NO15G02350, NO15G02350 (gene) Nannochloropsis oceanica

Overview
NameNO15G02350
Unique NameNO15G02350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length651
Alignment locationchr15:650378..651028 +

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Properties
Property NameValue
DescriptionSignal recognition particle protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:650378..651028 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
GO:00083127S RNA binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR036891Signal_recog_part_SRP54_M_sf
IPR022941SRP54
IPR004780SRP_Ffh
IPR004125Signal_recog_particle_SRP54_M
Homology
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: EWM22370.1 (signal recognition particle protein [Nannochloropsis gaditana])

HSP 1 Score: 295.0 bits (754), Expect = 1.800e-76
Identity = 147/182 (80.77%), Postives = 167/182 (91.76%), Query Frame = 0 
Query:   35 VRHSTIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAMDNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQRRASRRGSRLPF 217
            VRHST+WR VQ AIQER+ +KEEEQFQ+EL RLASMT+YDLR FKEA+D     SWFSWVNKVPGVRSMPEV +GERY+KILGA TEEEL++PE IKSREKQRVATQSGES+QEINLLL+LYENSQ+LHKWVRRRVADKKE+PKT+SECQVLMMGDPAG+SV AMQQKQQ+RA ++G+RLPF
Sbjct:   68 VRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDK-PGNSWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF 248
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BLAST of NO15G02350 vs. NCBI_GenBank
Match: GAX92266.1 (Hypothetical protein PINS_000172 [Pythium insidiosum])

HSP 1 Score: 97.8 bits (242), Expect = 4.300e-17
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAM-DNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQR 206
            S+I   V   +Q+R   K+ E ++ ++  LAS +K+DL  F E +  NA+      W   +PGV  M  V   + +  IL A+  +   NP LI  + K+++  + G S +EIN ++  YE   +LH+W+ +RV     LP+T  E Q L+  DP G      + KQ+R
Sbjct:   47 SSIRDTVTQKMQDRNDEKQAEAYRQQIQDLASSSKFDLNTFHEQLKKNADASGLNGWKGMIPGVNEMTAVQQMKAFMSILEAIEPQFRENPYLINGKVKRKITEKCGHSAEEINNMIRQYEQMSALHQWLSKRVQRGLPLPETYQETQDLIREDPTGFPAHKFRMKQRR 215
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: XP_008893140.1 (hypothetical protein PPTG_01561 [Phytophthora parasitica INRA-310] >ETI45351.1 hypothetical protein F443_10078 [Phytophthora parasitica P1569] >ETK85274.1 hypothetical protein L915_09872 [Phytophthora parasitica] >ETL38701.1 hypothetical protein L916_09781 [Phytophthora parasitica] >ETL91822.1 hypothetical protein L917_09699 [Phytophthora parasitica] >ETM45144.1 hypothetical protein L914_09748 [Phytophthora parasitica] >ETN21339.1 hypothetical protein PPTG_01561 [Phytophthora parasitica INRA-310] >ETP15167.1 hypothetical protein F441_10021 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 97.1 bits (240), Expect = 7.400e-17
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAM-DNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQR 206
            S I + V G ++ER   K+EE ++ ++  L+   K+DL  F + +  NAE      W + +PGV SM  V   + +  IL ++  E   NP LI  + K++++ ++G S ++IN +L  YE   +LH W+ +RV     +P+T  E   L+  DP G      + KQ+R
Sbjct:   48 SNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: ETP43192.1 (hypothetical protein F442_09990 [Phytophthora parasitica P10297])

