NO15G02300, NO15G02300 (gene) Nannochloropsis oceanica

Overview
NameNO15G02300
Unique NameNO15G02300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length501
Alignment locationchr15:642989..643489 -

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Properties
Property NameValue
DescriptionU5 small nuclear ribonucleoprotein helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:642989..643489 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Homology
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: EWM22383.1 (u5 small nuclear ribonucleoprotein helicase [Nannochloropsis gaditana])

HSP 1 Score: 221.1 bits (562), Expect = 2.600e-54
Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 0 
Query:   25 RQLSKFYEDANISAKLAEDVLAILGGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELGGPGILKELYQKASAESWAADRQGEFVRKTKGEARDLAG 150
            RQL K+YEDANISAKLAEDVLAILGG DELDCESKLVVLLDVDKFDFIKKLMKNRGK+L+CTRLKQAQS AEKKEVE EML D+ELGGP ILKELYQKA+AESWAADRQGEFVRKTKGEAR L G
Sbjct:  273 RQLGKYYEDANISAKLAEDVLAILGGADELDCESKLVVLLDVDKFDFIKKLMKNRGKILFCTRLKQAQSQAEKKEVEAEMLQDVELGGPAILKELYQKATAESWAADRQGEFVRKTKGEARGLGG 397
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: XP_009036945.1 (hypothetical protein AURANDRAFT_37524 [Aureococcus anophagefferens] >EGB08212.1 hypothetical protein AURANDRAFT_37524 [Aureococcus anophagefferens])

HSP 1 Score: 163.7 bits (413), Expect = 4.900e-37
Identity = 84/151 (55.63%), Postives = 112/151 (74.17%), Query Frame = 0 
Query:    4 EDEGEAAMR-LSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAILG--GRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELGGPGILKELYQKASAESWAADRQGEFVRKTKGEARDLAGRE 152
            +D+G+     L VH IDA WLQR + ++Y+DAN+SAKLA+DVLAILG  G D+ +CE++LV+LLD DKFDFIK L+ NR +VLYCTRLKQAQSD ++K VE  M+ D+E GG  IL+ L++K SAE+WA DR  +F  +T+ EA +    E
Sbjct:  260 DDDGDGDDHLLDVHAIDAHWLQRGIGEYYDDANVSAKLADDVLAILGPEGGDDRECENRLVMLLDYDKFDFIKLLLSNRRRVLYCTRLKQAQSDEDRKAVEAAMVNDVEGGGAAILEALHEKGSAETWAQDRAADFASRTRKEAAEATKME 410
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: ETK73250.1 (hypothetical protein L915_19792 [Phytophthora parasitica] >ETL26687.1 hypothetical protein L916_19676 [Phytophthora parasitica] >ETP02746.1 hypothetical protein F441_20229 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 161.4 bits (407), Expect = 2.400e-36
Identity = 92/159 (57.86%), Postives = 113/159 (71.07%), Query Frame = 0 
Query:    4 EDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAIL--GGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELG---GPGILKELYQKASAESWAADRQGEFVRKTKGEA---RDLAGREGGR 155
            ED+G+A  RL VH IDAFWLQR+LSKFY+DA ISAKLAEDVL IL   G D   CE++LV+LLD DKFDFIK L++NR KVLYCTRLKQAQ+D E++ +E EM+AD  L    G  IL++L   ASA+SW  DR G     ++ EA   R L  + GG+
Sbjct:  277 EDDGDAKYRLDVHAIDAFWLQRELSKFYKDAEISAKLAEDVLNILKEAGSDLSACENRLVLLLDYDKFDFIKLLLENRAKVLYCTRLKQAQNDEERRSIEEEMVADETLNDGEGRTILEQLRTTASADSWMQDRIGAMETTSRAEANKLRKLQQKSGGQ 435
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: ETM33163.1 (hypothetical protein L914_19566 [Phytophthora parasitica])

HSP 1 Score: 161.4 bits (407), Expect = 2.400e-36
Identity = 92/159 (57.86%), Postives = 113/159 (71.07%), Query Frame = 0 
Query:    4 EDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAIL--GGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELG---GPGILKELYQKASAESWAADRQGEFVRKTKGEA---RDLAGREGGR 155
            ED+G+A  RL VH IDAFWLQR+LSKFY+DA ISAKLAEDVL IL   G D   CE++LV+LLD DKFDFIK L++NR KVLYCTRLKQAQ+D E++ +E EM+AD  L    G  IL++L   ASA+SW  DR G     ++ EA   R L  + GG+
Sbjct:  277 EDDGDAKYRLDVHAIDAFWLQRELSKFYKDAEISAKLAEDVLNILKEAGSDLSACENRLVLLLDYDKFDFIKLLLENRAKVLYCTRLKQAQNDEERRSIEEEMVADETLNDGEGRTILEQLRTTASADSWMQDRIGAMETTSRAEANKLRKLQQKSGGQ 435
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: ETI32909.1 (hypothetical protein F443_20356 [Phytophthora parasitica P1569])

