NO15G02450.1, NO15G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02450.1
Unique NameNO15G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2608
Alignment locationchr15:671665..674411 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:671665..674411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO15G02450.1 vs.
Match: EWM22325.1 (putative zinc ring finger protein [Nannochloropsis gaditana])

HSP 1 Score: 370.5 bits (950), Expect = 1.000e-98
Identity = 260/521 (49.90%), Postives = 298/521 (57.20%), Query Frame = 0
Query:    1 MTAATSSLWLVASNIQFHDDTALP-VGSSTSLFAPPSSSSSSSSPPSSSATGTSTTTAADGQAEDGDTLEPQDDVFYLSRLNDPTTYFFQWICKRYRLTVKPEPHSCPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTLDPDVLRAQFQTQRFANLSWRLGKTRATPVFSKPSWEVLFSGGVGDAGIGGEKCGGCSGAGGERRAPTPPFCEVEEEAATVAAAAAVVAEQDGKKGGKKGGR-YVGPDIGALPRRLLMRRAAKSVKRAFVTRDPDVGAAAAAKLKGRWVDLMGGRDV-------GMAVLPAEVGAARAAELKRKW---MELMGGREGGREGGIATLPPE-------VGAMKAAELKGRWATLMGGRKGVTAVLPAEVGATRVEVMEDRWVGLMRGT---------------------------------VVEGGKEGGVGAVRKEEMTRRWKELCRYAEGGREG--GVGGWGEQELRSTWSALRKGGKEEEEVGAKPSAEL 468
            M AAT SL+LVASNI F DD +LP  G+ST L A   ++ S SS P ++   TS   AA    EDGD LEPQDDVFYLSRLNDPTTYFFQWICKRY LTVK EPHSCPICLETS++ IQLSCGHTFCRQCLKAAAE  MSSCALCRKSHTLDPDVLR QFQTQRFAN+SWRLG TRAT VFSKPSWE LF  G G AG  G KC       G+R   + P CE   EA T    +  V +    KGGK+ GR YVGPDIG LP RLLMRRAAKSV+RAFV+ DPDVG +  A+L+ RW  LMGG+         G+AVL  E GA   A L R+W    E  GG+  G     + L  +       VG  + A L   W    G          AEVGA +V  +   W  L+  T                                 V++   + GVGA+ +EEM  RW + C  +          GG   +EL   W  L  G    EEVG KP A L
Sbjct:    1 MAAATESLFLVASNIHFSDDMSLPRFGTSTRLLA---ATCSCSSTPCAAHAATSVDQAA--SVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKPSWEALFCAGSGGAGNAG-KCD-----VGDR--ASSPSCEA-GEAPTGGGGSVGVTK---GKGGKETGRGYVGPDIGGLPHRLLMRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGKATDSKQWKGGVAVLTEEAGAESVAGLTRRWGRGREGQGGQTEGMGSRWSDLIRQGRGKEGGVGGEEQAALTAWWREARGQES-------AEVGAAKVPTLAAAWSLLVPETPGSLAPWAVPTTDCGGLSVAALKARAQRLFLPPVLDATSDAGVGALAREEMQARW-DACFLSSRATLPCLNAGGSDVEELAHRWGKL-MGVDVGEEVGGKPWAAL 495          
The following BLAST results are available for this feature:
