NO15G02250, NO15G02250 (gene) Nannochloropsis oceanica

Overview
NameNO15G02250
Unique NameNO15G02250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length985
Alignment locationchr15:626916..627900 +

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Properties
Property NameValue
DescriptionMitochondrial 3-hydroxyisobutyryl
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:626916..627900 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007263DUF393
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Homology
BLAST of NO15G02250 vs. NCBI_GenBank
Match: EWM22359.1 (mitochondrial 3-hydroxyisobutyryl [Nannochloropsis gaditana])

HSP 1 Score: 294.3 bits (752), Expect = 3.100e-76
Identity = 147/200 (73.50%), Postives = 165/200 (82.50%), Query Frame = 0
Query:   15 QAFLGIRPSPVVCPPSSLSKRGATTLHDSDAFLPRSPPFRAPQSTQHAGEDLD-----TLQGRLFARDTRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMER 210
            Q F+  RP P+V P S  S RGATT HDSDA++P   PFRAPQSTQH G+D+D     TLQ RLF  D+RRVILFDG+CGFCSDVVN+FINFDGDPRGAFRFASLQGEIGQELL ANG+DT+HFNTIVLVDK++VFTSSDAVL+IA RLK+P PQLA+LAK ++PH   DALY FVSSNRHLLAGEKDSCRIP   E  R
Sbjct:  594 QGFITPRPLPLVAPFS--SHRGATTFHDSDAYMPSPSPFRAPQSTQHPGQDVDGTYTSTLQDRLFETDSRRVILFDGDCGFCSDVVNLFINFDGDPRGAFRFASLQGEIGQELLTANGLDTEHFNTIVLVDKDEVFTSSDAVLEIADRLKEPFPQLARLAKVLLPHVFRDALYSFVSSNRHLLAGEKDSCRIPRREEGRR 791          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: WP_013598717.1 (MULTISPECIES: thiol-disulfide oxidoreductase DCC family protein [Weeksella] >ADX68328.1 thiol-disulfide oxidoreductase DCC [Weeksella virosa DSM 16922] >OFM83115.1 thiol-disulfide oxidoreductase [Weeksella sp. HMSC059D05])

HSP 1 Score: 113.2 bits (282), Expect = 9.800e-22
Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = 0
Query:   78 TRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMERFLD 213
            + ++ILFDG C  C+  V   +  D +    FRFASLQ E GQ  L+ +G+DTK+F++IVL+D +  FT SDAVL+IA  L  P   L+    AI+P +  D  Y F++ NR+ L G+K+SC +P+     RFLD
Sbjct:    3 SEKIILFDGICNLCNQSVQFVLEHDKNKH--FRFASLQSEFGQMFLRKHGLDTKNFDSIVLLDGDTFFTKSDAVLRIAKELHHPARLLSYC--AILPKNSRDFFYSFIAKNRYRLFGKKESCWLPTPELKSRFLD 133          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: XP_002985503.1 (DCC family protein At1g52590, chloroplastic [Selaginella moellendorffii] >EFJ13377.1 hypothetical protein SELMODRAFT_122411 [Selaginella moellendorffii])

HSP 1 Score: 111.7 bits (278), Expect = 2.800e-21
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 0
Query:   73 LFARDTRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMERFL 212
            LFA DTR VILFDG C  C+  VN  +  D DPR   RFA+LQ   G+ LL+ +G      ++IVLV+K++ +  S+AVL+IA  L +P P LA LA  + P  + D  Y  +++NR+ L G+ + CR   E   ERFL
Sbjct:   17 LFASDTRPVILFDGVCNLCNGGVNFVL--DRDPRARLRFAALQSNAGRALLEKSGRSRDDISSIVLVEKQRSYIKSEAVLRIAHYLDEPYPSLATLA-LLFPLFLRDPTYDLIANNRYSLFGQTNHCRTSDEQFKERFL 152          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: OEU18889.1 (DUF393-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 111.7 bits (278), Expect = 2.800e-21
Identity = 63/155 (40.65%), Postives = 91/155 (58.71%), Query Frame = 0
Query:   65 DLDTLQGRLF-ARDTRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQ-----PLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEME-RFLD 213
            D  T+  ++F ++D R +ILFDG C  C+  VN+ +  D DP G  RFA+LQ  +G+ LL+ NG +    ++IVLV K   +T SDAVL+I   L       PL   A + + IIP  I D +Y  V+ NR+ L G+KD CR  ++ E E RF++
Sbjct:    6 DPKTVSSKVFSSQDKRPIILFDGVCNLCNTAVNLAL--DWDPSGKLRFAALQSNVGRSLLEVNGRNANDISSIVLVTKNGAYTKSDAVLKITEELTPFSSLLPLKPAAIIGRYIIPKFIRDLIYDGVADNRYDLMGKKDMCRFDADGEFEDRFIN 158          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: XP_002987062.2 (DCC family protein At1g52590, chloroplastic isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 111.7 bits (278), Expect = 2.800e-21
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 0
Query:   73 LFARDTRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMERFL 212
            LFA DTR VILFDG C  C+  VN  +  D DPR   RFA+LQ   G+ LL+ +G      ++IVLV+K++ +  S+AVL+IA  L +P P LA LA  + P  + D  Y  +++NR+ L G+ + CR   E   ERFL
Sbjct:   17 LFASDTRPVILFDGVCNLCNGGVNFVL--DRDPRARLRFAALQSNAGRALLERSGRSRDDISSIVLVEKQRSYIKSEAVLRIAHYLDEPYPSLATLA-LLFPLFLRDPTYDLIANNRYSLFGQTNHCRTSDEQFKERFL 152          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: PKL78374.1 (hypothetical protein CVV27_03400 [Candidatus Melainabacteria bacterium HGW-Melainabacteria-1])