HSP 1 Score: 97.1 bits (240), Expect = 7.400e-17
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAM-DNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQR 206
            S I + V G ++ER   K+EE ++ ++  L+   K+DL  F + +  NAE      W + +PGV SM  V   + +  IL ++  E   NP LI  + K++++ ++G S ++IN +L  YE   +LH W+ +RV     +P+T  E   L+  DP G      + KQ+R
Sbjct:   48 SNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: POM80882.1 (Hypothetical protein PHPALM_1224 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 97.1 bits (240), Expect = 7.400e-17
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAM-DNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQR 206
            S I   V G ++ER   K+EE ++ ++  L+   K+DL  F + +  NAE      W + +PGV SM  V   + +  IL  +  E   NP LI  + K+++  ++G S +EIN +L  YE   +LH W+ +RV     +P+T  E   L+  DP G      + KQ+R
Sbjct:   44 SNIKNTVSGKLEERNQHKQEEAYKQQMIDLSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILETMEPEYRENPRLINGKTKRKICEKAGHSPEEINNMLRNYEQLSALHIWLVKRVERGLRIPETLDETTELVREDPTGFPTKKFRMKQRR 212
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: POM81035.1 (Hypothetical protein PHPALM_1055 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 97.1 bits (240), Expect = 7.400e-17
Identity = 55/169 (32.54%), Postives = 87/169 (51.48%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAM-DNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQR 206
            S I   V G ++ER   K+EE ++ ++  L+   K+DL  F + +  NAE      W + +PGV SM  V   + +  IL  +  E   NP LI  + K+++  ++G S +EIN +L  YE   +LH W+ +RV     +P+T  E   L+  DP G      + KQ+R
Sbjct:   44 SNIKNTVSGKLEERNQHKQEEAYKQQMIDLSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILETMEPEYRENPRLINGKTKRKICEKAGHSPEEINNMLRNYEQLSALHIWLVKRVERGLRIPETLDETTELVRQDPTGFPTKKFRMKQRR 212
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: XP_002907919.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61002.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 95.5 bits (236), Expect = 2.100e-16
Identity = 53/169 (31.36%), Postives = 90/169 (53.25%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAM-DNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQR 206
            S I + V G ++ER   K+EE ++ ++  L+   K+DL  F + +  NAE      W + +PGV SM  V   + +  IL ++  E   +P LI  + K++++ ++G S ++IN +L  YE   +LH W+ +RV     +P+T  E   L+  DP G      + KQ+R
Sbjct:   49 SNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMDILESMEPEYRESPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHVWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 217
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: ETO73993.1 (hypothetical protein F444_10176 [Phytophthora parasitica P1976])

HSP 1 Score: 94.4 bits (233), Expect = 4.800e-16
Identity = 53/169 (31.36%), Postives = 89/169 (52.66%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAM-DNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQR 206
            S I + V G ++ER   K+EE ++ ++  L+   K+DL  F + +  NAE      W + +PGV SM  V   + +  IL ++  E   NP LI  + K++++ ++  S ++IN +L  YE   +LH W+ +RV     +P+T  E   L+  DP G      + KQ+R
Sbjct:   48 SNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKADHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTGFPARKFRMKQRR 216
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: KUF67209.1 (chorismate mutase [Phytophthora nicotianae])

HSP 1 Score: 92.4 bits (228), Expect = 1.800e-15
Identity = 51/157 (32.48%), Postives = 85/157 (54.14%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAM-DNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAG 194
            S I + V G ++ER   K+EE ++ ++  L+   K+DL  F + +  NAE      W + +PGV SM  V   + +  IL ++  E   NP LI  + K++++ ++G S ++IN +L  YE   +LH W+ +RV     +P+T  E   L+  DP G
Sbjct:   48 SNIKKTVSGKLEERNQHKQEEAYKQQMIELSQKDKFDLNGFYDHLKKNAEASGASGWRSMIPGVSSMTAVQQMKTFMAILESMEPEYRENPRLINGKIKRKISEKAGHSPEDINNMLRNYEQLSALHIWLVKRVERGLSIPETLDETTELVRQDPTG 204
[Close]
BLAST of NO15G02350 vs. NCBI_GenBank
Match: XP_024571671.1 (chorismate mutase [Plasmopara halstedii] >CEG35302.1 chorismate mutase [Plasmopara halstedii])