HSP 1 Score: 160.2 bits (404), Expect = 5.400e-36
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 0 
Query:    4 EDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAIL--GGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELG---GPGILKELYQKASAESWAADRQGEFVRKTKGEA---RDLAGREGGR 155
            ED+G++  RL VH IDAFWLQR+LSKFY+DA ISAKLAEDVL IL   G D   CE++LV+LLD DKFDFIK L++NR KVLYCTRLKQAQ+D E++ +E EM+AD  L    G  IL++L   ASA+SW  DR G     ++ EA   R L  + GG+
Sbjct:  277 EDDGDSKYRLDVHAIDAFWLQRELSKFYKDAEISAKLAEDVLNILKEAGSDLSACENRLVLLLDYDKFDFIKLLLENRAKVLYCTRLKQAQNDEERRSIEEEMVADETLNDGEGRTILEQLRTTASADSWMQDRIGAMETTSRAEANKLRKLQQKSGGQ 435
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: ETL79926.1 (hypothetical protein L917_19529 [Phytophthora parasitica])

HSP 1 Score: 160.2 bits (404), Expect = 5.400e-36
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 0 
Query:    4 EDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAIL--GGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELG---GPGILKELYQKASAESWAADRQGEFVRKTKGEA---RDLAGREGGR 155
            ED+G++  RL VH IDAFWLQR+LSKFY+DA ISAKLAEDVL IL   G D   CE++LV+LLD DKFDFIK L++NR KVLYCTRLKQAQ+D E++ +E EM+AD  L    G  IL++L   ASA+SW  DR G     ++ EA   R L  + GG+
Sbjct:  277 EDDGDSKYRLDVHAIDAFWLQRELSKFYKDAEISAKLAEDVLNILKEAGSDLSACENRLVLLLDYDKFDFIKLLLENRAKVLYCTRLKQAQNDEERRSIEEEMVADETLNDGEGRTILEQLRTTASADSWMQDRIGAMETTSRAEANKLRKLQQKSGGQ 435
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: XP_008897653.1 (hypothetical protein PPTG_05693 [Phytophthora parasitica INRA-310] >ETN16493.1 hypothetical protein PPTG_05693 [Phytophthora parasitica INRA-310])

HSP 1 Score: 160.2 bits (404), Expect = 5.400e-36
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 0 
Query:    4 EDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAIL--GGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELG---GPGILKELYQKASAESWAADRQGEFVRKTKGEA---RDLAGREGGR 155
            ED+G++  RL VH IDAFWLQR+LSKFY+DA ISAKLAEDVL IL   G D   CE++LV+LLD DKFDFIK L++NR KVLYCTRLKQAQ+D E++ +E EM+AD  L    G  IL++L   ASA+SW  DR G     ++ EA   R L  + GG+
Sbjct:  277 EDDGDSKYRLDVHAIDAFWLQRELSKFYKDAEISAKLAEDVLNILKEAGSDLSACENRLVLLLDYDKFDFIKLLLENRAKVLYCTRLKQAQNDEERRSIEEEMVADETLNDGEGRTILEQLRTTASADSWMQDRIGAMETTSRAEANKLRKLQQKSGGQ 435
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: ETO61661.1 (hypothetical protein F444_20358 [Phytophthora parasitica P1976])

HSP 1 Score: 160.2 bits (404), Expect = 5.400e-36
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 0 
Query:    4 EDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAIL--GGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELG---GPGILKELYQKASAESWAADRQGEFVRKTKGEA---RDLAGREGGR 155
            ED+G++  RL VH IDAFWLQR+LSKFY+DA ISAKLAEDVL IL   G D   CE++LV+LLD DKFDFIK L++NR KVLYCTRLKQAQ+D E++ +E EM+AD  L    G  IL++L   ASA+SW  DR G     ++ EA   R L  + GG+
Sbjct:  277 EDDGDSKYRLDVHAIDAFWLQRELSKFYKDAEISAKLAEDVLNILKEAGSDLSACENRLVLLLDYDKFDFIKLLLENRAKVLYCTRLKQAQNDEERRSIEEEMVADETLNDGEGRTILEQLRTTASADSWMQDRIGAMETTSRAEANKLRKLQQKSGGQ 435
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: ETP30916.1 (hypothetical protein F442_20171 [Phytophthora parasitica P10297])

