NO15G02310.1, NO15G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02310.1
Unique NameNO15G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1030
Alignment locationchr15:643513..644542 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:643513..644542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02310.1 vs.
Match: EWM22383.1 (u5 small nuclear ribonucleoprotein helicase [Nannochloropsis gaditana])

HSP 1 Score: 372.9 bits (956), Expect = 8.900e-100
Identity = 226/282 (80.14%), Postives = 246/282 (87.23%), Query Frame = 0 
Query:    1 MSLEFEQQKKYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLAGKRMGDRV-GGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKE---GVFSAGRGATVLTETEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDILRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHDFNVGGKGGREGGGEDGGEEEEDKMLDEEMGVRVEFDRDEEEEEESDLDEVVEEEDDEEEELGEGEEEGEERERGRPGG 279
            MSLEFEQQKKYDY ANSNLVLEADR G+GGRRR DE TGEVEVWDE KL+GKRMGDRV GGRTRAPEVEERL++SKEK+ERE RG+EG KK +GG+ KE   GVFSAGRGATVLTETEALEAINYRPRH ESKRAYEE+L LI+GNIGDQPQDILRGAADEVLAILKDE +TDPRRL EI+K+IRK+ PEKFNKLVTLGK IHDFN GG GG EG GE   EE+E ++LDEEMGVRVEFDRDEEEEEESDLDEVVEE++DEEEE  EGEE G+   R R  G
Sbjct:    1 MSLEFEQQKKYDYTANSNLVLEADR-GEGGRRRHDEATGEVEVWDEKKLSGKRMGDRVGGGRTRAPEVEERLQRSKEKRERELRGLEGGKKIAGGRTKESKKGVFSAGRGATVLTETEALEAINYRPRHPESKRAYEEMLGLIKGNIGDQPQDILRGAADEVLAILKDESLTDPRRLTEIQKLIRKLSPEKFNKLVTLGKGIHDFNTGGAGG-EGQGE---EEDEKQVLDEEMGVRVEFDRDEEEEEESDLDEVVEEDEDEEEE-EEGEEGGQGGGRERQLG 276
The following BLAST results are available for this feature:
BLAST of NO15G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22383.18.900e-10080.14u5 small nuclear ribonucleoprotein helicase [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02310NO15G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02310.1NO15G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02310.1.cds1NO15G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02310.1 ID=NO15G02310.1|Name=NO15G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1030bp
ACAGGCAGCCATCCACACTCGTACGCATCCCTGTCCGTCGTGGAAGGACC
GTAGCACCGTAATCGAATTTCTTGAGGTCGTCTAGCCGGGCGGATCATCC
GCGTTAGGCAGCACAGCAGCACCAGCACCAGCAGCAATAGCAGCTGCGGC
CACAACCAAACACACACGTCCTCCTCCGCCTTCCTGATCAAGCATGTCCC
TCGAGTTTGAGCAGCAGAAGAAGTATGACTACAAGGCCAATAGTAACTTG
GTCTTGGAAGCGGATCGGAGTGGTGATGGTGGTCGTCGGCGGAAGGATGA
AGGGACGGGTGAAGTAGAGGTGTGGGACGAGGCCAAACTTGCCGGAAAAC
GCATGGGGGACCGGGTGGGAGGACGCACACGTGCCCCGGAGGTGGAGGAG
AGGCTGAAGAAGAGCAAAGAGAAGAAAGAGAGGGAGTTTAGAGGGGTGGA
GGGGAGGAAGAAAAAGAGTGGGGGGAAAGGAAAAGAAGGTGTTTTTTCGG
CAGGGAGGGGAGCGACGGTGCTGACGGAGACGGAGGCGCTGGAAGCGATA
AACTATCGGCCGAGGCATTCGGAGAGTAAGAGAGCTTATGAAGAGATTTT
GTCGTTGATTCAGGGAAATATTGGGGACCAGCCGCAAGATATTCTTAGGG
GGGCGGCGGATGAGGTCCTCGCTATATTAAAGGACGAGAAAATGACGGAC
CCGAGGAGGTTGGTTGAGATTGAGAAGATGATTAGAAAGGTAGGTCCGGA
GAAATTCAACAAGCTGGTGACTCTGGGTAAAGCGATTCATGATTTTAATG
TGGGGGGAAAGGGAGGGAGGGAAGGCGGGGGGGAGGATGGGGGGGAGGAG
GAAGAGGACAAAATGTTGGATGAGGAGATGGGCGTGAGGGTGGAGTTTGA
CCGGGACGAGGAGGAGGAGGAAGAGAGTGACTTGGACGAGGTGGTGGAGG
AGGAGGACGACGAGGAGGAGGAATTGGGAGAAGGGGAAGAGGAGGGGGAG
GAGCGGGAGAGAGGGAGGCCTGGGGGGTGA
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protein sequence of NO15G02310.1

