NO15G02310, NO15G02310 (gene) Nannochloropsis oceanica

Overview
NameNO15G02310
Unique NameNO15G02310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1030
Alignment locationchr15:643513..644542 -

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Properties
Property NameValue
DescriptionU5 small nuclear ribonucleoprotein helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:643513..644542 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO15G02310 vs. NCBI_GenBank
Match: XP_005852640.1 (activating signal cointegrator 1 complex subunit 3-like 1, partial [Nannochloropsis gaditana CCMP526] >EKU23192.1 activating signal cointegrator 1 complex subunit 3-like 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 302.0 bits (772), Expect = 1.900e-78
Identity = 166/209 (79.43%), Postives = 179/209 (85.65%), Query Frame = 0 
Query:    1 MSLEFEQQKKYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRV-GGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKE---GVFSAGRGATVLTETEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDFNVGG 206
            MSLEFEQQKKYDY ANSNLVLEADR G+GGRRR DE TGEVEVWDE KL+GKRMGDRV GGRTRAPEVEERL++SKEK+             +GG+ KE   GVFSAGRGATVLTETEALEAINYRPRH ESKRAYEE+L LI+GNIGDQPQDILRGAADEVLAILKDE +TDPRRL EI+K+IRK+ PEKFNKLVTLGK IHDFN GG
Sbjct:    1 MSLEFEQQKKYDYTANSNLVLEADR-GEGGRRRHDEATGEVEVWDEKKLSGKRMGDRVGGGRTRAPEVEERLQRSKEKRXXXXXXXXXXXXIAGGRTKESKKGVFSAGRGATVLTETEALEAINYRPRHPESKRAYEEMLGLIKGNIGDQPQDILRGAADEVLAILKDESLTDPRRLTEIQKLIRKLSPEKFNKLVTLGKGIHDFNTGG 208
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BLAST of NO15G02310 vs. NCBI_GenBank
Match: EWM22383.1 (u5 small nuclear ribonucleoprotein helicase [Nannochloropsis gaditana])

HSP 1 Score: 302.0 bits (772), Expect = 1.900e-78
Identity = 166/209 (79.43%), Postives = 179/209 (85.65%), Query Frame = 0 
Query:    1 MSLEFEQQKKYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRV-GGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKE---GVFSAGRGATVLTETEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDFNVGG 206
            MSLEFEQQKKYDY ANSNLVLEADR G+GGRRR DE TGEVEVWDE KL+GKRMGDRV GGRTRAPEVEERL++SKEK+             +GG+ KE   GVFSAGRGATVLTETEALEAINYRPRH ESKRAYEE+L LI+GNIGDQPQDILRGAADEVLAILKDE +TDPRRL EI+K+IRK+ PEKFNKLVTLGK IHDFN GG
Sbjct:    1 MSLEFEQQKKYDYTANSNLVLEADR-GEGGRRRHDEATGEVEVWDEKKLSGKRMGDRVGGGRTRAPEVEERLQRSKEKRXXXXXXXXXXXXIAGGRTKESKKGVFSAGRGATVLTETEALEAINYRPRHPESKRAYEEMLGLIKGNIGDQPQDILRGAADEVLAILKDESLTDPRRLTEIQKLIRKLSPEKFNKLVTLGKGIHDFNTGG 208
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BLAST of NO15G02310 vs. NCBI_GenBank
Match: CBN74395.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 157.5 bits (397), Expect = 5.900e-35
Identity = 98/202 (48.51%), Postives = 135/202 (66.83%), Query Frame = 0 
Query:    1 MSLEFEQQKKYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGVFSAGRGATVLTETEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDFN 203
            M+ +  + K ++YKANSNLVL ADR     RRR +EGTGEVE     ++ G++MGDR+  +   PE+EER K                        K  VF AG+G+TVLTETE L++INYRP+  +S+ AYEE+LS +  ++GDQPQD+LRGAADEVLA LKDE +TD +R   +E+++ K+ PE+F+KLV+LGK+I DF+
Sbjct:    1 MAEDAVRNKIFEYKANSNLVLTADRD---SRRRGEEGTGEVESL-HGRMKGQKMGDRL-DKGNKPELEERKKXXXXXXXXXXXXXXXXXXXRSRMQK--VFVAGKGSTVLTETEELDSINYRPKTKQSRIAYEEVLSTMVASLGDQPQDVLRGAADEVLAWLKDESLTDHKRQEGVEEILGKMRPERFHKLVSLGKSITDFS 195
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BLAST of NO15G02310 vs. NCBI_GenBank
Match: XP_001641209.1 (predicted protein [Nematostella vectensis] >EDO49146.1 predicted protein [Nematostella vectensis])

