLLDPDALRAAMEKYRKEYRSWRTGATKGS 694
The following BLAST results are available for this feature:
BLAST of NO15G02450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22325.14.700e-8359.54putative zinc ring finger protein [Nannochloropsis... [more]
CBJ27513.13.800e-2450.00conserved unknown protein [Ectocarpus siliculosus][more]
XP_009032420.13.800e-844.44hypothetical protein AURANDRAFT_70600 [Aureococcus... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001315NSK001315Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02450.1NO15G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|443465gene_4803Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100118g15gene8118Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02450.1NO15G02450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02450 ID=NO15G02450|Name=NO15G02450|organism=Nannochloropsis oceanica|type=gene|length=2747bp
CAGATCCAAAAAAAGCAGCGGCAGCAGCCGGGGTGACGCGGGCGCAAGTC
AAGGAATCTCCGCATCTGCGTTGCACCCACTGCGTAACCACACTACCACG
CCACCATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATT
CAGTTTCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTT
CGCCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCG
CCACTGGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGG
GACACACTCGAGCCTCAGGACGATGTATTCTACCTAAGCCGTCTGAATGA
CCCGACCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCG
TCAAGCCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCAC
CACATCCAGTTATCGTGCGgtacgtgggatgacatgtattcggagggaag
aaggggttgataggcatgtttatgataatgctgaataccttgaatcttgt
cggtgggagtgtcgtcctgctgattcttgtccccccccttttcccctccg
catcacagGCCACACTTTTTGCCGGCAATGCCTCAAAGCTGCCGCGGAGT
GCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACACCCTGGATCCA
GACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCGAATTTGAGCTG
GCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAAACCGAGTTGGG
AGGTGTTGTTTTCAGGAGGAGTGGGAGATGCAGGGATAGGGGGGGAGAAG
TGTGGTGGTTGCTCTGGTGCGGGGGGGGAGCGGCGGGCGCCTACCCCGCC
GTTTTGTGAGGTCGAGGAGGAAGCAGCCACAGTAGCAGCAGCAGCTGCGG
TGGTGGCGGAGCAGGATGGGAAGAAGGGAGGGAAGAAGGGAGGAAGGTAT
GTGGGACCGGACATTGGTGCGTTGCCCCGAAGGTTGTTAATGCGGAGAGC
GGCCAAAAGTGTGAAGCGGGCGTTTGTAACAAGAGATCCGGATGTCGGAG
CAGCCGCGGCCGCAAAGCTCAAGGGGAGGTGGGTTGATTTGATGGGAGGA
AGGGATGTAGGGATGGCGGTGTTGCCTGCAGAGGTAGGGGCAGCACGGGC
TGCAGAGCTGAAGAGGAAGTGGATGGAGTTGATGGGAGGGAGGGAGGGAG
GGAGAGAAGGGGGGATTGCGACGTTGCCTCCGGAGGTGGGAGCCATGAAG
GCAGCTGAACTGAAGGGACGATGGGCGACTCTGATGGGAGGGAGGAAGGG