>NO15G02310.1-protein ID=NO15G02310.1-protein|Name=NO15G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MSLEFEQQKKYDYKANSNLVLEADRSGDGGRRRKDEGTGEVEVWDEAKLA
GKRMGDRVGGRTRAPEVEERLKKSKEKKEREFRGVEGRKKKSGGKGKEGV
FSAGRGATVLTETEALEAINYRPRHSESKRAYEEILSLIQGNIGDQPQDI
LRGAADEVLAILKDEKMTDPRRLVEIEKMIRKVGPEKFNKLVTLGKAIHD
FNVGGKGGREGGGEDGGEEEEDKMLDEEMGVRVEFDRDEEEEEESDLDEV
VEEEDDEEEELGEGEEEGEERERGRPGG*
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mRNA from alignment at chr15:643513..644542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02310.1 ID=NO15G02310.1|Name=NO15G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1030bp|location=Sequence derived from alignment at chr15:643513..644542- (Nannochloropsis oceanica)
ACAGGCAGCCATCCACACTCGTACGCATCCCTGTCCGTCGTGGAAGGACC
GTAGCACCGTAATCGAATTTCTTGAGGTCGTCTAGCCGGGCGGATCATCC
GCGTTAGGCAGCACAGCAGCACCAGCACCAGCAGCAATAGCAGCTGCGGC
CACAACCAAACACACACGTCCTCCTCCGCCTTCCTGATCAAGCATGTCCC
TCGAGTTTGAGCAGCAGAAGAAGTATGACTACAAGGCCAATAGTAACTTG
GTCTTGGAAGCGGATCGGAGTGGTGATGGTGGTCGTCGGCGGAAGGATGA
AGGGACGGGTGAAGTAGAGGTGTGGGACGAGGCCAAACTTGCCGGAAAAC
GCATGGGGGACCGGGTGGGAGGACGCACACGTGCCCCGGAGGTGGAGGAG
AGGCTGAAGAAGAGCAAAGAGAAGAAAGAGAGGGAGTTTAGAGGGGTGGA
GGGGAGGAAGAAAAAGAGTGGGGGGAAAGGAAAAGAAGGTGTTTTTTCGG
CAGGGAGGGGAGCGACGGTGCTGACGGAGACGGAGGCGCTGGAAGCGATA
AACTATCGGCCGAGGCATTCGGAGAGTAAGAGAGCTTATGAAGAGATTTT
GTCGTTGATTCAGGGAAATATTGGGGACCAGCCGCAAGATATTCTTAGGG
GGGCGGCGGATGAGGTCCTCGCTATATTAAAGGACGAGAAAATGACGGAC
CCGAGGAGGTTGGTTGAGATTGAGAAGATGATTAGAAAGGTAGGTCCGGA
GAAATTCAACAAGCTGGTGACTCTGGGTAAAGCGATTCATGATTTTAATG
TGGGGGGAAAGGGAGGGAGGGAAGGCGGGGGGGAGGATGGGGGGGAGGAG
GAAGAGGACAAAATGTTGGATGAGGAGATGGGCGTGAGGGTGGAGTTTGA
CCGGGACGAGGAGGAGGAGGAAGAGAGTGACTTGGACGAGGTGGTGGAGG
AGGAGGACGACGAGGAGGAGGAATTGGGAGAAGGGGAAGAGGAGGGGGAG
GAGCGGGAGAGAGGGAGGCCTGGGGGGTGA
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Coding sequence (CDS) from alignment at chr15:643513..644542-

>NO15G02310.1 ID=NO15G02310.1|Name=NO15G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr15:643513..644542- (Nannochloropsis oceanica)
ATGTCCCTCGAGTTTGAGCAGCAGAAGAAGTATGACTACAAGGCCAATAG
TAACTTGGTCTTGGAAGCGGATCGGAGTGGTGATGGTGGTCGTCGGCGGA
AGGATGAAGGGACGGGTGAAGTAGAGGTGTGGGACGAGGCCAAACTTGCC
GGAAAACGCATGGGGGACCGGGTGGGAGGACGCACACGTGCCCCGGAGGT
GGAGGAGAGGCTGAAGAAGAGCAAAGAGAAGAAAGAGAGGGAGTTTAGAG
GGGTGGAGGGGAGGAAGAAAAAGAGTGGGGGGAAAGGAAAAGAAGGTGTT
TTTTCGGCAGGGAGGGGAGCGACGGTGCTGACGGAGACGGAGGCGCTGGA
AGCGATAAACTATCGGCCGAGGCATTCGGAGAGTAAGAGAGCTTATGAAG
AGATTTTGTCGTTGATTCAGGGAAATATTGGGGACCAGCCGCAAGATATT
CTTAGGGGGGCGGCGGATGAGGTCCTCGCTATATTAAAGGACGAGAAAAT
GACGGACCCGAGGAGGTTGGTTGAGATTGAGAAGATGATTAGAAAGGTAG
GTCCGGAGAAATTCAACAAGCTGGTGACTCTGGGTAAAGCGATTCATGAT
TTTAATGTGGGGGGAAAGGGAGGGAGGGAAGGCGGGGGGGAGGATGGGGG
GGAGGAGGAAGAGGACAAAATGTTGGATGAGGAGATGGGCGTGAGGGTGG
AGTTTGACCGGGACGAGGAGGAGGAGGAAGAGAGTGACTTGGACGAGGTG
GTGGAGGAGGAGGACGACGAGGAGGAGGAATTGGGAGAAGGGGAAGAGGA
GGGGGAGGAGCGGGAGAGAGGGAGGCCTGGGGGGTGA
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Synonyms
Publications