HSP 1 Score: 126.3 bits (316), Expect = 1.500e-25
Identity = 89/193 (46.11%), Postives = 116/193 (60.10%), Query Frame = 0 
Query:   10 KYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGVFSAGRGATVLT-ETEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDF 202
            +Y+YKANSNLVL+ADRS    RR +DE TGEV V     L G RMGD+   RT+ P  EER  K ++  ++E                   F+  RG+++L+ E E L  + YRP+  E+K  YE +LS IQ  IGDQP+DIL GAADEVLA LKD+KM D  +L EI  ++  +  E+F  LV LGK I D+
Sbjct:   10 QYEYKANSNLVLQADRSLI-DRRSRDEATGEV-VSLVGHLGGMRMGDKY-ERTKPPVSEERKAKRQKIADKE------------------EFAKLRGSSLLSEEVEDLTGVRYRPKTRETKSTYEVLLSFIQAAIGDQPRDILCGAADEVLASLKDDKMKDKEKLKEIVSLLGDMPDERFALLVNLGKKITDY 181
[Close]
BLAST of NO15G02310 vs. NCBI_GenBank
Match: KOF83556.1 (hypothetical protein OCBIM_22023571mg [Octopus bimaculoides])

HSP 1 Score: 125.6 bits (314), Expect = 2.500e-25
Identity = 85/193 (44.04%), Postives = 118/193 (61.14%), Query Frame = 0 
Query:   10 KYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGVFSAGRGATVLTE-TEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDF 202
            +Y+YKANSNLVL+ADRS    RR +DE TGEV +    KL G RMGD+   RT+ P++EER  K K++ E                 K  V    +G T+L+E    +  I YRP+  E+++ YE +LS IQ  +GDQP+D+L GAADEVL++LK+++M D  R  E+E +I  +  E+F  LV LGK I D+
Sbjct:   10 QYEYKANSNLVLQADRSLI-DRRARDEATGEV-ISLVGKLEGSRMGDK-SKRTKPPQMEERKVKRKKRDE----------------AKREVMKM-KGTTLLSEGINDMVGIVYRPKTQETRQTYEVLLSFIQAALGDQPRDVLCGAADEVLSVLKNDRMKDKERKREVESLIGSLADERFALLVNLGKKISDW 182
[Close]
BLAST of NO15G02310 vs. NCBI_GenBank
Match: KOF83557.1 (hypothetical protein OCBIM_22023571mg [Octopus bimaculoides])

HSP 1 Score: 125.6 bits (314), Expect = 2.500e-25
Identity = 85/193 (44.04%), Postives = 118/193 (61.14%), Query Frame = 0 
Query:   10 KYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGVFSAGRGATVLTE-TEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDF 202
            +Y+YKANSNLVL+ADRS    RR +DE TGEV +    KL G RMGD+   RT+ P++EER  K K++ E                 K  V    +G T+L+E    +  I YRP+  E+++ YE +LS IQ  +GDQP+D+L GAADEVL++LK+++M D  R  E+E +I  +  E+F  LV LGK I D+
Sbjct:   10 QYEYKANSNLVLQADRSLI-DRRARDEATGEV-ISLVGKLEGSRMGDK-SKRTKPPQMEERKVKRKKRDE----------------AKREVMKM-KGTTLLSEGINDMVGIVYRPKTQETRQTYEVLLSFIQAALGDQPRDVLCGAADEVLSVLKNDRMKDKERKREVESLIGSLADERFALLVNLGKKISDW 182
[Close]
BLAST of NO15G02310 vs. NCBI_GenBank
Match: XP_014775846.1 (PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Octopus bimaculoides] >KOF83558.1 hypothetical protein OCBIM_22023571mg [Octopus bimaculoides])