HSP 1 Score: 90.9 bits (224), Expect = 5.300e-15
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 0 
Query:   38 STIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAF-KEAMDNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQR 206
            S I + V G ++ER   K+ E ++ ++  L+   K+DL  F      NAE      W   +PGV SM  V   + +  IL ++  E L +P LI  + K++++ ++G S ++IN +L  YE   +LH W+ +R      +P+T  E   ++  DP G      + KQ+R
Sbjct:   48 SNIKKTVSGKLEERNQHKQGEAYKQQMIELSQQEKFDLNGFYAHLKKNAEASGASGWRAMIPGVSSMTAVQQMKMFMTILESMEPEYLESPRLINGKVKRKISEKTGHSPEDINNMLRNYEQLSALHIWLVKRAERGLSIPETIDETTEMVRQDPTGFPAKKFRMKQRR 216
The following BLAST results are available for this feature:
BLAST of NO15G02350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22370.11.800e-7680.77signal recognition particle protein [Nannochlorops... [more]
GAX92266.14.300e-1732.54Hypothetical protein PINS_000172 [Pythium insidios... [more]
XP_008893140.17.400e-1731.95hypothetical protein PPTG_01561 [Phytophthora para... [more]
ETP43192.17.400e-1731.95hypothetical protein F442_09990 [Phytophthora para... [more]
POM80882.17.400e-1732.54Hypothetical protein PHPALM_1224 [Phytophthora pal... [more]
POM81035.17.400e-1732.54Hypothetical protein PHPALM_1055 [Phytophthora pal... [more]
XP_002907919.12.100e-1631.36conserved hypothetical protein [Phytophthora infes... [more]
ETO73993.14.800e-1631.36hypothetical protein F444_10176 [Phytophthora para... [more]
KUF67209.11.800e-1532.48chorismate mutase [Phytophthora nicotianae][more]
XP_024571671.15.300e-1530.18chorismate mutase [Plasmopara halstedii] >CEG35302... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001362NSK001362Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02350.1NO15G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587914gene_4792Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100066g27gene8077Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02350.1NO15G02350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02350 ID=NO15G02350|Name=NO15G02350|organism=Nannochloropsis oceanica|type=gene|length=651bp
ATGCTGCCAGTCGTGCGACGCACCGCCCGGGCCTTGCCCTTGCTAATGCC
CCCCCGCCTTTCCCCCACGACCACGCCCACGTCGACCAGCACCATTATAG
CCGTTCGACACTCCACCATCTGGCGAAAGGTGCAAGGTGCGATTCAAGAG
CGGCAAGGCACCAAGGAAGAGGAGCAGTTCCAGTCGGAGCTCACCCGCTT
GGCAAGTATGACCAAGTACGACTTACGGGCTTTCAAAGAAGCCATGGACA
ACGCGGAGAAGGGCTCATGGTTTTCGTGGGTGAACAAGGTGCCTGGCGTG
AGGAGCATGCCGGAGGTAATGATGGGGGAAAGGTACAAGAAGATTTTGGG
GGCGCTGACGGAGGAAGAACTGTCCAACCCAGAGCTGATTAAGTCGCGGG
AGAAGCAACGCGTGGCCACGCAGAGTGGAGAGTCGGTGCAGGAGATCAAT
TTGTTACTGAATTTATACGAGAACTCACAGTCGCTGCACAAATGGGTGCG
GCGGCGCGTGGCGGACAAGAAGGAACTGCCCAAGACGAGAAGTGAATGTC
AGGTATTGATGATGGGGGACCCGGCAGGTATTTCCGTGAGTGCGATGCAG
CAGAAACAGCAACGACGAGCCTCGCGACGAGGGAGCCGGTTGCCGTTTTA
G
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protein sequence of NO15G02350.1

>NO15G02350.1-protein ID=NO15G02350.1-protein|Name=NO15G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MLPVVRRTARALPLLMPPRLSPTTTPTSTSTIIAVRHSTIWRKVQGAIQE
RQGTKEEEQFQSELTRLASMTKYDLRAFKEAMDNAEKGSWFSWVNKVPGV
RSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEIN
LLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQ
QKQQRRASRRGSRLPF*
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Synonyms
Publications