BLAST of NO15G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22325.11.000e-9849.90putative zinc ring finger protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02450NO15G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02450.1NO15G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02450.1.cds1NO15G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO15G02450.1.cds2NO15G02450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02450.1 ID=NO15G02450.1|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp
CAGATCCAAAAAAAGCAGCGGCAGCAGCCGGGGTGACGCGGGCGCAAGTC
AAGGAATCTCCGCATCTGCGTTGCACCCACTGCGTAACCACACTACCACG
CCACCATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATT
CAGTTTCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTT
CGCCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCG
CCACTGGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGG
GACACACTCGAGCCTCAGGACGATGTATTCTACCTAAGCCGTCTGAATGA
CCCGACCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCG
TCAAGCCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCAC
CACATCCAGTTATCGTGCGGCCACACTTTTTGCCGGCAATGCCTCAAAGC
TGCCGCGGAGTGCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACA
CCCTGGATCCAGACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCG
AATTTGAGCTGGCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAA
ACCGAGTTGGGAGGTGTTGTTTTCAGGAGGAGTGGGAGATGCAGGGATAG
GGGGGGAGAAGTGTGGTGGTTGCTCTGGTGCGGGGGGGGAGCGGCGGGCG
CCTACCCCGCCGTTTTGTGAGGTCGAGGAGGAAGCAGCCACAGTAGCAGC
AGCAGCTGCGGTGGTGGCGGAGCAGGATGGGAAGAAGGGAGGGAAGAAGG
GAGGAAGGTATGTGGGACCGGACATTGGTGCGTTGCCCCGAAGGTTGTTA
ATGCGGAGAGCGGCCAAAAGTGTGAAGCGGGCGTTTGTAACAAGAGATCC
GGATGTCGGAGCAGCCGCGGCCGCAAAGCTCAAGGGGAGGTGGGTTGATT
TGATGGGAGGAAGGGATGTAGGGATGGCGGTGTTGCCTGCAGAGGTAGGG
GCAGCACGGGCTGCAGAGCTGAAGAGGAAGTGGATGGAGTTGATGGGAGG
GAGGGAGGGAGGGAGAGAAGGGGGGATTGCGACGTTGCCTCCGGAGGTGG
GAGCCATGAAGGCAGCTGAACTGAAGGGACGATGGGCGACTCTGATGGGA
GGGAGGAAGGGAGTGACGGCTGTGTTACCAGCTGAGGTGGGAGCGACGAG
AGTGGAGGTGATGGAGGATCGGTGGGTAGGATTGATGAGGGGGACGGTGG
TGGAGGGGGGGAAGGAGGGAGGGGTAGGGGCAGTGAGGAAGGAGGAGATG
ACGAGAAGATGGAAGGAATTGTGTCGGTATGCGGAGGGAGGGAGGGAGGG
AGGGGTTGGGGGGTGGGGGGAGCAGGAGTTGAGGTCGACGTGGTCGGCAT
TGAGGAAGGGAGGGAAGGAGGAGGAGGAGGTCGGTGCTAAGCCCTCGGCA
GAGCTTCACGGGATTCTGGCCTCGATGTTGCTTCCGCTTTCCTCTCTTCC
TCCCTTCTCTTCGTCCTCTCCGTCAGTTGAAGATTGTGGCGCATTGTCTG
TTCCGGAGCTGCAGACACGAGCGGAACAACTTTTCCTCTTCCCGGAAGGA
GACGAGGGAGTCGGGGCCTTGTCCAACGCGGCGCTTGATGCCCGGACGAC
TTTTCCCTTCCATTGCTCCCCCTCGTCCTCACCCTCTTCATTTCCCTCAG
ACGTGGGTGCTGCTGAGGCGTCAACCTTGACGCGACGATGGCAGTTGCTG
ATGAAGGGGGGAGGGAGGGAGGGAGGAAAGGACGTTGGAGCGATGGTACC
CTCCTCGCTGACTGCACGTTGGCATAAATTGCTCATAGTGGGAGGAGGAG
GAGGAGGAGGAGGGAAAGGGGGGAATGTGGGTGCGGCCACGTCACCAGAG
ATGAAGGCACGATGGGGAAGGAGGGAGGGAGGGAAGGTGTGTTTGGGGGA