HSP 1 Score: 111.3 bits (277), Expect = 3.700e-21
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   75 ARDTRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMERFL 212
            A     ++LFDG C  C+  VN  I  D DP G F+FASLQ E GQ+LLK   + T  FNT+VL++       SDA L+IA RLK PL  LA +   I+P  + D +Y  ++SNR+   G++D CR+P+ +   RFL
Sbjct:   13 AEQRHAILLFDGVCNVCNGAVNFII--DHDPDGYFKFASLQSEAGQDLLKRFKLPTADFNTMVLIEHNSYHIKSDAALRIARRLKGPL-SLAYIG-VIVPRFVRDKIYDLIASNRYQWFGKRDQCRLPTPAIRARFL 145          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: EJK44712.1 (hypothetical protein THAOC_36727, partial [Thalassiosira oceanica])

HSP 1 Score: 110.9 bits (276), Expect = 4.900e-21
Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 0
Query:   72 RLFARDTRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQ----PLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEM-ERFLD 213
            R+F  D R VILFDG C  C++ VN+ +  D DP+G  RF++LQ ++G+ LL+A+G      ++IVLV  +  +T SDA+L I+  L      P+  L++LA  ++P  + D +Y  V+ NR+ + G +D CR  ++ E  +RF+D
Sbjct:   98 RVFETDDRPVILFDGVCNLCNNAVNLAL--DWDPKGKLRFSALQSDVGRSLLQAHGRAADDISSIVLVRTDGAYTKSDAILGISEELNPLPFVPMKPLSRLASGLVPQFLRDLIYDGVADNRYSIMGIRDECRFDADGEFDDRFVD 241          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: GAQ89402.1 (hypothetical protein KFL_005180020 [Klebsormidium nitens])

HSP 1 Score: 110.5 bits (275), Expect = 6.300e-21
Identity = 65/192 (33.85%), Postives = 105/192 (54.69%), Query Frame = 0
Query:   26 VCPPSSLSKRGATTLHDSDAFLPRSPPFRAPQ--STQHAGEDLDTLQGR----LFARDTRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMERFL 212
            + P  SL++   T L +      R P  R+ +  S++ +  D +T + R    LFA D R ++LFDG C  C++ VN  +  D DP+G  R+A+LQ E G+ LL  +G+     +++V+V   + +T SDA+L IA  L+ P+ +        +P    DA+Y  +++NRH   G +D+CR   E  MERF+
Sbjct:   50 LAPRVSLAQNQVTQLPE-PVTPTRGPAHRSTRDSSSKGSASDQETAEARPGDELFATDKRPIVLFDGICNMCNEGVNFML--DNDPKGKLRYAALQSEAGRTLLIRSGLRPDDHSSMVMVYSNRAYTHSDAILHIAQCLQSPVYKGLGSFGLCVPEFARDAVYSVIAANRHKFMGVRDTCRFLDEEAMERFV 238          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: WP_032132430.1 (thiol-disulfide oxidoreductase DCC family protein [Weeksella massiliensis])

HSP 1 Score: 109.4 bits (272), Expect = 1.400e-20
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 0
Query:   78 TRRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMERFLD 213
            T ++ILFDG C  C+  V   +  D + +  FRFASLQ E GQ  LK NG+DTK+F++I+L+D  + ++ SDA L+IA  L  P   L+     I+P  I D  Y  ++ NR+   G+K+SC +P+     RFLD
Sbjct:    3 TEKIILFDGICNLCNQSVQFVLEHDKEKQ--FRFASLQSEFGQSFLKKNGLDTKNFDSIILLDGYKYYSKSDAALRIAKELDHPTKLLSHW--IILPKFIRDFFYSLIAKNRYRFFGKKESCWLPTPELKSRFLD 133          
BLAST of NO15G02250 vs. NCBI_GenBank
Match: PSP94495.1 (thiol-disulfide oxidoreductase DCC family protein [Halobacteriales archaeon QS_4_62_28])