HSP 1 Score: 125.6 bits (314), Expect = 2.500e-25
Identity = 85/193 (44.04%), Postives = 118/193 (61.14%), Query Frame = 0 
Query:   10 KYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGVFSAGRGATVLTE-TEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDF 202
            +Y+YKANSNLVL+ADRS    RR +DE TGEV +    KL G RMGD+   RT+ P++EER  K K++ E                 K  V    +G T+L+E    +  I YRP+  E+++ YE +LS IQ  +GDQP+D+L GAADEVL++LK+++M D  R  E+E +I  +  E+F  LV LGK I D+
Sbjct:   10 QYEYKANSNLVLQADRSLI-DRRARDEATGEV-ISLVGKLEGSRMGDK-SKRTKPPQMEERKVKRKKRDE----------------AKREVMKM-KGTTLLSEGINDMVGIVYRPKTQETRQTYEVLLSFIQAALGDQPRDVLCGAADEVLSVLKNDRMKDKERKREVESLIGSLADERFALLVNLGKKISDW 182
[Close]
BLAST of NO15G02310 vs. NCBI_GenBank
Match: KXJ70227.1 (hypothetical protein RP20_CCG024460 [Aedes albopictus])

HSP 1 Score: 124.8 bits (312), Expect = 4.200e-25
Identity = 88/197 (44.67%), Postives = 123/197 (62.44%), Query Frame = 0 
Query:    7 QQKKYDYKANSNLVLEAD-RSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGVFSAGRGATVLTE-TEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDF 202
            +Q +Y+YKANSNLVL+AD R  +  R R+DE TGEV +    KL G RMGDR   RT+  + EER  K +++ E ++                  F++ +GAT+LTE  + +  I YRP+  E+++ YE +LS IQ  IGDQP+DIL GAADE+LA+LK++K+ D  R  EI+ ++  V  E+F  LV LGK I DF
Sbjct:    7 RQLQYEYKANSNLVLQADVRLIE--RPRRDEATGEV-LSLVGKLEGTRMGDR-AQRTKPEKTEERKAKRQKRDEAQYD-----------------FNSMKGATLLTEGIDEMVGIVYRPKTQETRQTYEVLLSFIQEAIGDQPRDILCGAADEILAVLKNDKLKDRERKREIDGLLGTVTDERFALLVNLGKKITDF 182
[Close]
BLAST of NO15G02310 vs. NCBI_GenBank
Match: XP_019539539.1 (PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Aedes albopictus])

HSP 1 Score: 124.8 bits (312), Expect = 4.200e-25
Identity = 88/197 (44.67%), Postives = 123/197 (62.44%), Query Frame = 0 
Query:    7 QQKKYDYKANSNLVLEAD-RSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGVFSAGRGATVLTE-TEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDF 202
            +Q +Y+YKANSNLVL+AD R  +  R R+DE TGEV +    KL G RMGDR   RT+  + EER  K +++ E ++                  F++ +GAT+LTE  + +  I YRP+  E+++ YE +LS IQ  IGDQP+DIL GAADE+LA+LK++K+ D  R  EI+ ++  V  E+F  LV LGK I DF
Sbjct:    7 RQLQYEYKANSNLVLQADVRLIE--RPRRDEATGEV-LSLVGKLEGTRMGDR-AQRTKPEKTEERKAKRQKRDEAQYD-----------------FNSMKGATLLTEGIDEMVGIVYRPKTQETRQTYEVLLSFIQEAIGDQPRDILCGAADEILAVLKNDKLKDRERKREIDGLLGTVTDERFALLVNLGKKITDF 182
[Close]
BLAST of NO15G02310 vs. NCBI_GenBank
Match: XP_019529598.1 (PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Aedes albopictus])