GGATGTTGGGGCGTGGGAGGTGCGGGAGTTGAGGGAGAGATGGATGGCGG
CGTCAGGAGGAGCTAAAGGATTAGTGGTGTGAGGAAGATGGAGTGTAAGA
GTCGGCGTGTGAGTGAGTCAGCGAGTGAGTAAGAAAGTCAGTGTGTTAGT
GAAAGAGTGAAAGAGTGAGGGAGTGACAGGTGTACAGATATTGCAAGAGA
AGAGACATGAAAATAAAACGGGCGGAATGCGACGAAGATGAAGTAGAAGG
AAAAGTCAGAAGCAGGAATGTGAAATGGAGGAAATGGGGTAGGAAGGAAG
AAGGGCAATAACGGTGGCTGCAGTGGGAGTTGAAGTAAACCGTTACAAGA
CTGACGTGTGATAAGGGCAACATTGAAAAACCGTCAATGGTATTCCTTTC
CTTGTGCGTCTCCCCTGCCACTCGCATTATCTTTACTCATTTATTTTCTT
CTTTCCGGTCCCTGCCCGCATACATCAAATGCCCTTGGTAAAAGGCTTCA
TAGTTGTTTCATTCAATACAGTCACTCACACATGGATGTATATATGTGTA
CGTATACATGTGTATATATATGCATACACGTTATCTCCCTGCTTTCCTCC
CTCCCTCA
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protein sequence of NO15G02450.1

>NO15G02450.1-protein ID=NO15G02450.1-protein|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=659bp
MTAATSSLWLVASNIQFHDDTALPVGSSTSLFAPPSSSSSSSSPPSSSAT
GTSTTTAADGQAEDGDTLEPQDDVFYLSRLNDPTTYFFQWICKRYRLTVK
PEPHSCPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTL
DPDVLRAQFQTQRFANLSWRLGKTRATPVFSKPSWEVLFSGGVGDAGIGG
EKCGGCSGAGGERRAPTPPFCEVEEEAATVAAAAAVVAEQDGKKGGKKGG
RYVGPDIGALPRRLLMRRAAKSVKRAFVTRDPDVGAAAAAKLKGRWVDLM
GGRDVGMAVLPAEVGAARAAELKRKWMELMGGREGGREGGIATLPPEVGA
MKAAELKGRWATLMGGRKGVTAVLPAEVGATRVEVMEDRWVGLMRGTVVE
GGKEGGVGAVRKEEMTRRWKELCRYAEGGREGGVGGWGEQELRSTWSALR
KGGKEEEEVGAKPSAELHGILASMLLPLSSLPPFSSSSPSVEDCGALSVP
ELQTRAEQLFLFPEGDEGVGALSNAALDARTTFPFHCSPSSSPSSFPSDV
GAAEASTLTRRWQLLMKGGGREGGKDVGAMVPSSLTARWHKLLIVGGGGG
GGGKGGNVGAATSPEMKARWGRREGGKVCLGEDVGAWEVRELRERWMAAS
GGAKGLVV*
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mRNA from alignment at chr15:671665..674411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02450.1 ID=NO15G02450.1|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2747bp|location=Sequence derived from alignment at chr15:671665..674411- (Nannochloropsis oceanica)
CAGATCCAAAAAAAGCAGCGGCAGCAGCCGGGGTGACGCGGGCGCAAGTC AAGGAATCTCCGCATCTGCGTTGCACCCACTGCGTAACCACACTACCACG CCACCATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATT CAGTTTCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTT CGCCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCG CCACTGGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGG GACACACTCGAGCCTCAGGACGATGTATTCTACCTAAGCCGTCTGAATGA CCCGACCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCG TCAAGCCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCAC CACATCCAGTTATCGTGCGGTACGTGGGATGACATGTATTCGGAGGGAAG