NO15G02300.1, NO15G02300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO15G02300.1
Unique NameNO15G02300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length501
Alignment locationchr15:642989..643489 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:642989..643489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO15G02300.1 vs.
Match: EWM22383.1 (u5 small nuclear ribonucleoprotein helicase [Nannochloropsis gaditana])

HSP 1 Score: 226.9 bits (577), Expect = 4.700e-56
Identity = 118/135 (87.41%), Postives = 124/135 (91.85%), Query Frame = 0 
Query:   24 QRQLSKFYEDANISAKLAEDVLAILGGRDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEVEGEMLADLELGGPGILKELYQKASAESWAADRQGEFVRKTKGEARDL-AGREGGRGEG 158
            +RQL K+YEDANISAKLAEDVLAILGG DELDCESKLVVLLDVDKFDFIKKLMKNRGK+L+CTRLKQAQS AEKKEVE EML D+ELGGP ILKELYQKA+AESWAADRQGEFVRKTKGEAR L  GRE GRG G
Sbjct:  272 ERQLGKYYEDANISAKLAEDVLAILGGADELDCESKLVVLLDVDKFDFIKKLMKNRGKILFCTRLKQAQSQAEKKEVEAEMLQDVELGGPAILKELYQKATAESWAADRQGEFVRKTKGEARGLGGGREEGRGAG 406
The following BLAST results are available for this feature:
BLAST of NO15G02300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22383.14.700e-5687.41u5 small nuclear ribonucleoprotein helicase [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO15G02300NO15G02300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO15G02300.1NO15G02300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO15G02300.1.cds1NO15G02300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO15G02300.1 ID=NO15G02300.1|Name=NO15G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=501bp
ATGGAGGTGGAGGACGAAGGGGAGGCAGCGATGAGGCTGTCAGTGCATGA
CATTGATGCCTTTTGGCTGCAGCGACAGCTGTCAAAGTTTTACGAGGATG
CGAACATCAGCGCGAAGCTCGCTGAGGATGTGTTGGCCATCTTGGGGGGT
AGGGATGAACTGGATTGTGAGAGTAAGCTGGTGGTGCTCCTCGATGTGGA
CAAATTTGACTTCATCAAGAAGCTGATGAAGAACCGGGGAAAGGTGTTGT
ATTGTACCCGTCTGAAGCAAGCACAGAGCGACGCGGAGAAGAAGGAGGTG
GAGGGGGAGATGCTCGCTGATTTGGAGTTGGGAGGCCCGGGGATCTTGAA
GGAATTATATCAGAAGGCGAGCGCAGAGAGTTGGGCTGCGGATCGCCAGG
GGGAGTTTGTGCGGAAGACGAAAGGGGAGGCACGGGACTTGGCGGGGAGA
GAGGGAGGGAGGGGGGAGGGGTGGTGGAGGATGCACAGGGGTATGTCCTG
A
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protein sequence of NO15G02300.1

>NO15G02300.1-protein ID=NO15G02300.1-protein|Name=NO15G02300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MEVEDEGEAAMRLSVHDIDAFWLQRQLSKFYEDANISAKLAEDVLAILGG
RDELDCESKLVVLLDVDKFDFIKKLMKNRGKVLYCTRLKQAQSDAEKKEV
EGEMLADLELGGPGILKELYQKASAESWAADRQGEFVRKTKGEARDLAGR
EGGRGEGWWRMHRGMS*
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mRNA from alignment at chr15:642989..643489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO15G02300.1 ID=NO15G02300.1|Name=NO15G02300.1|organism=Nannochloropsis oceanica|type=mRNA|length=501bp|location=Sequence derived from alignment at chr15:642989..643489- (Nannochloropsis oceanica)
ATGGAGGTGGAGGACGAAGGGGAGGCAGCGATGAGGCTGTCAGTGCATGA
CATTGATGCCTTTTGGCTGCAGCGACAGCTGTCAAAGTTTTACGAGGATG
CGAACATCAGCGCGAAGCTCGCTGAGGATGTGTTGGCCATCTTGGGGGGT
AGGGATGAACTGGATTGTGAGAGTAAGCTGGTGGTGCTCCTCGATGTGGA
CAAATTTGACTTCATCAAGAAGCTGATGAAGAACCGGGGAAAGGTGTTGT
ATTGTACCCGTCTGAAGCAAGCACAGAGCGACGCGGAGAAGAAGGAGGTG
GAGGGGGAGATGCTCGCTGATTTGGAGTTGGGAGGCCCGGGGATCTTGAA
GGAATTATATCAGAAGGCGAGCGCAGAGAGTTGGGCTGCGGATCGCCAGG
GGGAGTTTGTGCGGAAGACGAAAGGGGAGGCACGGGACTTGGCGGGGAGA
GAGGGAGGGAGGGGGGAGGGGTGGTGGAGGATGCACAGGGGTATGTCCTG
A
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Coding sequence (CDS) from alignment at chr15:642989..643489-

>NO15G02300.1 ID=NO15G02300.1|Name=NO15G02300.1|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at chr15:642989..643489- (Nannochloropsis oceanica)
ATGGAGGTGGAGGACGAAGGGGAGGCAGCGATGAGGCTGTCAGTGCATGA
CATTGATGCCTTTTGGCTGCAGCGACAGCTGTCAAAGTTTTACGAGGATG
CGAACATCAGCGCGAAGCTCGCTGAGGATGTGTTGGCCATCTTGGGGGGT
AGGGATGAACTGGATTGTGAGAGTAAGCTGGTGGTGCTCCTCGATGTGGA
CAAATTTGACTTCATCAAGAAGCTGATGAAGAACCGGGGAAAGGTGTTGT
ATTGTACCCGTCTGAAGCAAGCACAGAGCGACGCGGAGAAGAAGGAGGTG
GAGGGGGAGATGCTCGCTGATTTGGAGTTGGGAGGCCCGGGGATCTTGAA
GGAATTATATCAGAAGGCGAGCGCAGAGAGTTGGGCTGCGGATCGCCAGG
GGGAGTTTGTGCGGAAGACGAAAGGGGAGGCACGGGACTTGGCGGGGAGA
GAGGGAGGGAGGGGGGAGGGGTGGTGGAGGATGCACAGGGGTATGTCCTG
A
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Synonyms
Publications