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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr15 | genome | chr15:671665..674411 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO15G02450.1 vs.
Match: EWM22325.1 (putative zinc ring finger protein [Nannochloropsis gaditana]) HSP 1 Score: 370.5 bits (950), Expect = 1.000e-98 Identity = 260/521 (49.90%), Postives = 298/521 (57.20%), Query Frame = 0
Query: 1 MTAATSSLWLVASNIQFHDDTALP-VGSSTSLFAPPSSSSSSSSPPSSSATGTSTTTAADGQAEDGDTLEPQDDVFYLSRLNDPTTYFFQWICKRYRLTVKPEPHSCPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTLDPDVLRAQFQTQRFANLSWRLGKTRATPVFSKPSWEVLFSGGVGDAGIGGEKCGGCSGAGGERRAPTPPFCEVEEEAATVAAAAAVVAEQDGKKGGKKGGR-YVGPDIGALPRRLLMRRAAKSVKRAFVTRDPDVGAAAAAKLKGRWVDLMGGRDV-------GMAVLPAEVGAARAAELKRKW---MELMGGREGGREGGIATLPPE-------VGAMKAAELKGRWATLMGGRKGVTAVLPAEVGATRVEVMEDRWVGLMRGT---------------------------------VVEGGKEGGVGAVRKEEMTRRWKELCRYAEGGREG--GVGGWGEQELRSTWSALRKGGKEEEEVGAKPSAEL 468
M AAT SL+LVASNI F DD +LP G+ST L A ++ S SS P ++ TS AA EDGD LEPQDDVFYLSRLNDPTTYFFQWICKRY LTVK EPHSCPICLETS++ IQLSCGHTFCRQCLKAAAE MSSCALCRKSHTLDPDVLR QFQTQRFAN+SWRLG TRAT VFSKPSWE LF G G AG G KC G+R + P CE EA T + V + KGGK+ GR YVGPDIG LP RLLMRRAAKSV+RAFV+ DPDVG + A+L+ RW LMGG+ G+AVL E GA A L R+W E GG+ G + L + VG + A L W G AEVGA +V + W L+ T V++ + GVGA+ +EEM RW + C + GG +EL W L G EEVG KP A L
Sbjct: 1 MAAATESLFLVASNIHFSDDMSLPRFGTSTRLLA---ATCSCSSTPCAAHAATSVDQAA--SVEDGDALEPQDDVFYLSRLNDPTTYFFQWICKRYGLTVKAEPHSCPICLETSENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKPSWEALFCAGSGGAGNAG-KCD-----VGDR--ASSPSCEA-GEAPTGGGGSVGVTK---GKGGKETGRGYVGPDIGGLPHRLLMRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGKATDSKQWKGGVAVLTEEAGAESVAGLTRRWGRGREGQGGQTEGMGSRWSDLIRQGRGKEGGVGGEEQAALTAWWREARGQES-------AEVGAAKVPTLAAAWSLLVPETPGSLAPWAVPTTDCGGLSVAALKARAQRLFLPPVLDATSDAGVGALAREEMQARW-DACFLSSRATLPCLNAGGSDVEELAHRWGKL-MGVDVGEEVGGKPWAAL 495
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO15G02450.1 ID=NO15G02450.1|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp CAGATCCAAAAAAAGCAGCGGCAGCAGCCGGGGTGACGCGGGCGCAAGTC AAGGAATCTCCGCATCTGCGTTGCACCCACTGCGTAACCACACTACCACG CCACCATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATT CAGTTTCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTT CGCCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCG CCACTGGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGG GACACACTCGAGCCTCAGGACGATGTATTCTACCTAAGCCGTCTGAATGA CCCGACCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCG TCAAGCCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCAC CACATCCAGTTATCGTGCGGCCACACTTTTTGCCGGCAATGCCTCAAAGC TGCCGCGGAGTGCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACA CCCTGGATCCAGACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCG AATTTGAGCTGGCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAA ACCGAGTTGGGAGGTGTTGTTTTCAGGAGGAGTGGGAGATGCAGGGATAG GGGGGGAGAAGTGTGGTGGTTGCTCTGGTGCGGGGGGGGAGCGGCGGGCG CCTACCCCGCCGTTTTGTGAGGTCGAGGAGGAAGCAGCCACAGTAGCAGC AGCAGCTGCGGTGGTGGCGGAGCAGGATGGGAAGAAGGGAGGGAAGAAGG GAGGAAGGTATGTGGGACCGGACATTGGTGCGTTGCCCCGAAGGTTGTTA ATGCGGAGAGCGGCCAAAAGTGTGAAGCGGGCGTTTGTAACAAGAGATCC GGATGTCGGAGCAGCCGCGGCCGCAAAGCTCAAGGGGAGGTGGGTTGATT TGATGGGAGGAAGGGATGTAGGGATGGCGGTGTTGCCTGCAGAGGTAGGG GCAGCACGGGCTGCAGAGCTGAAGAGGAAGTGGATGGAGTTGATGGGAGG GAGGGAGGGAGGGAGAGAAGGGGGGATTGCGACGTTGCCTCCGGAGGTGG GAGCCATGAAGGCAGCTGAACTGAAGGGACGATGGGCGACTCTGATGGGA GGGAGGAAGGGAGTGACGGCTGTGTTACCAGCTGAGGTGGGAGCGACGAG AGTGGAGGTGATGGAGGATCGGTGGGTAGGATTGATGAGGGGGACGGTGG TGGAGGGGGGGAAGGAGGGAGGGGTAGGGGCAGTGAGGAAGGAGGAGATG ACGAGAAGATGGAAGGAATTGTGTCGGTATGCGGAGGGAGGGAGGGAGGG AGGGGTTGGGGGGTGGGGGGAGCAGGAGTTGAGGTCGACGTGGTCGGCAT TGAGGAAGGGAGGGAAGGAGGAGGAGGAGGTCGGTGCTAAGCCCTCGGCA GAGCTTCACGGGATTCTGGCCTCGATGTTGCTTCCGCTTTCCTCTCTTCC TCCCTTCTCTTCGTCCTCTCCGTCAGTTGAAGATTGTGGCGCATTGTCTG TTCCGGAGCTGCAGACACGAGCGGAACAACTTTTCCTCTTCCCGGAAGGA GACGAGGGAGTCGGGGCCTTGTCCAACGCGGCGCTTGATGCCCGGACGAC TTTTCCCTTCCATTGCTCCCCCTCGTCCTCACCCTCTTCATTTCCCTCAG ACGTGGGTGCTGCTGAGGCGTCAACCTTGACGCGACGATGGCAGTTGCTG ATGAAGGGGGGAGGGAGGGAGGGAGGAAAGGACGTTGGAGCGATGGTACC CTCCTCGCTGACTGCACGTTGGCATAAATTGCTCATAGTGGGAGGAGGAG GAGGAGGAGGAGGGAAAGGGGGGAATGTGGGTGCGGCCACGTCACCAGAG ATGAAGGCACGATGGGGAAGGAGGGAGGGAGGGAAGGTGTGTTTGGGGGA GGATGTTGGGGCGTGGGAGGTGCGGGAGTTGAGGGAGAGATGGATGGCGG CGTCAGGAGGAGCTAAAGGATTAGTGGTGTGAGGAAGATGGAGTGTAAGA GTCGGCGTGTGAGTGAGTCAGCGAGTGAGTAAGAAAGTCAGTGTGTTAGT GAAAGAGTGAAAGAGTGAGGGAGTGACAGGTGTACAGATATTGCAAGAGA AGAGACATGAAAATAAAACGGGCGGAATGCGACGAAGATGAAGTAGAAGG AAAAGTCAGAAGCAGGAATGTGAAATGGAGGAAATGGGGTAGGAAGGAAG