HSP 1 Score: 109.4 bits (272), Expect = 1.400e-20
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 0
Query:   79 RRVILFDGECGFCSDVVNIFINFDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDAVLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCRIPSESEMERFLDQ 214
            R V+LFDG C  C+ +V   I FD    G F FA LQ ++GQ LL  +G+ T  F++ VLVD  + +T S A L+ A RL  P P LA L    +P  + DA+Y FV+ +R+ + G+KD C +P+    ERF D+
Sbjct:   25 RPVLLFDGVCNLCNGIVRFVIRFDAS--GEFLFAPLQSDVGQALLDRHGLPTDDFDSFVLVDGGEYYTKSTAALKSARRLDGPWPLLAPLLS--LPEGVRDAVYDFVADHRYQVFGKKDECPVPAPETRERFADR 155          
The following BLAST results are available for this feature:
BLAST of NO15G02250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22359.13.100e-7673.50mitochondrial 3-hydroxyisobutyryl [Nannochloropsis... [more]
WP_013598717.19.800e-2243.70MULTISPECIES: thiol-disulfide oxidoreductase DCC f... [more]
XP_002985503.12.800e-2143.88DCC family protein At1g52590, chloroplastic [Selag... [more]
OEU18889.12.800e-2140.65DUF393-domain-containing protein [Fragilariopsis c... [more]
XP_002987062.22.800e-2143.88DCC family protein At1g52590, chloroplastic isofor... [more]
PKL78374.13.700e-2143.80hypothetical protein CVV27_03400 [Candidatus Melai... [more]
EJK44712.14.900e-2138.36hypothetical protein THAOC_36727, partial [Thalass... [more]
GAQ89402.16.300e-2133.85hypothetical protein KFL_005180020 [Klebsormidium ... [more]
WP_032132430.11.400e-2041.48thiol-disulfide oxidoreductase DCC family protein ... [more]
PSP94495.11.400e-2042.22thiol-disulfide oxidoreductase DCC family protein ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL147nonsL147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001371NSK001371Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G02250.1NO15G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587882gene_4780Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G02250.1NO15G02250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G02250 ID=NO15G02250|Name=NO15G02250|organism=Nannochloropsis oceanica|type=gene|length=985bp
ATGAAGTTCCTAATGGCAGCCTTGCTTGGCGTGACCAGTACACAGGCGTT
CTTGGGTATCCGTCCCTCTCCCGTCGTTTGTCCTCCCTCATCCCTGTCGA
AACGTGGTGCCACTACCCTGCACGACTCGGACGCCTTTCTCCCCCGTTCT
CCCCCCTTCCGCGCACCACAAAGCACGCAACATGCCGGTGAAGACTTGGA
CACGTTGCAAGGCCGGTTATTTGCCAGAGACACCCGACGCGTGATTTTGT
TTGACGGCGgtatgtgaacctgtttcgttggtttgggtggtgtgagccca
agtgcttttgtacttgtgtgtatgtccatgaactttgccttctttccttc
cccctcatttcccttccctctttttttgtgctctaccgtcataaacagAA
TGCGGTTTCTGCTCGGATGTTGTTAATATTTTCATCAATTTTGATGGGGA
TCCTCGCGGGGCTTTTCGCTTCGCGTCCCTGCAAGGCGAGATAGGACAAG
AATTGTTGAAGGCCAACGGGATGGACACAAAGCATTTTAATACGATTGTA
TTGGTGGATAAGGAGCAGgtacaacttttgagctcgctgagtgctccatg
gaatgtgtgtgggtgaattttgtgaagagctacgtgcatacatgcatggg
caccaaaaaggcaagaaaaagcctcatgagtgctttgattactccgtaaa
atgtttggaatcacagtgcttcaatcctcactcacatcccctcccctctt
tttccccctcccacacacctagGTCTTTACCTCCTCCGACGCCGTTCTTC
AAATCGCCTCGCGGCTTAAGCAGCCCCTCCCTCAACTAGCCAAGCTGGCC
AAGGCCATCATTCCCCACGACATTCTAGACGCCCTCTACCACTTTGTTTC
ATCGAATCGGCATTTGTTGGCAGGCGAGAAAGATTCCTGTCGCATCCCAA
GCGAGAGTGAAATGGAGCGGTTCTTGGACCAATAG
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protein sequence of NO15G02250.1

>NO15G02250.1-protein ID=NO15G02250.1-protein|Name=NO15G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MKFLMAALLGVTSTQAFLGIRPSPVVCPPSSLSKRGATTLHDSDAFLPRS
PPFRAPQSTQHAGEDLDTLQGRLFARDTRRVILFDGECGFCSDVVNIFIN
FDGDPRGAFRFASLQGEIGQELLKANGMDTKHFNTIVLVDKEQVFTSSDA
VLQIASRLKQPLPQLAKLAKAIIPHDILDALYHFVSSNRHLLAGEKDSCR
IPSESEMERFLDQ*
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Synonyms
Publications