HSP 1 Score: 160.2 bits (404), Expect = 5.400e-36
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 0 
Query:    4 EDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAIL--GGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELG---GPGILKELYQKASAESWAADRQGEFVRKTKGEA---RDLAGREGGR 155
            ED+G++  RL VH IDAFWLQR+LSKFY+DA ISAKLAEDVL IL   G D   CE++LV+LLD DKFDFIK L++NR KVLYCTRLKQAQ+D E++ +E EM+AD  L    G  IL++L   ASA+SW  DR G     ++ EA   R L  + GG+
Sbjct:  277 EDDGDSKYRLDVHAIDAFWLQRELSKFYKDAEISAKLAEDVLNILKEAGSDLSACENRLVLLLDYDKFDFIKLLLENRAKVLYCTRLKQAQNDEERRSIEEEMVADETLNDGEGRTILEQLRTTASADSWMQDRIGAMETTSRAEANKLRKLQQKSGGQ 435
[Close]
BLAST of NO15G02300 vs. NCBI_GenBank
Match: KUF76895.1 (U5 small nuclear ribonucleoprotein [Phytophthora nicotianae])

HSP 1 Score: 160.2 bits (404), Expect = 5.400e-36
Identity = 91/159 (57.23%), Postives = 113/159 (71.07%), Query Frame = 0 
Query:    4 EDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAIL--GGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELG---GPGILKELYQKASAESWAADRQGEFVRKTKGEA---RDLAGREGGR 155
            ED+G++  RL VH IDAFWLQR+LSKFY+DA ISAKLAEDVL IL   G D   CE++LV+LLD DKFDFIK L++NR KVLYCTRLKQAQ+D E++ +E EM+AD  L    G  IL++L   ASA+SW  DR G     ++ EA   R L  + GG+
Sbjct:  277 EDDGDSKYRLDVHAIDAFWLQRELSKFYKDAEISAKLAEDVLNILKEAGSDLSACENRLVLLLDYDKFDFIKLLLENRAKVLYCTRLKQAQNDEERRSIEEEMVADETLNDGEGRTILEQLRTTASADSWMQDRIGAMETTSRAEANKLRKLQQKSGGQ 435
The following BLAST results are available for this feature:
BLAST of NO15G02300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22383.12.600e-5489.60u5 small nuclear ribonucleoprotein helicase [Nanno... [more]
XP_009036945.14.900e-3755.63hypothetical protein AURANDRAFT_37524 [Aureococcus... [more]
ETK73250.12.400e-3657.86hypothetical protein L915_19792 [Phytophthora para... [more]
ETM33163.12.400e-3657.86hypothetical protein L914_19566 [Phytophthora para... [more]
ETI32909.15.400e-3657.23hypothetical protein F443_20356 [Phytophthora para... [more]
ETL79926.15.400e-3657.23hypothetical protein L917_19529 [Phytophthora para... [more]
XP_008897653.15.400e-3657.23hypothetical protein PPTG_05693 [Phytophthora para... [more]
ETO61661.15.400e-3657.23hypothetical protein F444_20358 [Phytophthora para... [more]
ETP30916.15.400e-3657.23hypothetical protein F442_20171 [Phytophthora para... [more]
KUF76895.15.400e-3657.23U5 small nuclear ribonucleoprotein [Phytophthora n... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02300.1NO15G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02300.1NO15G02300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02300 ID=NO15G02300|Name=NO15G02300|organism=Nannochloropsis oceanica|type=gene|length=501bp
ATGGAGGTGGAGGACGAAGGGGAGGCAGCGATGAGGCTGTCAGTGCATGA
CATTGATGCCTTTTGGCTGCAGCGACAGCTGTCAAAGTTTTACGAGGATG
CGAACATCAGCGCGAAGCTCGCTGAGGATGTGTTGGCCATCTTGGGGGGT
AGGGATGAACTGGATTGTGAGAGTAAGCTGGTGGTGCTCCTCGATGTGGA
CAAATTTGACTTCATCAAGAAGCTGATGAAGAACCGGGGAAAGGTGTTGT
ATTGTACCCGTCTGAAGCAAGCACAGAGCGACGCGGAGAAGAAGGAGGTG
GAGGGGGAGATGCTCGCTGATTTGGAGTTGGGAGGCCCGGGGATCTTGAA
GGAATTATATCAGAAGGCGAGCGCAGAGAGTTGGGCTGCGGATCGCCAGG
GGGAGTTTGTGCGGAAGACGAAAGGGGAGGCACGGGACTTGGCGGGGAGA
GAGGGAGGGAGGGGGGAGGGGTGGTGGAGGATGCACAGGGGTATGTCCTG
A
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protein sequence of NO15G02300.1

>NO15G02300.1-protein ID=NO15G02300.1-protein|Name=NO15G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MEVEDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAILGG
RDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEV
EGEMLADLELGGPGILKELYQKASAESWAADRQGEFVRKTKGEARDLAGR
EGGRGEGWWRMHRGMS*
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Synonyms
Publications