AGTGACGGCTGTGTTACCAGCTGAGGTGGGAGCGACGAGAGTGGAGGTGA
TGGAGGATCGGTGGGTAGGATTGATGAGGGGGACGGTGGTGGAGGGGGGG
AAGGAGGGAGGGGTAGGGGCAGTGAGGAAGGAGGAGATGACGAGAAGATG
GAAGGAATTGTGTCGGTATGCGGAGGGAGGGAGGGAGGGAGGGGTTGGGG
GGTGGGGGGAGCAGGAGTTGAGGTCGACGTGGTCGGCATTGAGGAAGGGA
GGGAAGGAGGAGGAGGAGGTCGGTGCTAAGCCCTCGGCAGAGCTTCACGG
GATTCTGGCCTCGATGTTGCTTCCGCTTTCCTCTCTTCCTCCCTTCTCTT
CGTCCTCTCCGTCAGTTGAAGATTGTGGCGCATTGTCTGTTCCGGAGCTG
CAGACACGAGCGGAACAACTTTTCCTCTTCCCGGAAGGAGACGAGGGAGT
CGGGGCCTTGTCCAACGCGGCGCTTGATGCCCGGACGACTTTTCCCTTCC
ATTGCTCCCCCTCGTCCTCACCCTCTTCATTTCCCTCAGACGTGGGTGCT
GCTGAGGCGTCAACCTTGACGCGACGATGGCAGTTGCTGATGAAGGGGGG
AGGGAGGGAGGGAGGAAAGGACGTTGGAGCGATGGTACCCTCCTCGCTGA
CTGCACGTTGGCATAAATTGCTCATAGTGGGAGGAGGAGGAGGAGGAGGA
GGGAAAGGGGGGAATGTGGGTGCGGCCACGTCACCAGAGATGAAGGCACG
ATGGGGAAGGAGGGAGGGAGGGAAGGTGTGTTTGGGGGAGGATGTTGGGG
CGTGGGAGGTGCGGGAGTTGAGGGAGAGATGGATGGCGGCGTCAGGAGGA
GCTAAAGGATTAGTGGTGTGAGGAAGATGGAGTGTAAGAGTCGGCGTGTG
AGTGAGTCAGCGAGTGAGTAAGAAAGTCAGTGTGTTAGTGAAAGAGTGAA
AGAGTGAGGGAGTGACAGGTGTACAGATATTGCAAGAGAAGAGACATGAA
AATAAAACGGGCGGAATGCGACGAAGATGAAGTAGAAGGAAAAGTCAGAA
GCAGGAATGTGAAATGGAGGAAATGGGGTAGGAAGGAAGAAGGGCAATAA
CGGTGGCTGCAGTGGGAGTTGAAGTAAACCGTTACAAGACTGACGTGTGA
TAAGGGCAACATTGAAAAACCGTCAATGGTATTCCTTTCCTTGTGCGTCT
CCCCTGCCACTCGCATTATCTTTACTCATTTATTTTCTTCTTTCCGGTCC
CTGCCCGCATACATCAAATGCCCTTGGTAAAAGGCTTCATAGTTGTTTCA
TTCAATACAGTCACTCACACATGGATGTATATATGTGTACGTATACATGT
GTATATATATGCATACACGTTATCTCCCTGCTTTCCTCCCTCCCTCA
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protein sequence of NO15G02450.1

>NO15G02450.1-protein ID=NO15G02450.1-protein|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=659bp
MTAATSSLWLVASNIQFHDDTALPVGSSTSLFAPPSSSSSSSSPPSSSAT
GTSTTTAADGQAEDGDTLEPQDDVFYLSRLNDPTTYFFQWICKRYRLTVK
PEPHSCPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTL
DPDVLRAQFQTQRFANLSWRLGKTRATPVFSKPSWEVLFSGGVGDAGIGG
EKCGGCSGAGGERRAPTPPFCEVEEEAATVAAAAAVVAEQDGKKGGKKGG
RYVGPDIGALPRRLLMRRAAKSVKRAFVTRDPDVGAAAAAKLKGRWVDLM
GGRDVGMAVLPAEVGAARAAELKRKWMELMGGREGGREGGIATLPPEVGA
MKAAELKGRWATLMGGRKGVTAVLPAEVGATRVEVMEDRWVGLMRGTVVE
GGKEGGVGAVRKEEMTRRWKELCRYAEGGREGGVGGWGEQELRSTWSALR
KGGKEEEEVGAKPSAELHGILASMLLPLSSLPPFSSSSPSVEDCGALSVP
ELQTRAEQLFLFPEGDEGVGALSNAALDARTTFPFHCSPSSSPSSFPSDV
GAAEASTLTRRWQLLMKGGGREGGKDVGAMVPSSLTARWHKLLIVGGGGG
GGGKGGNVGAATSPEMKARWGRREGGKVCLGEDVGAWEVRELRERWMAAS
GGAKGLVV*
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Synonyms
Publications