AAGGGCAATAACGGTGGCTGCAGTGGGAGTTGAAGTAAACCGTTACAAGA CTGACGTGTGATAAGGGCAACATTGAAAAACCGTCAATGGTATTCCTTTC CTTGTGCGTCTCCCCTGCCACTCGCATTATCTTTACTCATTTATTTTCTT CTTTCCGGTCCCTGCCCGCATACATCAAATGCCCTTGGTAAAAGGCTTCA TAGTTGTTTCATTCAATACAGTCACTCACACATGGATGTATATATGTGTA CGTATACATGTGTATATATATGCATACACGTTATCTCCCTGCTTTCCTCC CTCCCTCA back to topprotein sequence of NO15G02450.1 >NO15G02450.1-protein ID=NO15G02450.1-protein|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=659bp MTAATSSLWLVASNIQFHDDTALPVGSSTSLFAPPSSSSSSSSPPSSSAT GTSTTTAADGQAEDGDTLEPQDDVFYLSRLNDPTTYFFQWICKRYRLTVK PEPHSCPICLETSDHHIQLSCGHTFCRQCLKAAAECNMSSCALCRKSHTL DPDVLRAQFQTQRFANLSWRLGKTRATPVFSKPSWEVLFSGGVGDAGIGG EKCGGCSGAGGERRAPTPPFCEVEEEAATVAAAAAVVAEQDGKKGGKKGG RYVGPDIGALPRRLLMRRAAKSVKRAFVTRDPDVGAAAAAKLKGRWVDLM GGRDVGMAVLPAEVGAARAAELKRKWMELMGGREGGREGGIATLPPEVGA MKAAELKGRWATLMGGRKGVTAVLPAEVGATRVEVMEDRWVGLMRGTVVE GGKEGGVGAVRKEEMTRRWKELCRYAEGGREGGVGGWGEQELRSTWSALR KGGKEEEEVGAKPSAELHGILASMLLPLSSLPPFSSSSPSVEDCGALSVP ELQTRAEQLFLFPEGDEGVGALSNAALDARTTFPFHCSPSSSPSSFPSDV GAAEASTLTRRWQLLMKGGGREGGKDVGAMVPSSLTARWHKLLIVGGGGG GGGKGGNVGAATSPEMKARWGRREGGKVCLGEDVGAWEVRELRERWMAAS GGAKGLVV* back to topmRNA from alignment at chr15:671665..674411- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO15G02450.1 ID=NO15G02450.1|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2747bp|location=Sequence derived from alignment at chr15:671665..674411- (Nannochloropsis oceanica) CAGATCCAAAAAAAGCAGCGGCAGCAGCCGGGGTGACGCGGGCGCAAGTC
AAGGAATCTCCGCATCTGCGTTGCACCCACTGCGTAACCACACTACCACG
CCACCATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATT
CAGTTTCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTT
CGCCCCTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCG
CCACTGGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGG
GACACACTCGAGCCTCAGGACGATGTATTCTACCTAAGCCGTCTGAATGA
CCCGACCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCG
TCAAGCCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCAC
CACATCCAGTTATCGTGCGGTACGTGGGATGACATGTATTCGGAGGGAAG
AAGGGGTTGATAGGCATGTTTATGATAATGCTGAATACCTTGAATCTTGT
CGGTGGGAGTGTCGTCCTGCTGATTCTTGTCCCCCCCCTTTTCCCCTCCG
CATCACAGGCCACACTTTTTGCCGGCAATGCCTCAAAGCTGCCGCGGAGT
GCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACACCCTGGATCCA
GACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCGAATTTGAGCTG
GCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAAACCGAGTTGGG
AGGTGTTGTTTTCAGGAGGAGTGGGAGATGCAGGGATAGGGGGGGAGAAG
TGTGGTGGTTGCTCTGGTGCGGGGGGGGAGCGGCGGGCGCCTACCCCGCC
GTTTTGTGAGGTCGAGGAGGAAGCAGCCACAGTAGCAGCAGCAGCTGCGG
TGGTGGCGGAGCAGGATGGGAAGAAGGGAGGGAAGAAGGGAGGAAGGTAT
GTGGGACCGGACATTGGTGCGTTGCCCCGAAGGTTGTTAATGCGGAGAGC
GGCCAAAAGTGTGAAGCGGGCGTTTGTAACAAGAGATCCGGATGTCGGAG
CAGCCGCGGCCGCAAAGCTCAAGGGGAGGTGGGTTGATTTGATGGGAGGA
AGGGATGTAGGGATGGCGGTGTTGCCTGCAGAGGTAGGGGCAGCACGGGC
TGCAGAGCTGAAGAGGAAGTGGATGGAGTTGATGGGAGGGAGGGAGGGAG
GGAGAGAAGGGGGGATTGCGACGTTGCCTCCGGAGGTGGGAGCCATGAAG
GCAGCTGAACTGAAGGGACGATGGGCGACTCTGATGGGAGGGAGGAAGGG
AGTGACGGCTGTGTTACCAGCTGAGGTGGGAGCGACGAGAGTGGAGGTGA
TGGAGGATCGGTGGGTAGGATTGATGAGGGGGACGGTGGTGGAGGGGGGG
AAGGAGGGAGGGGTAGGGGCAGTGAGGAAGGAGGAGATGACGAGAAGATG
GAAGGAATTGTGTCGGTATGCGGAGGGAGGGAGGGAGGGAGGGGTTGGGG
GGTGGGGGGAGCAGGAGTTGAGGTCGACGTGGTCGGCATTGAGGAAGGGA
GGGAAGGAGGAGGAGGAGGTCGGTGCTAAGCCCTCGGCAGAGCTTCACGG
GATTCTGGCCTCGATGTTGCTTCCGCTTTCCTCTCTTCCTCCCTTCTCTT
CGTCCTCTCCGTCAGTTGAAGATTGTGGCGCATTGTCTGTTCCGGAGCTG
CAGACACGAGCGGAACAACTTTTCCTCTTCCCGGAAGGAGACGAGGGAGT
CGGGGCCTTGTCCAACGCGGCGCTTGATGCCCGGACGACTTTTCCCTTCC
ATTGCTCCCCCTCGTCCTCACCCTCTTCATTTCCCTCAGACGTGGGTGCT
GCTGAGGCGTCAACCTTGACGCGACGATGGCAGTTGCTGATGAAGGGGGG
AGGGAGGGAGGGAGGAAAGGACGTTGGAGCGATGGTACCCTCCTCGCTGA
CTGCACGTTGGCATAAATTGCTCATAGTGGGAGGAGGAGGAGGAGGAGGA
GGGAAAGGGGGGAATGTGGGTGCGGCCACGTCACCAGAGATGAAGGCACG
ATGGGGAAGGAGGGAGGGAGGGAAGGTGTGTTTGGGGGAGGATGTTGGGG
CGTGGGAGGTGCGGGAGTTGAGGGAGAGATGGATGGCGGCGTCAGGAGGA
GCTAAAGGATTAGTGGTGTGAGGAAGATGGAGTGTAAGAGTCGGCGTGTG
AGTGAGTCAGCGAGTGAGTAAGAAAGTCAGTGTGTTAGTGAAAGAGTGAA
AGAGTGAGGGAGTGACAGGTGTACAGATATTGCAAGAGAAGAGACATGAA
AATAAAACGGGCGGAATGCGACGAAGATGAAGTAGAAGGAAAAGTCAGAA
GCAGGAATGTGAAATGGAGGAAATGGGGTAGGAAGGAAGAAGGGCAATAA
CGGTGGCTGCAGTGGGAGTTGAAGTAAACCGTTACAAGACTGACGTGTGA
TAAGGGCAACATTGAAAAACCGTCAATGGTATTCCTTTCCTTGTGCGTCT
CCCCTGCCACTCGCATTATCTTTACTCATTTATTTTCTTCTTTCCGGTCC
CTGCCCGCATACATCAAATGCCCTTGGTAAAAGGCTTCATAGTTGTTTCA
TTCAATACAGTCACTCACACATGGATGTATATATGTGTACGTATACATGT