AAGGGGTTGATAGGCATGTTTATGATAATGCTGAATACCTTGAATCTTGT CGGTGGGAGTGTCGTCCTGCTGATTCTTGTCCCCCCCCTTTTCCCCTCCG CATCACAGGCCACACTTTTTGCCGGCAATGCCTCAAAGCTGCCGCGGAGT GCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACACCCTGGATCCA GACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCGAATTTGAGCTG GCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAAACCGAGTTGGG AGGTGTTGTTTTCAGGAGGAGTGGGAGATGCAGGGATAGGGGGGGAGAAG TGTGGTGGTTGCTCTGGTGCGGGGGGGGAGCGGCGGGCGCCTACCCCGCC GTTTTGTGAGGTCGAGGAGGAAGCAGCCACAGTAGCAGCAGCAGCTGCGG TGGTGGCGGAGCAGGATGGGAAGAAGGGAGGGAAGAAGGGAGGAAGGTAT GTGGGACCGGACATTGGTGCGTTGCCCCGAAGGTTGTTAATGCGGAGAGC GGCCAAAAGTGTGAAGCGGGCGTTTGTAACAAGAGATCCGGATGTCGGAG CAGCCGCGGCCGCAAAGCTCAAGGGGAGGTGGGTTGATTTGATGGGAGGA AGGGATGTAGGGATGGCGGTGTTGCCTGCAGAGGTAGGGGCAGCACGGGC TGCAGAGCTGAAGAGGAAGTGGATGGAGTTGATGGGAGGGAGGGAGGGAG GGAGAGAAGGGGGGATTGCGACGTTGCCTCCGGAGGTGGGAGCCATGAAG GCAGCTGAACTGAAGGGACGATGGGCGACTCTGATGGGAGGGAGGAAGGG AGTGACGGCTGTGTTACCAGCTGAGGTGGGAGCGACGAGAGTGGAGGTGA TGGAGGATCGGTGGGTAGGATTGATGAGGGGGACGGTGGTGGAGGGGGGG AAGGAGGGAGGGGTAGGGGCAGTGAGGAAGGAGGAGATGACGAGAAGATG GAAGGAATTGTGTCGGTATGCGGAGGGAGGGAGGGAGGGAGGGGTTGGGG GGTGGGGGGAGCAGGAGTTGAGGTCGACGTGGTCGGCATTGAGGAAGGGA GGGAAGGAGGAGGAGGAGGTCGGTGCTAAGCCCTCGGCAGAGCTTCACGG GATTCTGGCCTCGATGTTGCTTCCGCTTTCCTCTCTTCCTCCCTTCTCTT CGTCCTCTCCGTCAGTTGAAGATTGTGGCGCATTGTCTGTTCCGGAGCTG CAGACACGAGCGGAACAACTTTTCCTCTTCCCGGAAGGAGACGAGGGAGT CGGGGCCTTGTCCAACGCGGCGCTTGATGCCCGGACGACTTTTCCCTTCC ATTGCTCCCCCTCGTCCTCACCCTCTTCATTTCCCTCAGACGTGGGTGCT GCTGAGGCGTCAACCTTGACGCGACGATGGCAGTTGCTGATGAAGGGGGG AGGGAGGGAGGGAGGAAAGGACGTTGGAGCGATGGTACCCTCCTCGCTGA CTGCACGTTGGCATAAATTGCTCATAGTGGGAGGAGGAGGAGGAGGAGGA GGGAAAGGGGGGAATGTGGGTGCGGCCACGTCACCAGAGATGAAGGCACG ATGGGGAAGGAGGGAGGGAGGGAAGGTGTGTTTGGGGGAGGATGTTGGGG CGTGGGAGGTGCGGGAGTTGAGGGAGAGATGGATGGCGGCGTCAGGAGGA GCTAAAGGATTAGTGGTGTGAGGAAGATGGAGTGTAAGAGTCGGCGTGTG AGTGAGTCAGCGAGTGAGTAAGAAAGTCAGTGTGTTAGTGAAAGAGTGAA AGAGTGAGGGAGTGACAGGTGTACAGATATTGCAAGAGAAGAGACATGAA AATAAAACGGGCGGAATGCGACGAAGATGAAGTAGAAGGAAAAGTCAGAA GCAGGAATGTGAAATGGAGGAAATGGGGTAGGAAGGAAGAAGGGCAATAA CGGTGGCTGCAGTGGGAGTTGAAGTAAACCGTTACAAGACTGACGTGTGA TAAGGGCAACATTGAAAAACCGTCAATGGTATTCCTTTCCTTGTGCGTCT CCCCTGCCACTCGCATTATCTTTACTCATTTATTTTCTTCTTTCCGGTCC CTGCCCGCATACATCAAATGCCCTTGGTAAAAGGCTTCATAGTTGTTTCA TTCAATACAGTCACTCACACATGGATGTATATATGTGTACGTATACATGT GTATATATATGCATACACGTTATCTCCCTGCTTTCCTCCCTCCCTCA
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Coding sequence (CDS) from alignment at chr15:671665..674411-