HSP 1 Score: 124.8 bits (312), Expect = 4.200e-25
Identity = 88/197 (44.67%), Postives = 123/197 (62.44%), Query Frame = 0 
Query:    7 QQKKYDYKANSNLVLEAD-RSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGVFSAGRGATVLTE-TEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDF 202
            +Q +Y+YKANSNLVL+AD R  +  R R+DE TGEV +    KL G RMGDR   RT+  + EER  K +++ E ++                  F++ +GAT+LTE  + +  I YRP+  E+++ YE +LS IQ  IGDQP+DIL GAADE+LA+LK++K+ D  R  EI+ ++  V  E+F  LV LGK I DF
Sbjct:    7 RQLQYEYKANSNLVLQADVRLIE--RPRRDEATGEV-LSLVGKLEGTRMGDR-AQRTKPEKTEERKAKRQKRDEAQYD-----------------FNSMKGATLLTEGIDEMVGIVYRPKTQETRQTYEVLLSFIQEAIGDQPRDILCGAADEILAVLKNDKLKDRERKREIDGLLGTVTDERFALLVNLGKKITDF 182
The following BLAST results are available for this feature:
BLAST of NO15G02310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005852640.11.900e-7879.43activating signal cointegrator 1 complex subunit 3... [more]
EWM22383.11.900e-7879.43u5 small nuclear ribonucleoprotein helicase [Nanno... [more]
CBN74395.15.900e-3548.51conserved unknown protein [Ectocarpus siliculosus][more]
XP_001641209.11.500e-2546.11predicted protein [Nematostella vectensis] >EDO491... [more]
KOF83556.12.500e-2544.04hypothetical protein OCBIM_22023571mg [Octopus bim... [more]
KOF83557.12.500e-2544.04hypothetical protein OCBIM_22023571mg [Octopus bim... [more]
XP_014775846.12.500e-2544.04PREDICTED: U5 small nuclear ribonucleoprotein 200 ... [more]
KXJ70227.14.200e-2544.67hypothetical protein RP20_CCG024460 [Aedes albopic... [more]
XP_019539539.14.200e-2544.67PREDICTED: putative U5 small nuclear ribonucleopro... [more]
XP_019529598.14.200e-2544.67PREDICTED: putative U5 small nuclear ribonucleopro... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02310.1NO15G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02310.1NO15G02310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02310 ID=NO15G02310|Name=NO15G02310|organism=Nannochloropsis oceanica|type=gene|length=1030bp
ACAGGCAGCCATCCACACTCGTACGCATCCCTGTCCGTCGTGGAAGGACC
GTAGCACCGTAATCGAATTTCTTGAGGTCGTCTAGCCGGGCGGATCATCC
GCGTTAGGCAGCACAGCAGCACCAGCACCAGCAGCAATAGCAGCTGCGGC
CACAACCAAACACACACGTCCTCCTCCGCCTTCCTGATCAAGCATGTCCC
TCGAGTTTGAGCAGCAGAAGAAGTATGACTACAAGGCCAATAGTAACTTG
GTCTTGGAAGCGGATCGGAGTGGTGATGGTGGTCGTCGGCGGAAGGATGA
AGGGACGGGTGAAGTAGAGGTGTGGGACGAGGCCAAACTTGCCGGAAAAC
GCATGGGGGACCGGGTGGGAGGACGCACACGTGCCCCGGAGGTGGAGGAG
AGGCTGAAGAAGAGCAAAGAGAAGAAAGAGAGGGAGTTTAGAGGGGTGGA
GGGGAGGAAGAAAAAGAGTGGGGGGAAAGGAAAAGAAGGTGTTTTTTCGG
CAGGGAGGGGAGCGACGGTGCTGACGGAGACGGAGGCGCTGGAAGCGATA
AACTATCGGCCGAGGCATTCGGAGAGTAAGAGAGCTTATGAAGAGATTTT
GTCGTTGATTCAGGGAAATATTGGGGACCAGCCGCAAGATATTCTTAGGG
GGGCGGCGGATGAGGTCCTCGCTATATTAAAGGACGAGAAAATGACGGAC
CCGAGGAGGTTGGTTGAGATTGAGAAGATGATTAGAAAGGTAGGTCCGGA
GAAATTCAACAAGCTGGTGACTCTGGGTAAAGCGATTCATGATTTTAATG
TGGGGGGAAAGGGAGGGAGGGAAGGCGGGGGGGAGGATGGGGGGGAGGAG
GAAGAGGACAAAATGTTGGATGAGGAGATGGGCGTGAGGGTGGAGTTTGA
CCGGGACGAGGAGGAGGAGGAAGAGAGTGACTTGGACGAGGTGGTGGAGG
AGGAGGACGACGAGGAGGAGGAATTGGGAGAAGGGGAAGAGGAGGGGGAG
GAGCGGGAGAGAGGGAGGCCTGGGGGGTGA
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protein sequence of NO15G02310.1

>NO15G02310.1-protein ID=NO15G02310.1-protein|Name=NO15G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MSLEFEQQKKYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLA
GKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGV
FSAGRGATVLTETEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDI
LRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHD
FNVGGKGGREGGGEDGGEEEEDKMLDEEMGVRVEFDRDEEEEEESDLDEV
VEEEDDEEEELGEGEEEGEERERGRPGG*
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Synonyms
Publications