NO15G02430.1, NO15G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02430.1
Unique NameNO15G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length264
Alignment locationchr15:668970..669233 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:668970..669233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02430.1 vs.
Match: GAY03719.1 (Hypothetical protein PINS_011540 [Pythium insidiosum])

HSP 1 Score: 63.5 bits (153), Expect = 3.700e-7
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0 
Query:    4 FFLRIANYIANELIVKGLANNRSFQRFALRTADHVEKAKITGAAHSEKIAKEAEKQVGVAGRFLGAFQKEIEKDMKK 81
            FF R+ +Y+ N++ VK LAN+R+FQRFAL+T  HVE AK   +  +E ++   +K       F  A + EI +D+KK
Sbjct:    3 FFQRLVSYVVNDVAVKTLANSRAFQRFALKTHYHVEDAKHLASTGAESLSSAIQKNAPKVKEFASALKDEIARDLKK 79
The following BLAST results are available for this feature:
BLAST of NO15G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAY03719.13.700e-741.56Hypothetical protein PINS_011540 [Pythium insidios... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02430NO15G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02430.1NO15G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02430.1.cds1NO15G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02430.1 ID=NO15G02430.1|Name=NO15G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=264bp
ATGTCCGGATTCTTTCTTCGTATTGCCAACTACATCGCGAACGAATTGAT
CGTCAAAGGACTGGCCAACAATCGGTCCTTCCAACGCTTTGCTTTGCGTA
CGGCGGATCACGTCGAGAAGGCCAAGATCACAGGAGCCGCTCACAGTGAA
AAGATTGCCAAGGAGGCAGAGAAGCAGGTGGGGGTGGCTGGACGGTTTTT
AGGGGCTTTTCAGAAGGAGATCGAAAAGGACATGAAAAAATTTTCACAAT
CAAGAAGGAAGTAG
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protein sequence of NO15G02430.1

>NO15G02430.1-protein ID=NO15G02430.1-protein|Name=NO15G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MSGFFLRIANYIANELIVKGLANNRSFQRFALRTADHVEKAKITGAAHSE
KIAKEAEKQVGVAGRFLGAFQKEIEKDMKKFSQSRRK*
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mRNA from alignment at chr15:668970..669233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02430.1 ID=NO15G02430.1|Name=NO15G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=264bp|location=Sequence derived from alignment at chr15:668970..669233- (Nannochloropsis oceanica)
ATGTCCGGATTCTTTCTTCGTATTGCCAACTACATCGCGAACGAATTGAT
CGTCAAAGGACTGGCCAACAATCGGTCCTTCCAACGCTTTGCTTTGCGTA
CGGCGGATCACGTCGAGAAGGCCAAGATCACAGGAGCCGCTCACAGTGAA
AAGATTGCCAAGGAGGCAGAGAAGCAGGTGGGGGTGGCTGGACGGTTTTT
AGGGGCTTTTCAGAAGGAGATCGAAAAGGACATGAAAAAATTTTCACAAT
CAAGAAGGAAGTAG
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Coding sequence (CDS) from alignment at chr15:668970..669233-

>NO15G02430.1 ID=NO15G02430.1|Name=NO15G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at chr15:668970..669233- (Nannochloropsis oceanica)
ATGTCCGGATTCTTTCTTCGTATTGCCAACTACATCGCGAACGAATTGAT
CGTCAAAGGACTGGCCAACAATCGGTCCTTCCAACGCTTTGCTTTGCGTA
CGGCGGATCACGTCGAGAAGGCCAAGATCACAGGAGCCGCTCACAGTGAA
AAGATTGCCAAGGAGGCAGAGAAGCAGGTGGGGGTGGCTGGACGGTTTTT
AGGGGCTTTTCAGAAGGAGATCGAAAAGGACATGAAAAAATTTTCACAAT
CAAGAAGGAAGTAG
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Synonyms
Publications