>NO15G02450.1 ID=NO15G02450.1|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=1977bp|location=Sequence derived from alignment at chr15:671665..674411- (Nannochloropsis oceanica)
ATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATTCAGTT
TCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTTCGCCC
CTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCGCCACT
GGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGGGACAC
ACTCGAGCCTCAGGACGATGTATTCTACCTAAGCCGTCTGAATGACCCGA
CCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCGTCAAG
CCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCACCACAT
CCAGTTATCGTGCGGCCACACTTTTTGCCGGCAATGCCTCAAAGCTGCCG
CGGAGTGCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACACCCTG
GATCCAGACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCGAATTT
GAGCTGGCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAAACCGA
GTTGGGAGGTGTTGTTTTCAGGAGGAGTGGGAGATGCAGGGATAGGGGGG
GAGAAGTGTGGTGGTTGCTCTGGTGCGGGGGGGGAGCGGCGGGCGCCTAC
CCCGCCGTTTTGTGAGGTCGAGGAGGAAGCAGCCACAGTAGCAGCAGCAG
CTGCGGTGGTGGCGGAGCAGGATGGGAAGAAGGGAGGGAAGAAGGGAGGA
AGGTATGTGGGACCGGACATTGGTGCGTTGCCCCGAAGGTTGTTAATGCG
GAGAGCGGCCAAAAGTGTGAAGCGGGCGTTTGTAACAAGAGATCCGGATG
TCGGAGCAGCCGCGGCCGCAAAGCTCAAGGGGAGGTGGGTTGATTTGATG
GGAGGAAGGGATGTAGGGATGGCGGTGTTGCCTGCAGAGGTAGGGGCAGC
ACGGGCTGCAGAGCTGAAGAGGAAGTGGATGGAGTTGATGGGAGGGAGGG
AGGGAGGGAGAGAAGGGGGGATTGCGACGTTGCCTCCGGAGGTGGGAGCC
ATGAAGGCAGCTGAACTGAAGGGACGATGGGCGACTCTGATGGGAGGGAG
GAAGGGAGTGACGGCTGTGTTACCAGCTGAGGTGGGAGCGACGAGAGTGG
AGGTGATGGAGGATCGGTGGGTAGGATTGATGAGGGGGACGGTGGTGGAG
GGGGGGAAGGAGGGAGGGGTAGGGGCAGTGAGGAAGGAGGAGATGACGAG
AAGATGGAAGGAATTGTGTCGGTATGCGGAGGGAGGGAGGGAGGGAGGGG
TTGGGGGGTGGGGGGAGCAGGAGTTGAGGTCGACGTGGTCGGCATTGAGG
AAGGGAGGGAAGGAGGAGGAGGAGGTCGGTGCTAAGCCCTCGGCAGAGCT
TCACGGGATTCTGGCCTCGATGTTGCTTCCGCTTTCCTCTCTTCCTCCCT
TCTCTTCGTCCTCTCCGTCAGTTGAAGATTGTGGCGCATTGTCTGTTCCG
GAGCTGCAGACACGAGCGGAACAACTTTTCCTCTTCCCGGAAGGAGACGA
GGGAGTCGGGGCCTTGTCCAACGCGGCGCTTGATGCCCGGACGACTTTTC
CCTTCCATTGCTCCCCCTCGTCCTCACCCTCTTCATTTCCCTCAGACGTG
GGTGCTGCTGAGGCGTCAACCTTGACGCGACGATGGCAGTTGCTGATGAA
GGGGGGAGGGAGGGAGGGAGGAAAGGACGTTGGAGCGATGGTACCCTCCT
CGCTGACTGCACGTTGGCATAAATTGCTCATAGTGGGAGGAGGAGGAGGA
GGAGGAGGGAAAGGGGGGAATGTGGGTGCGGCCACGTCACCAGAGATGAA
GGCACGATGGGGAAGGAGGGAGGGAGGGAAGGTGTGTTTGGGGGAGGATG
TTGGGGCGTGGGAGGTGCGGGAGTTGAGGGAGAGATGGATGGCGGCGTCA
GGAGGAGCTAAAGGATTAGTGGTGTGA
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Synonyms
Publications