NO15G02430, NO15G02430 (gene) Nannochloropsis oceanica

Overview
NameNO15G02430
Unique NameNO15G02430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length264
Alignment locationchr15:668970..669233 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:668970..669233 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G02430 vs. NCBI_GenBank
Match: GAY03719.1 (Hypothetical protein PINS_011540 [Pythium insidiosum])

HSP 1 Score: 63.5 bits (153), Expect = 3.700e-7
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:    4 FFLRIANYIANELIVKGLANNRSFQRFALRTADHVEKAKITGAAHSEKIAKEAEKQVGVAGRFLGAFQKEIEKDMKK 81
            FF R+ +Y+ N++ VK LAN+R+FQRFAL+T  HVE AK   +  +E ++   +K       F  A + EI +D+KK
Sbjct:    3 FFQRLVSYVVNDVAVKTLANSRAFQRFALKTHYHVEDAKHLASTGAESLSSAIQKNAPKVKEFASALKDEIARDLKK 79
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BLAST of NO15G02430 vs. NCBI_GenBank
Match: XP_024578026.1 (hypothetical protein PHALS_14552 [Plasmopara halstedii] >CEG41657.1 hypothetical protein PHALS_14552 [Plasmopara halstedii])

HSP 1 Score: 62.4 bits (150), Expect = 8.100e-7
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 0 
Query:    1 MSGFFLRIANYIANELIVKGLANNRSFQRFALRTADHVEKAKITGAAHSEKIAKEAEKQVGVAGRFLGAFQKEIEKDMKK 81
            +  FF R+ +Y+ N++ VK L+N+R+FQRFAL+T  HVE AK   +  ++ + K  E        F  AF++E+ +D+KK
Sbjct:   20 LMSFFQRLVSYVINDVAVKALSNSRAFQRFALKTHYHVEDAKHMASTGADVLKKSIETYAPKVKEFGEAFREEVARDLKK 99
The following BLAST results are available for this feature:
BLAST of NO15G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
GAY03719.13.700e-741.56Hypothetical protein PINS_011540 [Pythium insidios... [more]
XP_024578026.18.100e-738.75hypothetical protein PHALS_14552 [Plasmopara halst... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL141nonsL141Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR064ngnoR064Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001310NSK001310Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02430.1NO15G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527739gene_4801Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02430.1NO15G02430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02430 ID=NO15G02430|Name=NO15G02430|organism=Nannochloropsis oceanica|type=gene|length=264bp
ATGTCCGGATTCTTTCTTCGTATTGCCAACTACATCGCGAACGAATTGAT
CGTCAAAGGACTGGCCAACAATCGGTCCTTCCAACGCTTTGCTTTGCGTA
CGGCGGATCACGTCGAGAAGGCCAAGATCACAGGAGCCGCTCACAGTGAA
AAGATTGCCAAGGAGGCAGAGAAGCAGGTGGGGGTGGCTGGACGGTTTTT
AGGGGCTTTTCAGAAGGAGATCGAAAAGGACATGAAAAAATTTTCACAAT
CAAGAAGGAAGTAG
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protein sequence of NO15G02430.1

>NO15G02430.1-protein ID=NO15G02430.1-protein|Name=NO15G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MSGFFLRIANYIANELIVKGLANNRSFQRFALRTADHVEKAKITGAAHSE
KIAKEAEKQVGVAGRFLGAFQKEIEKDMKKFSQSRRK*
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Synonyms
Publications