GTATATATATGCATACACGTTATCTCCCTGCTTTCCTCCCTCCCTCA back to topCoding sequence (CDS) from alignment at chr15:671665..674411- >NO15G02450.1 ID=NO15G02450.1|Name=NO15G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=1977bp|location=Sequence derived from alignment at chr15:671665..674411- (Nannochloropsis oceanica) ATGACGGCCGCCACTAGCTCCTTATGGCTGGTCGCCTCGAACATTCAGTT TCATGACGATACGGCGCTGCCCGTGGGTAGTAGCACCAGCCTGTTCGCCC CTCCTTCCTCTTCCTCCTCTTCCTCCTCTCCTCCCTCTTCCTCCGCCACT GGCACATCCACCACCACTGCCGCAGACGGTCAAGCTGAAGATGGGGACAC ACTCGAGCCTCAGGACGATGTATTCTACCTAAGCCGTCTGAATGACCCGA CCACATACTTTTTCCAATGGATCTGCAAGCGGTATCGACTTACCGTCAAG CCCGAGCCCCATTCCTGCCCCATTTGCTTGGAAACTTCGGACCACCACAT CCAGTTATCGTGCGGCCACACTTTTTGCCGGCAATGCCTCAAAGCTGCCG CGGAGTGCAACATGTCCTCATGTGCCTTGTGTCGCAAAAGTCACACCCTG GATCCAGACGTATTGCGTGCGCAGTTTCAGACGCAACGGTTCGCGAATTT GAGCTGGCGGTTGGGCAAGACAAGGGCGACCCCTGTCTTTTCGAAACCGA GTTGGGAGGTGTTGTTTTCAGGAGGAGTGGGAGATGCAGGGATAGGGGGG GAGAAGTGTGGTGGTTGCTCTGGTGCGGGGGGGGAGCGGCGGGCGCCTAC CCCGCCGTTTTGTGAGGTCGAGGAGGAAGCAGCCACAGTAGCAGCAGCAG CTGCGGTGGTGGCGGAGCAGGATGGGAAGAAGGGAGGGAAGAAGGGAGGA AGGTATGTGGGACCGGACATTGGTGCGTTGCCCCGAAGGTTGTTAATGCG GAGAGCGGCCAAAAGTGTGAAGCGGGCGTTTGTAACAAGAGATCCGGATG TCGGAGCAGCCGCGGCCGCAAAGCTCAAGGGGAGGTGGGTTGATTTGATG GGAGGAAGGGATGTAGGGATGGCGGTGTTGCCTGCAGAGGTAGGGGCAGC ACGGGCTGCAGAGCTGAAGAGGAAGTGGATGGAGTTGATGGGAGGGAGGG AGGGAGGGAGAGAAGGGGGGATTGCGACGTTGCCTCCGGAGGTGGGAGCC ATGAAGGCAGCTGAACTGAAGGGACGATGGGCGACTCTGATGGGAGGGAG GAAGGGAGTGACGGCTGTGTTACCAGCTGAGGTGGGAGCGACGAGAGTGG AGGTGATGGAGGATCGGTGGGTAGGATTGATGAGGGGGACGGTGGTGGAG GGGGGGAAGGAGGGAGGGGTAGGGGCAGTGAGGAAGGAGGAGATGACGAG AAGATGGAAGGAATTGTGTCGGTATGCGGAGGGAGGGAGGGAGGGAGGGG TTGGGGGGTGGGGGGAGCAGGAGTTGAGGTCGACGTGGTCGGCATTGAGG AAGGGAGGGAAGGAGGAGGAGGAGGTCGGTGCTAAGCCCTCGGCAGAGCT TCACGGGATTCTGGCCTCGATGTTGCTTCCGCTTTCCTCTCTTCCTCCCT TCTCTTCGTCCTCTCCGTCAGTTGAAGATTGTGGCGCATTGTCTGTTCCG GAGCTGCAGACACGAGCGGAACAACTTTTCCTCTTCCCGGAAGGAGACGA GGGAGTCGGGGCCTTGTCCAACGCGGCGCTTGATGCCCGGACGACTTTTC CCTTCCATTGCTCCCCCTCGTCCTCACCCTCTTCATTTCCCTCAGACGTG GGTGCTGCTGAGGCGTCAACCTTGACGCGACGATGGCAGTTGCTGATGAA GGGGGGAGGGAGGGAGGGAGGAAAGGACGTTGGAGCGATGGTACCCTCCT CGCTGACTGCACGTTGGCATAAATTGCTCATAGTGGGAGGAGGAGGAGGA GGAGGAGGGAAAGGGGGGAATGTGGGTGCGGCCACGTCACCAGAGATGAA GGCACGATGGGGAAGGAGGGAGGGAGGGAAGGTGTGTTTGGGGGAGGATG TTGGGGCGTGGGAGGTGCGGGAGTTGAGGGAGAGATGGATGGCGGCGTCA GGAGGAGCTAAAGGATTAGTGGTGTGA back to top
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