NO15G02350.1, NO15G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02350.1
Unique NameNO15G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length651
Alignment locationchr15:650378..651028 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:650378..651028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02350.1 vs.
Match: EWM22370.1 (signal recognition particle protein [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 3.100e-76
Identity = 147/182 (80.77%), Postives = 167/182 (91.76%), Query Frame = 0 
Query:   35 VRHSTIWRKVQGAIQERQGTKEEEQFQSELTRLASMTKYDLRAFKEAMDNAEKGSWFSWVNKVPGVRSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEINLLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQQKQQRRASRRGSRLPF 217
            VRHST+WR VQ AIQER+ +KEEEQFQ+EL RLASMT+YDLR FKEA+D     SWFSWVNKVPGVRSMPEV +GERY+KILGA TEEEL++PE IKSREKQRVATQSGES+QEINLLL+LYENSQ+LHKWVRRRVADKKE+PKT+SECQVLMMGDPAG+SV AMQQKQQ+RA ++G+RLPF
Sbjct:   68 VRHSTVWRVVQNAIQERRASKEEEQFQAELARLASMTRYDLRNFKEAVDKPGN-SWFSWVNKVPGVRSMPEVQVGERYRKILGAFTEEELAHPEKIKSREKQRVATQSGESIQEINLLLSLYENSQALHKWVRRRVADKKEMPKTQSECQVLMMGDPAGVSVGAMQQKQQKRALKKGNRLPF 248
The following BLAST results are available for this feature:
BLAST of NO15G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22370.13.100e-7680.77signal recognition particle protein [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02350NO15G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02350.1NO15G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02350.1.cds1NO15G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02350.1 ID=NO15G02350.1|Name=NO15G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=651bp
ATGCTGCCAGTCGTGCGACGCACCGCCCGGGCCTTGCCCTTGCTAATGCC
CCCCCGCCTTTCCCCCACGACCACGCCCACGTCGACCAGCACCATTATAG
CCGTTCGACACTCCACCATCTGGCGAAAGGTGCAAGGTGCGATTCAAGAG
CGGCAAGGCACCAAGGAAGAGGAGCAGTTCCAGTCGGAGCTCACCCGCTT
GGCAAGTATGACCAAGTACGACTTACGGGCTTTCAAAGAAGCCATGGACA
ACGCGGAGAAGGGCTCATGGTTTTCGTGGGTGAACAAGGTGCCTGGCGTG
AGGAGCATGCCGGAGGTAATGATGGGGGAAAGGTACAAGAAGATTTTGGG
GGCGCTGACGGAGGAAGAACTGTCCAACCCAGAGCTGATTAAGTCGCGGG
AGAAGCAACGCGTGGCCACGCAGAGTGGAGAGTCGGTGCAGGAGATCAAT
TTGTTACTGAATTTATACGAGAACTCACAGTCGCTGCACAAATGGGTGCG
GCGGCGCGTGGCGGACAAGAAGGAACTGCCCAAGACGAGAAGTGAATGTC
AGGTATTGATGATGGGGGACCCGGCAGGTATTTCCGTGAGTGCGATGCAG
CAGAAACAGCAACGACGAGCCTCGCGACGAGGGAGCCGGTTGCCGTTTTA
G
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protein sequence of NO15G02350.1

>NO15G02350.1-protein ID=NO15G02350.1-protein|Name=NO15G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MLPVVRRTARALPLLMPPRLSPTTTPTSTSTIIAVRHSTIWRKVQGAIQE
RQGTKEEEQFQSELTRLASMTKYDLRAFKEAMDNAEKGSWFSWVNKVPGV
RSMPEVMMGERYKKILGALTEEELSNPELIKSREKQRVATQSGESVQEIN
LLLNLYENSQSLHKWVRRRVADKKELPKTRSECQVLMMGDPAGISVSAMQ
QKQQRRASRRGSRLPF*
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mRNA from alignment at chr15:650378..651028+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02350.1 ID=NO15G02350.1|Name=NO15G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=651bp|location=Sequence derived from alignment at chr15:650378..651028+ (Nannochloropsis oceanica)
ATGCTGCCAGTCGTGCGACGCACCGCCCGGGCCTTGCCCTTGCTAATGCC
CCCCCGCCTTTCCCCCACGACCACGCCCACGTCGACCAGCACCATTATAG
CCGTTCGACACTCCACCATCTGGCGAAAGGTGCAAGGTGCGATTCAAGAG
CGGCAAGGCACCAAGGAAGAGGAGCAGTTCCAGTCGGAGCTCACCCGCTT
GGCAAGTATGACCAAGTACGACTTACGGGCTTTCAAAGAAGCCATGGACA
ACGCGGAGAAGGGCTCATGGTTTTCGTGGGTGAACAAGGTGCCTGGCGTG
AGGAGCATGCCGGAGGTAATGATGGGGGAAAGGTACAAGAAGATTTTGGG
GGCGCTGACGGAGGAAGAACTGTCCAACCCAGAGCTGATTAAGTCGCGGG
AGAAGCAACGCGTGGCCACGCAGAGTGGAGAGTCGGTGCAGGAGATCAAT
TTGTTACTGAATTTATACGAGAACTCACAGTCGCTGCACAAATGGGTGCG
GCGGCGCGTGGCGGACAAGAAGGAACTGCCCAAGACGAGAAGTGAATGTC
AGGTATTGATGATGGGGGACCCGGCAGGTATTTCCGTGAGTGCGATGCAG
CAGAAACAGCAACGACGAGCCTCGCGACGAGGGAGCCGGTTGCCGTTTTA
G
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Coding sequence (CDS) from alignment at chr15:650378..651028+

>NO15G02350.1 ID=NO15G02350.1|Name=NO15G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at chr15:650378..651028+ (Nannochloropsis oceanica)
ATGCTGCCAGTCGTGCGACGCACCGCCCGGGCCTTGCCCTTGCTAATGCC
CCCCCGCCTTTCCCCCACGACCACGCCCACGTCGACCAGCACCATTATAG
CCGTTCGACACTCCACCATCTGGCGAAAGGTGCAAGGTGCGATTCAAGAG
CGGCAAGGCACCAAGGAAGAGGAGCAGTTCCAGTCGGAGCTCACCCGCTT
GGCAAGTATGACCAAGTACGACTTACGGGCTTTCAAAGAAGCCATGGACA
ACGCGGAGAAGGGCTCATGGTTTTCGTGGGTGAACAAGGTGCCTGGCGTG
AGGAGCATGCCGGAGGTAATGATGGGGGAAAGGTACAAGAAGATTTTGGG
GGCGCTGACGGAGGAAGAACTGTCCAACCCAGAGCTGATTAAGTCGCGGG
AGAAGCAACGCGTGGCCACGCAGAGTGGAGAGTCGGTGCAGGAGATCAAT
TTGTTACTGAATTTATACGAGAACTCACAGTCGCTGCACAAATGGGTGCG
GCGGCGCGTGGCGGACAAGAAGGAACTGCCCAAGACGAGAAGTGAATGTC
AGGTATTGATGATGGGGGACCCGGCAGGTATTTCCGTGAGTGCGATGCAG
CAGAAACAGCAACGACGAGCCTCGCGACGAGGGAGCCGGTTGCCGTTTTA
G
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Synonyms
Publications